ENSG00000030582

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000053867 ENSG00000030582 No_inf pgKDN_inf GRN protein_coding protein_coding 526.3463 829.5129 344.2014 6.208403 8.309548 -1.268987 426.99881 668.12104 270.193725 10.123653 3.249552 -1.3060835 0.81269167 0.80560 0.786825 -0.018775 0.84636678 0.03921154 FALSE  
ENST00000586242 ENSG00000030582 No_inf pgKDN_inf GRN protein_coding protein_coding 526.3463 829.5129 344.2014 6.208403 8.309548 -1.268987 24.29256 67.74878 5.128911 12.402249 5.128911 -3.7208734 0.03178333 0.08145 0.013900 -0.067550 0.03921154 0.03921154 FALSE  
ENST00000588170 ENSG00000030582 No_inf pgKDN_inf GRN protein_coding retained_intron 526.3463 829.5129 344.2014 6.208403 8.309548 -1.268987 42.56601 48.42978 36.929200 3.207493 5.267972 -0.3910398 0.08980000 0.05845 0.106525 0.048075 0.06511763 0.03921154 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000030582 E001 1.4873379 2.967959e-02 6.251167e-01 0.838620134 17 44345246 44345261 16 + 0.419 0.339 -0.457
ENSG00000030582 E002 1.8598104 3.149043e-02 5.865960e-01 0.816766949 17 44345262 44345264 3 + 0.481 0.394 -0.457
ENSG00000030582 E003 5.8249545 6.035289e-02 3.391868e-01 0.630882562 17 44345265 44345281 17 + 0.874 0.747 -0.503
ENSG00000030582 E004 20.8697875 7.356018e-04 1.016356e-03 0.015188728 17 44345282 44345297 16 + 1.437 1.214 -0.779
ENSG00000030582 E005 21.2343301 7.226750e-04 5.618231e-04 0.009564116 17 44345298 44345301 4 + 1.450 1.218 -0.809
ENSG00000030582 E006 23.4642784 5.631803e-04 5.025931e-04 0.008783816 17 44345302 44345304 3 + 1.486 1.262 -0.776
ENSG00000030582 E007 25.6970031 5.451277e-04 4.552250e-04 0.008121768 17 44345305 44345305 1 + 1.519 1.302 -0.749
ENSG00000030582 E008 39.4483518 8.165980e-03 6.857394e-02 0.264355225 17 44345306 44345313 8 + 1.631 1.515 -0.395
ENSG00000030582 E009 99.4945086 1.508234e-04 1.978949e-01 0.479303399 17 44345314 44345334 21 + 1.974 1.930 -0.148
ENSG00000030582 E010 3.2010357 4.453301e-03 9.024633e-02 0.312008383 17 44345335 44345530 196 + 0.737 0.507 -1.009
ENSG00000030582 E011 2.0774528 1.474446e-02 2.616778e-02 0.149664167 17 44345531 44345565 35 + 0.667 0.339 -1.627
ENSG00000030582 E012 2.2056237 6.227137e-03 3.819167e-02 0.188663632 17 44345566 44345605 40 + 0.667 0.367 -1.457
ENSG00000030582 E013 2.1143027 7.726505e-03 8.055820e-01 0.928044520 17 44345610 44345741 132 + 0.481 0.443 -0.194
ENSG00000030582 E014 0.7341811 5.264573e-02 2.416522e-01 0.531354130 17 44346089 44346228 140 + 0.346 0.159 -1.457
ENSG00000030582 E015 98.6044471 1.497181e-04 1.288902e-01 0.380844966 17 44349158 44349161 4 + 1.976 1.924 -0.174
ENSG00000030582 E016 100.5980986 1.482325e-04 1.382390e-01 0.395595235 17 44349162 44349164 3 + 1.984 1.933 -0.169
ENSG00000030582 E017 303.4888199 6.972201e-05 7.714035e-05 0.001912868 17 44349165 44349302 138 + 2.479 2.402 -0.254
ENSG00000030582 E018 0.6173655 2.283686e-02 5.227634e-01 0.776200869 17 44349303 44349425 123 + 0.258 0.159 -0.872
ENSG00000030582 E019 380.2801322 6.231020e-05 7.926563e-03 0.068698576 17 44349426 44349551 126 + 2.555 2.508 -0.154
ENSG00000030582 E020 0.6268712 1.507916e-02 7.719075e-01 0.912185763 17 44349552 44349624 73 + 0.148 0.202 0.543
ENSG00000030582 E021 0.6270921 1.492184e-02 7.722005e-01 0.912292682 17 44349625 44349666 42 + 0.148 0.202 0.543
ENSG00000030582 E022 347.5602578 6.851860e-05 3.801958e-02 0.188076024 17 44349667 44349751 85 + 2.510 2.472 -0.127
ENSG00000030582 E023 1.4581021 9.160864e-03 2.308557e-02 0.138616843 17 44349752 44349894 143 + 0.584 0.240 -1.942
ENSG00000030582 E024 337.0614227 6.669884e-05 4.733418e-01 0.740349869 17 44350228 44350288 61 + 2.458 2.472 0.045
ENSG00000030582 E025 319.7492506 6.661384e-05 9.083442e-01 0.970877503 17 44350289 44350340 52 + 2.444 2.446 0.007
ENSG00000030582 E026 214.1294214 8.962992e-05 4.935193e-01 0.755398224 17 44350442 44350461 20 + 2.284 2.268 -0.054
ENSG00000030582 E027 341.2164286 7.933303e-05 6.910885e-01 0.873235147 17 44350462 44350538 77 + 2.479 2.472 -0.025
ENSG00000030582 E028 235.7475401 8.444374e-04 3.077072e-01 0.600896810 17 44350539 44350577 39 + 2.333 2.307 -0.086
ENSG00000030582 E029 321.8821823 1.542465e-03 9.764136e-01 0.996007242 17 44350691 44350771 81 + 2.449 2.448 -0.003
ENSG00000030582 E030 250.4668859 7.692556e-05 1.787524e-01 0.453708129 17 44350772 44350800 29 + 2.318 2.347 0.099
ENSG00000030582 E031 0.6356513 1.503337e-02 2.039968e-01 0.486657893 17 44350911 44351036 126 + 0.001 0.240 9.081
ENSG00000030582 E032 340.6894861 5.857237e-05 8.132659e-01 0.931579528 17 44351037 44351100 64 + 2.470 2.474 0.014
ENSG00000030582 E033 305.2772096 6.587030e-04 6.173039e-01 0.834268263 17 44351101 44351163 63 + 2.434 2.423 -0.037
ENSG00000030582 E034 6.2645489 2.958241e-03 1.523825e-01 0.416324422 17 44351164 44351362 199 + 0.667 0.849 0.731
ENSG00000030582 E035 404.8587176 7.065673e-04 7.897834e-01 0.919402005 17 44351363 44351460 98 + 2.552 2.546 -0.018
ENSG00000030582 E036 737.7949045 1.236487e-04 3.529679e-01 0.642858605 17 44351550 44351752 203 + 2.799 2.811 0.040
ENSG00000030582 E037 331.0774898 2.225639e-04 9.034591e-01 0.969019649 17 44351753 44351795 43 + 2.459 2.461 0.008
ENSG00000030582 E038 689.3721783 9.132880e-04 9.298289e-01 0.979428914 17 44352015 44352201 187 + 2.777 2.779 0.005
ENSG00000030582 E039 312.6270697 6.979373e-05 9.153821e-01 0.973520979 17 44352202 44352248 47 + 2.434 2.436 0.006
ENSG00000030582 E040 822.6537779 3.778064e-05 4.831298e-05 0.001295086 17 44352341 44352528 188 + 2.818 2.867 0.162
ENSG00000030582 E041 437.3477612 5.288490e-05 2.694855e-03 0.031838847 17 44352529 44352571 43 + 2.543 2.593 0.167
ENSG00000030582 E042 1.8883555 7.870785e-03 2.134086e-01 0.498659840 17 44352572 44352660 89 + 0.258 0.465 1.244
ENSG00000030582 E043 396.8019292 5.066639e-05 3.193275e-02 0.168882209 17 44352661 44352715 55 + 2.511 2.548 0.124
ENSG00000030582 E044 1067.2969142 6.464626e-05 5.465427e-02 0.232855932 17 44352716 44353106 391 + 2.953 2.973 0.067

Help

Please Click HERE to learn more details about the results from DEXseq.