ENSG00000049618

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000350026 ENSG00000049618 No_inf pgKDN_inf ARID1B protein_coding protein_coding 35.01294 38.54104 30.45496 1.040354 1.131054 -0.3396186 0.9963405 0.4292499 2.2520978 0.4292499 0.2180818 2.3645476 0.03185833 0.011650 0.074800 0.063150 8.367954e-02 9.182578e-07 FALSE TRUE
ENST00000414678 ENSG00000049618 No_inf pgKDN_inf ARID1B protein_coding protein_coding 35.01294 38.54104 30.45496 1.040354 1.131054 -0.3396186 3.5833271 4.3376769 3.1457587 0.7866904 1.0589613 -0.4622578 0.10565000 0.111325 0.106850 -0.004475 9.306749e-01 9.182578e-07 FALSE TRUE
ENST00000635928 ENSG00000049618 No_inf pgKDN_inf ARID1B protein_coding protein_coding 35.01294 38.54104 30.45496 1.040354 1.131054 -0.3396186 2.4911156 4.2003001 0.0000000 0.3786239 0.0000000 -8.7177793 0.06519167 0.109475 0.000000 -0.109475 9.182578e-07 9.182578e-07 FALSE TRUE
ENST00000636254 ENSG00000049618 No_inf pgKDN_inf ARID1B protein_coding retained_intron 35.01294 38.54104 30.45496 1.040354 1.131054 -0.3396186 13.0964052 14.2302828 13.0308269 1.0895207 1.0622756 -0.1269424 0.37713333 0.367900 0.426025 0.058125 8.105938e-01 9.182578e-07 FALSE TRUE
ENST00000637741 ENSG00000049618 No_inf pgKDN_inf ARID1B protein_coding protein_coding_CDS_not_defined 35.01294 38.54104 30.45496 1.040354 1.131054 -0.3396186 2.2505555 2.1498453 0.6198441 0.8150480 0.6198441 -1.7778612 0.06241667 0.055525 0.021975 -0.033550 5.213025e-01 9.182578e-07 FALSE TRUE
ENST00000674190 ENSG00000049618 No_inf pgKDN_inf ARID1B protein_coding protein_coding_CDS_not_defined 35.01294 38.54104 30.45496 1.040354 1.131054 -0.3396186 1.9328669 0.5777578 1.6107608 0.5777578 0.6350275 1.4633776 0.05462500 0.014275 0.050950 0.036675 4.433701e-01 9.182578e-07 FALSE TRUE
MSTRG.25570.17 ENSG00000049618 No_inf pgKDN_inf ARID1B protein_coding   35.01294 38.54104 30.45496 1.040354 1.131054 -0.3396186 2.0347421 2.5717410 2.8395719 0.4710591 1.3711356 0.1424009 0.05834167 0.067550 0.090300 0.022750 1.000000e+00 9.182578e-07 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000049618 E001 0.5073513 0.0158984509 7.627223e-02 0.2822993811 6 156776020 156776126 107 + 0.000 0.272 10.987
ENSG00000049618 E002 0.0000000       6 156776862 156777377 516 +      
ENSG00000049618 E003 0.6357773 0.0319398249 4.046688e-02 0.1951093781 6 156777378 156777680 303 + 0.000 0.320 13.700
ENSG00000049618 E004 1.4802267 0.1164111829 8.827129e-01 0.9605566116 6 156777681 156777929 249 + 0.376 0.402 0.150
ENSG00000049618 E005 0.4999558 0.0153033229 4.450139e-01 0.7195305737 6 156777930 156777940 11 + 0.105 0.218 1.249
ENSG00000049618 E006 0.6175864 0.0143257676 8.524155e-01 0.9478430601 6 156777941 156777957 17 + 0.190 0.218 0.249
ENSG00000049618 E007 6.5040353 0.0048866891 6.659652e-01 0.8610579129 6 156777958 156778973 1016 + 0.896 0.851 -0.172
ENSG00000049618 E008 12.9742132 0.0013509932 2.916531e-05 0.0008466102 6 156778974 156779399 426 + 1.300 0.968 -1.196
ENSG00000049618 E009 2.3033058 0.0059166095 1.003568e-01 0.3308572273 6 156779400 156779417 18 + 0.633 0.402 -1.113
ENSG00000049618 E010 3.0255241 0.0048023052 4.904893e-02 0.2183758347 6 156779418 156779432 15 + 0.732 0.471 -1.166
ENSG00000049618 E011 3.8569451 0.0278631478 1.159449e-02 0.0886249013 6 156779433 156779463 31 + 0.848 0.502 -1.472
ENSG00000049618 E012 2.5253500 0.0496372981 2.486220e-02 0.1449544795 6 156779464 156779471 8 + 0.709 0.363 -1.657
ENSG00000049618 E013 7.5098122 0.0020978642 1.449671e-03 0.0199100027 6 156829227 156829372 146 + 1.079 0.763 -1.198
ENSG00000049618 E014 4.8015068 0.0054665696 9.466892e-01 0.9857849928 6 156829373 156829409 37 + 0.754 0.763 0.036
ENSG00000049618 E015 3.9644164 0.0036093937 2.663289e-01 0.5597671434 6 156829410 156829421 12 + 0.605 0.746 0.597
ENSG00000049618 E016 0.0000000       6 156829422 156829730 309 +      
ENSG00000049618 E017 0.0000000       6 156870099 156870119 21 +      
ENSG00000049618 E018 0.0000000       6 156870120 156870527 408 +      
ENSG00000049618 E019 0.1265070 0.0122844085 6.788498e-01   6 156871614 156871652 39 + 0.000 0.086 11.611
ENSG00000049618 E020 10.8416098 0.0012575024 6.937697e-01 0.8748949669 6 156901376 156901525 150 + 1.048 1.083 0.127
ENSG00000049618 E021 2.7492307 0.0086528130 3.985638e-02 0.1935326306 6 156901526 156902150 625 + 0.376 0.673 1.430
ENSG00000049618 E022 4.0244339 0.0752574550 3.099614e-01 0.6032570304 6 156935466 156935470 5 + 0.774 0.630 -0.599
ENSG00000049618 E023 8.1519873 0.0020634108 2.267473e-02 0.1371007764 6 156935471 156935544 74 + 1.069 0.851 -0.814
ENSG00000049618 E024 6.2017687 0.0025121012 3.795131e-02 0.1879583024 6 156935545 156935576 32 + 0.966 0.746 -0.850
ENSG00000049618 E025 6.7234110 0.0023166190 1.425028e-02 0.1014753880 6 156935577 156936501 925 + 0.710 0.978 1.043
ENSG00000049618 E026 22.0915460 0.0116380796 4.226028e-06 0.0001625725 6 156936502 156943901 7400 + 1.108 1.480 1.304
ENSG00000049618 E027 1.6213977 0.0084293498 1.175071e-01 0.3621226709 6 156984708 156985644 937 + 0.261 0.502 1.401
ENSG00000049618 E028 0.3724725 0.0166310597 7.394821e-01   6 157022286 157022497 212 + 0.105 0.157 0.664
ENSG00000049618 E029 0.1272623 0.0123522725 6.788598e-01   6 157022498 157022578 81 + 0.000 0.086 11.611
ENSG00000049618 E030 1.3686358 0.0215166830 2.605000e-01 0.5530746549 6 157022579 157024752 2174 + 0.261 0.438 1.079
ENSG00000049618 E031 0.0000000       6 157030306 157030374 69 +      
ENSG00000049618 E032 0.1272623 0.0123522725 6.788598e-01   6 157036315 157036521 207 + 0.000 0.086 11.611
ENSG00000049618 E033 2.3029015 0.0229067649 1.128362e-01 0.3533888150 6 157036835 157036876 42 + 0.633 0.402 -1.113
ENSG00000049618 E034 2.1052076 0.0065299058 4.637058e-01 0.7335242409 6 157050914 157051912 999 + 0.423 0.531 0.539
ENSG00000049618 E035 0.9789829 0.0122950255 7.432992e-01 0.8984668487 6 157071182 157072575 1394 + 0.322 0.272 -0.335
ENSG00000049618 E036 8.1461416 0.0303908607 6.355792e-02 0.2536766565 6 157084662 157084765 104 + 1.069 0.851 -0.813
ENSG00000049618 E037 4.0062097 0.0047477745 6.210496e-02 0.2503227777 6 157084766 157084771 6 + 0.813 0.584 -0.957
ENSG00000049618 E038 9.6890419 0.0014534760 2.037352e-04 0.0042524208 6 157084772 157084905 134 + 1.185 0.851 -1.229
ENSG00000049618 E039 5.4627340 0.0025379635 1.613902e-02 0.1103221380 6 157110472 157110561 90 + 0.939 0.672 -1.055
ENSG00000049618 E040 0.3711203 0.0166423545 7.393605e-01   6 157110562 157111305 744 + 0.105 0.157 0.665
ENSG00000049618 E041 9.1177414 0.0114880594 5.731344e-01 0.8087550996 6 157133028 157133207 180 + 0.966 1.025 0.217
ENSG00000049618 E042 0.6270271 0.0153287468 2.670841e-01 0.5603522757 6 157140613 157141277 665 + 0.105 0.272 1.665
ENSG00000049618 E043 5.4068826 0.0860316879 8.965892e-01 0.9659630911 6 157148624 157148693 70 + 0.794 0.809 0.062
ENSG00000049618 E044 4.4136206 0.0375148799 7.444463e-01 0.8987985686 6 157148694 157148728 35 + 0.754 0.711 -0.174
ENSG00000049618 E045 6.8735131 0.0161632171 7.453659e-01 0.8992506717 6 157148729 157148819 91 + 0.911 0.877 -0.129
ENSG00000049618 E046 8.2237649 0.0016837860 7.298399e-01 0.8924476241 6 157148820 157148907 88 + 0.979 0.947 -0.120
ENSG00000049618 E047 4.8983674 0.0123395225 4.834831e-01 0.7479863104 6 157148908 157148910 3 + 0.813 0.729 -0.335
ENSG00000049618 E048 7.4397099 0.0076142693 8.533147e-02 0.3021644945 6 157148911 157148951 41 + 1.015 0.838 -0.668
ENSG00000049618 E049 0.3716209 0.0166715049 7.389157e-01   6 157148952 157148981 30 + 0.105 0.157 0.665
ENSG00000049618 E050 1.9601889 0.0139000209 6.469308e-01 0.8506214385 6 157148982 157150724 1743 + 0.505 0.438 -0.335
ENSG00000049618 E051 0.6074541 0.0143344590 4.805273e-01 0.7458838396 6 157150725 157150853 129 + 0.261 0.157 -0.920
ENSG00000049618 E052 0.6068275 0.0205821166 4.823642e-01 0.7472656620 6 157150854 157152404 1551 + 0.261 0.157 -0.920
ENSG00000049618 E053 0.0000000       6 157154055 157154309 255 +      
ENSG00000049618 E054 0.0000000       6 157164639 157164748 110 +      
ENSG00000049618 E055 0.9899975 0.0583716744 7.204631e-01 0.8874416213 6 157166015 157167039 1025 + 0.261 0.320 0.401
ENSG00000049618 E056 12.3367020 0.0502693444 1.952425e-01 0.4755084201 6 157167040 157167185 146 + 1.208 1.042 -0.594
ENSG00000049618 E057 5.0812351 0.0036213099 1.994730e-01 0.4811222420 6 157167186 157170049 2864 + 0.686 0.838 0.612
ENSG00000049618 E058 0.0000000       6 157170050 157170109 60 +      
ENSG00000049618 E059 0.1268540 0.0123288216 6.788173e-01   6 157170110 157170249 140 + 0.000 0.086 11.611
ENSG00000049618 E060 3.6232884 0.0430329753 4.910472e-02 0.2185160163 6 157172776 157173500 725 + 0.466 0.763 1.317
ENSG00000049618 E061 2.4325169 0.0056573872 1.601371e-01 0.4277777566 6 157173501 157173984 484 + 0.633 0.438 -0.920
ENSG00000049618 E062 0.2541163 0.0160184684 3.337780e-01   6 157173985 157174007 23 + 0.000 0.157 12.547
ENSG00000049618 E063 9.1564857 0.0129815989 9.863670e-02 0.3276791819 6 157174008 157174117 110 + 1.089 0.925 -0.606
ENSG00000049618 E064 0.3711203 0.0166423545 7.393605e-01   6 157174118 157174331 214 + 0.105 0.157 0.665
ENSG00000049618 E065 7.9068523 0.0018335765 1.125483e-02 0.0869403949 6 157174847 157175005 159 + 1.069 0.824 -0.920
ENSG00000049618 E066 1.8701677 0.0117011484 1.695604e-01 0.4415561678 6 157175006 157175840 835 + 0.322 0.531 1.124
ENSG00000049618 E067 18.6395424 0.0045170012 2.974842e-01 0.5905882338 6 157180969 157181178 210 + 1.329 1.255 -0.260
ENSG00000049618 E068 23.1112677 0.0172941801 9.416227e-01 0.9835582999 6 157184231 157184435 205 + 1.382 1.374 -0.027
ENSG00000049618 E069 2.2502500 0.0061050396 5.457900e-02 0.2327558773 6 157184436 157186354 1919 + 0.322 0.608 1.472
ENSG00000049618 E070 0.1265070 0.0122844085 6.788498e-01   6 157186355 157186620 266 + 0.000 0.086 11.611
ENSG00000049618 E071 21.3496324 0.0014048678 3.362571e-01 0.6282064759 6 157189642 157189780 139 + 1.306 1.370 0.222
ENSG00000049618 E072 8.3742181 0.0020952009 8.068852e-01 0.9287919620 6 157190038 157190040 3 + 0.953 0.978 0.092
ENSG00000049618 E073 22.6521240 0.0010535626 7.442911e-01 0.8987545704 6 157190041 157190210 170 + 1.356 1.378 0.075
ENSG00000049618 E074 8.6474450 0.0357724804 1.539900e-04 0.0033692886 6 157193471 157196164 2694 + 0.633 1.128 1.912
ENSG00000049618 E075 16.0942603 0.0211311201 8.227994e-01 0.9356232070 6 157196165 157196315 151 + 1.236 1.222 -0.048
ENSG00000049618 E076 0.0000000       6 157198509 157198810 302 +      
ENSG00000049618 E077 8.6902082 0.0065167223 2.885005e-01 0.5820430584 6 157198811 157198907 97 + 1.037 0.936 -0.376
ENSG00000049618 E078 79.8726143 0.0035529995 5.949205e-01 0.8218442920 6 157200705 157201488 784 + 1.914 1.894 -0.068
ENSG00000049618 E079 0.1272623 0.0123522725 6.788598e-01   6 157203658 157203865 208 + 0.000 0.086 11.611
ENSG00000049618 E080 26.6327806 0.0005306616 3.831820e-01 0.6692964422 6 157203866 157203996 131 + 1.406 1.457 0.177
ENSG00000049618 E081 1.6051909 0.0082566654 6.817536e-01 0.8682780953 6 157203997 157206166 2170 + 0.376 0.438 0.343
ENSG00000049618 E082 86.7575614 0.0054612609 7.356315e-01 0.8951582712 6 157206167 157206616 450 + 1.947 1.932 -0.048
ENSG00000049618 E083 149.1200961 0.0001892357 6.667673e-01 0.8613721774 6 157206617 157207491 875 + 2.165 2.176 0.038
ENSG00000049618 E084 133.0461385 0.0001744079 7.316557e-01 0.8933739645 6 157207492 157208181 690 + 2.126 2.119 -0.025
ENSG00000049618 E085 55.4709962 0.0018655753 1.936564e-01 0.4734875487 6 157208182 157208406 225 + 1.713 1.771 0.196
ENSG00000049618 E086 28.4959770 0.0039657228 2.239564e-01 0.5115777576 6 157208407 157208474 68 + 1.420 1.495 0.260
ENSG00000049618 E087 80.0157234 0.0028731388 6.601518e-01 0.8581238628 6 157208475 157208831 357 + 1.913 1.896 -0.055
ENSG00000049618 E088 105.3726486 0.0005260796 3.397251e-04 0.0064358038 6 157208832 157210779 1948 + 1.956 2.065 0.365

Help

Please Click HERE to learn more details about the results from DEXseq.