ENSG00000051009

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000265978 ENSG00000051009 No_inf pgKDN_inf FHIP1B protein_coding protein_coding 45.11851 72.00977 27.98451 3.211353 2.014546 -1.363249 2.951674 1.070768 3.5100159 1.0707678 1.4013945 1.7035253 0.08635833 0.013775 0.124325 0.110550 0.185761495 0.006586996 FALSE TRUE
ENST00000449352 ENSG00000051009 No_inf pgKDN_inf FHIP1B protein_coding protein_coding 45.11851 72.00977 27.98451 3.211353 2.014546 -1.363249 6.208279 4.758855 8.8205521 1.5938527 1.6535540 0.8888607 0.18202500 0.068475 0.321675 0.253200 0.171119417 0.006586996 FALSE TRUE
ENST00000529360 ENSG00000051009 No_inf pgKDN_inf FHIP1B protein_coding protein_coding_CDS_not_defined 45.11851 72.00977 27.98451 3.211353 2.014546 -1.363249 16.889560 34.845512 7.2790648 1.2793052 0.8440665 -2.2575812 0.33066667 0.485650 0.260975 -0.224675 0.006586996 0.006586996 FALSE TRUE
ENST00000532797 ENSG00000051009 No_inf pgKDN_inf FHIP1B protein_coding protein_coding_CDS_not_defined 45.11851 72.00977 27.98451 3.211353 2.014546 -1.363249 5.579325 5.961365 2.1553545 3.4824108 2.1553545 -1.4634574 0.12021667 0.076925 0.064350 -0.012575 0.897562669 0.006586996 FALSE FALSE
MSTRG.4310.1 ENSG00000051009 No_inf pgKDN_inf FHIP1B protein_coding   45.11851 72.00977 27.98451 3.211353 2.014546 -1.363249 3.384567 6.763186 0.9680708 0.7778179 0.9680708 -2.7918237 0.07225000 0.093025 0.038500 -0.054525 0.185002606 0.006586996 TRUE TRUE
MSTRG.4310.2 ENSG00000051009 No_inf pgKDN_inf FHIP1B protein_coding   45.11851 72.00977 27.98451 3.211353 2.014546 -1.363249 2.398290 4.133416 3.0614535 2.3965517 1.7850512 -0.4318990 0.05651667 0.053300 0.116250 0.062950 0.933887224 0.006586996 TRUE TRUE
MSTRG.4310.4 ENSG00000051009 No_inf pgKDN_inf FHIP1B protein_coding   45.11851 72.00977 27.98451 3.211353 2.014546 -1.363249 6.016808 13.072005 0.6063390 2.7209725 0.6063390 -4.4077158 0.10953333 0.187400 0.024100 -0.163300 0.028457878 0.006586996 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000051009 E001 0.126507 1.229633e-02 1.000000e+00   11 6211339 6211344 6 - 0.001 0.058 6.535
ENSG00000051009 E002 145.028384 1.324826e-04 9.797288e-03 7.925708e-02 11 6211345 6211867 523 - 2.149 2.079 -0.237
ENSG00000051009 E003 73.334581 2.148672e-04 2.984471e-01 5.914549e-01 11 6214411 6214573 163 - 1.836 1.793 -0.143
ENSG00000051009 E004 8.262104 1.629370e-03 2.690466e-01 5.626367e-01 11 6214710 6214732 23 - 0.810 0.933 0.474
ENSG00000051009 E005 74.916616 7.614060e-04 2.143152e-01 4.996056e-01 11 6214733 6214911 179 - 1.851 1.800 -0.172
ENSG00000051009 E006 305.512030 8.684236e-05 4.520984e-44 5.300755e-41 11 6214912 6216569 1658 - 2.195 2.471 0.921
ENSG00000051009 E007 109.804812 1.602129e-04 1.439319e-11 1.594008e-09 11 6216570 6217370 801 - 1.785 2.024 0.802
ENSG00000051009 E008 57.494358 2.698287e-04 7.460634e-05 1.856861e-03 11 6217371 6217804 434 - 1.822 1.653 -0.572
ENSG00000051009 E009 50.695239 2.464910e-03 5.972704e-02 2.451093e-01 11 6217805 6218150 346 - 1.717 1.622 -0.324
ENSG00000051009 E010 3.954318 3.577855e-03 1.389835e-01 3.964565e-01 11 6218558 6218599 42 - 0.780 0.586 -0.817
ENSG00000051009 E011 34.846427 3.966562e-03 8.759623e-03 7.353175e-02 11 6218600 6218763 164 - 1.602 1.445 -0.538
ENSG00000051009 E012 23.230842 6.878522e-04 1.252606e-01 3.751701e-01 11 6218971 6219050 80 - 1.396 1.292 -0.364
ENSG00000051009 E013 36.770591 4.315256e-04 2.536145e-04 5.079259e-03 11 6222442 6222609 168 - 1.649 1.456 -0.662
ENSG00000051009 E014 23.564275 6.126669e-04 3.072718e-05 8.815104e-04 11 6222811 6222897 87 - 1.511 1.245 -0.924
ENSG00000051009 E015 27.625997 1.117900e-02 3.354573e-02 1.742683e-01 11 6223080 6223238 159 - 1.505 1.348 -0.544
ENSG00000051009 E016 52.989298 1.542635e-03 5.562221e-05 1.456276e-03 11 6223610 6224064 455 - 1.800 1.613 -0.634
ENSG00000051009 E017 19.166277 7.803648e-04 2.009410e-03 2.565085e-02 11 6224065 6224248 184 - 1.396 1.176 -0.772
ENSG00000051009 E018 32.413748 1.814889e-03 1.891703e-04 3.994797e-03 11 6224379 6224660 282 - 1.611 1.395 -0.740
ENSG00000051009 E019 10.871729 1.229362e-03 1.376332e-02 9.889565e-02 11 6224661 6224707 47 - 1.171 0.947 -0.817
ENSG00000051009 E020 10.019597 1.618360e-03 4.189878e-02 1.991512e-01 11 6234544 6234566 23 - 1.119 0.926 -0.711
ENSG00000051009 E021 9.158283 1.561531e-03 6.803519e-02 2.632099e-01 11 6234567 6234711 145 - 1.076 0.895 -0.669

Help

Please Click HERE to learn more details about the results from DEXseq.