ENSG00000054282

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000366541 ENSG00000054282 No_inf pgKDN_inf SDCCAG8 protein_coding protein_coding 36.75478 48.99323 33.82973 2.436949 2.593491 -0.534159 15.650887 15.0730784 16.154304 1.2325755 1.2665058 0.09988051 0.46055833 0.313150 0.486050 0.172900 0.30106320 0.00742223 FALSE TRUE
ENST00000463042 ENSG00000054282 No_inf pgKDN_inf SDCCAG8 protein_coding protein_coding_CDS_not_defined 36.75478 48.99323 33.82973 2.436949 2.593491 -0.534159 1.565155 0.9174967 2.555627 0.5370099 0.4807843 1.46789723 0.04380833 0.017825 0.073425 0.055600 0.29473514 0.00742223   FALSE
ENST00000476722 ENSG00000054282 No_inf pgKDN_inf SDCCAG8 protein_coding protein_coding 36.75478 48.99323 33.82973 2.436949 2.593491 -0.534159 3.030613 1.6027328 4.693477 0.7542970 0.5876933 1.54422007 0.09284167 0.034050 0.141200 0.107150 0.18862866 0.00742223 FALSE FALSE
ENST00000490065 ENSG00000054282 No_inf pgKDN_inf SDCCAG8 protein_coding protein_coding_CDS_not_defined 36.75478 48.99323 33.82973 2.436949 2.593491 -0.534159 1.222428 0.0000000 2.432040 0.0000000 2.4320403 7.93194319 0.03519167 0.000000 0.061575 0.061575 0.82291302 0.00742223 FALSE FALSE
MSTRG.2950.16 ENSG00000054282 No_inf pgKDN_inf SDCCAG8 protein_coding   36.75478 48.99323 33.82973 2.436949 2.593491 -0.534159 5.447202 15.2547116 1.086896 1.1069886 0.6275959 -3.79870230 0.11629167 0.313000 0.035875 -0.277125 0.00742223 0.00742223   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000054282 E001 0.3816610 0.0346144220 0.1337229526   1 243256034 243256040 7 + 0.000 0.228 13.060
ENSG00000054282 E002 0.8735269 0.2777019538 0.5170278680 0.772598039 1 243256041 243256061 21 + 0.182 0.333 1.147
ENSG00000054282 E003 12.0111951 0.0012244746 0.6561085981 0.855988416 1 243256062 243256240 179 + 1.130 1.098 -0.116
ENSG00000054282 E004 0.0000000       1 243269136 243269200 65 +      
ENSG00000054282 E005 0.7279134 0.4637643531 0.6999629782 0.877642759 1 243270092 243270104 13 + 0.310 0.165 -1.177
ENSG00000054282 E006 21.4041527 0.0007400958 0.1598352843 0.427373779 1 243270105 243270257 153 + 1.392 1.309 -0.290
ENSG00000054282 E007 14.1276106 0.0010105966 0.8895870559 0.963259416 1 243270978 243271024 47 + 1.170 1.184 0.052
ENSG00000054282 E008 13.5254613 0.0010547426 0.6440969595 0.849233008 1 243271025 243271063 39 + 1.138 1.178 0.142
ENSG00000054282 E009 21.1431019 0.0009160774 0.0882002825 0.307975789 1 243274543 243274656 114 + 1.397 1.294 -0.358
ENSG00000054282 E010 17.0553584 0.0007910321 0.9955580828 1.000000000 1 243286272 243286353 82 + 1.253 1.256 0.013
ENSG00000054282 E011 14.3891831 0.0009422984 0.4921667345 0.754427189 1 243286354 243286382 29 + 1.154 1.210 0.198
ENSG00000054282 E012 11.9180076 0.0012576554 0.7863558317 0.917678118 1 243286383 243286397 15 + 1.095 1.121 0.094
ENSG00000054282 E013 11.7921290 0.0013499500 0.8583643316 0.950616465 1 243293091 243293117 27 + 1.095 1.113 0.067
ENSG00000054282 E014 19.1686286 0.0022321224 0.0680788529 0.263220490 1 243293118 243293219 102 + 1.364 1.245 -0.414
ENSG00000054282 E015 2.1679890 0.0111170108 0.0315086179 0.167575762 1 243293399 243293466 68 + 0.641 0.333 -1.553
ENSG00000054282 E016 2.1584833 0.0115662842 0.0082087722 0.070347278 1 243293467 243293494 28 + 0.667 0.284 -1.982
ENSG00000054282 E017 16.2651585 0.0008611831 0.2322930908 0.520957028 1 243304713 243304777 65 + 1.277 1.197 -0.283
ENSG00000054282 E018 0.2543986 0.0161292855 0.2906071720   1 243304778 243305011 234 + 0.000 0.165 12.481
ENSG00000054282 E019 38.5365225 0.0003577177 0.9769221723 0.996362281 1 243305012 243306548 1537 + 1.594 1.596 0.010
ENSG00000054282 E020 1.8679613 0.0098848101 0.1156784315 0.358583857 1 243307784 243307883 100 + 0.310 0.548 1.285
ENSG00000054282 E021 23.0900454 0.0005950653 0.0852576462 0.301982392 1 243307989 243308177 189 + 1.431 1.333 -0.343
ENSG00000054282 E022 11.7734778 0.0013532947 0.8151830686 0.932413285 1 243316755 243316842 88 + 1.113 1.098 -0.054
ENSG00000054282 E023 8.4842903 0.0136559510 0.6118021726 0.831065492 1 243316843 243316893 51 + 0.944 0.999 0.204
ENSG00000054282 E024 0.1170040 0.0116906497 0.4718558301   1 243316894 243316895 2 + 0.100 0.000 -11.935
ENSG00000054282 E025 19.9448616 0.0007420686 0.2851053945 0.578783524 1 243330540 243330692 153 + 1.277 1.351 0.256
ENSG00000054282 E026 0.0000000       1 243338753 243338940 188 +      
ENSG00000054282 E027 19.6005449 0.0007366082 0.1345281727 0.389941552 1 243341039 243341173 135 + 1.253 1.355 0.358
ENSG00000054282 E028 19.5384673 0.0009348474 0.5954307484 0.822071839 1 243344215 243344331 117 + 1.289 1.328 0.135
ENSG00000054282 E029 23.5184712 0.0019529662 0.6500676802 0.852604983 1 243378721 243378863 143 + 1.401 1.377 -0.084
ENSG00000054282 E030 20.7873180 0.0010067257 0.2459184162 0.536592987 1 243415702 243415829 128 + 1.373 1.304 -0.242
ENSG00000054282 E031 10.0193757 0.0013708827 0.3027208247 0.595852157 1 243417968 243418016 49 + 1.086 0.999 -0.315
ENSG00000054282 E032 10.8713457 0.0012802111 0.2521917357 0.543611729 1 243418017 243418076 60 + 1.121 1.028 -0.337
ENSG00000054282 E033 25.4975702 0.0007145184 0.5938356408 0.821155453 1 243426427 243426558 132 + 1.436 1.409 -0.091
ENSG00000054282 E034 0.1268540 0.0123429119 0.6129075093   1 243472001 243472004 4 + 0.000 0.090 11.481
ENSG00000054282 E035 1.7654059 0.2605589792 0.0224222620 0.136158582 1 243472005 243472013 9 + 0.100 0.601 3.525
ENSG00000054282 E036 4.5315726 0.0527610966 0.0001176646 0.002717826 1 243472014 243472051 38 + 0.310 0.923 2.825
ENSG00000054282 E037 2.8739136 0.1307531246 0.0728313593 0.274154560 1 243473642 243473762 121 + 0.362 0.712 1.674
ENSG00000054282 E038 4.7261976 0.0031334245 0.0264402314 0.150679146 1 243474227 243474411 185 + 0.587 0.859 1.121
ENSG00000054282 E039 9.4488393 0.0016028263 0.0015966076 0.021468820 1 243475931 243476364 434 + 0.827 1.128 1.121
ENSG00000054282 E040 0.2533610 0.0159756568 0.2909281645   1 243487815 243487878 64 + 0.000 0.165 12.481
ENSG00000054282 E041 18.3540164 0.0016860452 0.2129102287 0.498095787 1 243489014 243489140 127 + 1.234 1.323 0.314
ENSG00000054282 E042 0.0000000       1 243499756 243500095 340 +      

Help

Please Click HERE to learn more details about the results from DEXseq.