ENSG00000056097

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000265069 ENSG00000056097 No_inf pgKDN_inf ZFR protein_coding protein_coding 40.19688 35.2364 45.99833 1.450563 1.029343 0.3844192 28.231020 20.486136 35.6255001 0.6190255 0.5552173 0.7979632 0.69811667 0.585650 0.775075 0.189425 0.0196754 0.0196754 FALSE TRUE
ENST00000507465 ENSG00000056097 No_inf pgKDN_inf ZFR protein_coding nonsense_mediated_decay 40.19688 35.2364 45.99833 1.450563 1.029343 0.3844192 2.551315 1.982553 0.5823223 0.5098938 0.5823223 -1.7501641 0.06543333 0.057150 0.012100 -0.045050 0.1922985 0.0196754 TRUE TRUE
ENST00000510369 ENSG00000056097 No_inf pgKDN_inf ZFR protein_coding protein_coding_CDS_not_defined 40.19688 35.2364 45.99833 1.450563 1.029343 0.3844192 5.944466 7.735076 6.4504810 1.5547953 1.0482564 -0.2616378 0.14739167 0.215325 0.139825 -0.075500 0.7098162 0.0196754 FALSE TRUE
ENST00000514356 ENSG00000056097 No_inf pgKDN_inf ZFR protein_coding retained_intron 40.19688 35.2364 45.99833 1.450563 1.029343 0.3844192 3.276568 4.909282 3.0160895 0.5061172 0.5430670 -0.7009931 0.08444167 0.138250 0.066250 -0.072000 0.3362372 0.0196754 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000056097 E001 0.3635961 0.0165392864 0.7743051865   5 32354350 32354350 1 - 0.154 0.108 -0.587
ENSG00000056097 E002 52.4563439 0.0005470587 0.0437194417 0.204223486 5 32354351 32354628 278 - 1.686 1.770 0.286
ENSG00000056097 E003 69.1587244 0.0035114329 0.0692200054 0.265867524 5 32354629 32354851 223 - 1.808 1.885 0.260
ENSG00000056097 E004 181.6660813 0.0008369438 0.0036327355 0.039758108 5 32354852 32355647 796 - 2.228 2.295 0.225
ENSG00000056097 E005 67.4865948 0.0002967077 0.0374057905 0.186282909 5 32355648 32355939 292 - 1.797 1.873 0.256
ENSG00000056097 E006 28.9989226 0.0212943980 0.9272026636 0.978349510 5 32363948 32364045 98 - 1.472 1.478 0.023
ENSG00000056097 E007 32.3170143 0.0004453049 0.2482835398 0.539152250 5 32364164 32364275 112 - 1.546 1.487 -0.203
ENSG00000056097 E008 0.4982566 0.0153034641 0.2014911218   5 32364276 32364938 663 - 0.084 0.267 1.998
ENSG00000056097 E009 31.1417272 0.0004511254 0.5287282164 0.780255832 5 32379115 32379210 96 - 1.519 1.487 -0.111
ENSG00000056097 E010 12.3093239 0.0043012363 0.0038733246 0.041517682 5 32379211 32380074 864 - 0.996 1.240 0.879
ENSG00000056097 E011 32.1421609 0.0073280867 0.8680086001 0.954729802 5 32380075 32380172 98 - 1.522 1.514 -0.027
ENSG00000056097 E012 3.9903528 0.0037498977 0.0002773495 0.005450364 5 32380173 32380424 252 - 0.431 0.891 1.998
ENSG00000056097 E013 1.0069252 0.0116848877 0.0093968150 0.077163188 5 32383761 32383819 59 - 0.084 0.474 3.221
ENSG00000056097 E014 43.3492632 0.0005067756 0.9217307053 0.975713913 5 32385508 32385649 142 - 1.646 1.643 -0.011
ENSG00000056097 E015 48.5018938 0.0039826694 0.3099956883 0.603280200 5 32387549 32387699 151 - 1.713 1.665 -0.165
ENSG00000056097 E016 51.9188492 0.0004634066 0.2601364845 0.552848970 5 32388469 32388674 206 - 1.741 1.695 -0.155
ENSG00000056097 E017 53.7353778 0.0002616461 0.2078281384 0.491515142 5 32390275 32390437 163 - 1.757 1.708 -0.169
ENSG00000056097 E018 44.4906708 0.0028517457 0.9870900438 0.999619881 5 32395159 32395304 146 - 1.654 1.657 0.007
ENSG00000056097 E019 28.7020910 0.0004742648 0.2894836689 0.583107978 5 32397219 32397338 120 - 1.443 1.502 0.204
ENSG00000056097 E020 31.8415330 0.0004172234 0.5409751128 0.788754054 5 32400007 32400203 197 - 1.499 1.532 0.114
ENSG00000056097 E021 39.2411641 0.0004507870 0.1487221973 0.410731885 5 32403106 32403397 292 - 1.631 1.563 -0.231
ENSG00000056097 E022 25.7242760 0.0014952049 0.0002572739 0.005142998 5 32403906 32404097 192 - 1.510 1.287 -0.774
ENSG00000056097 E023 0.0000000       5 32406727 32406773 47 -      
ENSG00000056097 E024 24.1831660 0.0012511175 0.0045482004 0.046362245 5 32406774 32407021 248 - 1.469 1.293 -0.608
ENSG00000056097 E025 20.3100801 0.0007198342 0.0041788521 0.043797553 5 32414969 32415187 219 - 1.401 1.211 -0.665
ENSG00000056097 E026 11.5104764 0.0408433357 0.3257046742 0.618235937 5 32417648 32417792 145 - 1.144 1.025 -0.429
ENSG00000056097 E027 0.0000000       5 32419820 32419820 1 -      
ENSG00000056097 E028 20.5299669 0.0100186521 0.0102015485 0.081343926 5 32419821 32420103 283 - 1.408 1.211 -0.690
ENSG00000056097 E029 11.5959149 0.0012758096 0.0337553067 0.174851970 5 32444229 32444328 100 - 1.170 0.989 -0.655
ENSG00000056097 E030 0.1176306 0.0117550407 0.7135838927   5 32444329 32444496 168 - 0.084 0.000 -7.826
ENSG00000056097 E031 6.3032458 0.0036282042 0.3562627261 0.646066839 5 32444622 32444740 119 - 0.903 0.804 -0.383

Help

Please Click HERE to learn more details about the results from DEXseq.