ENSG00000064763

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000182377 ENSG00000064763 No_inf pgKDN_inf FAR2 protein_coding protein_coding 25.5266 45.98207 18.26616 0.3768363 1.273733 -1.331422 2.2001873 5.884221 0.4592394 1.2414581 0.4592394 -3.6509051 0.05838333 0.127875 0.025350 -0.102525 0.12228217 0.04332907 FALSE TRUE
ENST00000536681 ENSG00000064763 No_inf pgKDN_inf FAR2 protein_coding protein_coding 25.5266 45.98207 18.26616 0.3768363 1.273733 -1.331422 6.0420414 11.320602 6.8055220 3.8011622 2.3476508 -0.7333285 0.21692500 0.248075 0.402700 0.154625 0.85927210 0.04332907 FALSE TRUE
ENST00000549080 ENSG00000064763 No_inf pgKDN_inf FAR2 protein_coding protein_coding_CDS_not_defined 25.5266 45.98207 18.26616 0.3768363 1.273733 -1.331422 1.4504838 2.643195 0.5836981 0.2547696 0.1552172 -2.1599295 0.05971667 0.057475 0.031775 -0.025700 0.71104264 0.04332907   FALSE
ENST00000686419 ENSG00000064763 No_inf pgKDN_inf FAR2 protein_coding protein_coding 25.5266 45.98207 18.26616 0.3768363 1.273733 -1.331422 2.4740778 1.134004 2.8569165 0.6760940 1.8535035 1.3254081 0.14533333 0.024450 0.143650 0.119200 0.58160276 0.04332907 FALSE TRUE
ENST00000686444 ENSG00000064763 No_inf pgKDN_inf FAR2 protein_coding retained_intron 25.5266 45.98207 18.26616 0.3768363 1.273733 -1.331422 0.9453538 0.000000 1.5575564 0.0000000 0.9266047 7.2923735 0.05778333 0.000000 0.078200 0.078200 0.25932569 0.04332907 FALSE FALSE
ENST00000689798 ENSG00000064763 No_inf pgKDN_inf FAR2 protein_coding protein_coding_CDS_not_defined 25.5266 45.98207 18.26616 0.3768363 1.273733 -1.331422 4.5032783 9.647138 2.9024742 1.0569483 1.8700124 -1.7293505 0.13973333 0.209375 0.142700 -0.066675 0.65523290 0.04332907 FALSE TRUE
MSTRG.6255.22 ENSG00000064763 No_inf pgKDN_inf FAR2 protein_coding   25.5266 45.98207 18.26616 0.3768363 1.273733 -1.331422 3.7190075 8.244134 0.0000000 3.1543520 0.0000000 -9.6889730 0.14881667 0.178475 0.000000 -0.178475 0.04332907 0.04332907 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000064763 E001 0.2537694 0.0160447623 1.000000e+00   12 29149016 29149037 22 + 0.000 0.109 10.390
ENSG00000064763 E002 0.2537694 0.0160447623 1.000000e+00   12 29149038 29149049 12 + 0.000 0.109 12.219
ENSG00000064763 E003 0.8885393 0.0127383665 1.080359e-01 0.344686868 12 29149050 29149081 32 + 0.000 0.302 13.883
ENSG00000064763 E004 0.7620323 0.0136811301 1.566278e-01 0.422970232 12 29149082 29149096 15 + 0.000 0.269 13.684
ENSG00000064763 E005 0.7620323 0.0136811301 1.566278e-01 0.422970232 12 29149097 29149102 6 + 0.000 0.269 13.684
ENSG00000064763 E006 0.7620323 0.0136811301 1.566278e-01 0.422970232 12 29149103 29149132 30 + 0.000 0.269 13.684
ENSG00000064763 E007 0.2536433 0.0160326194 1.000000e+00   12 29149133 29149134 2 + 0.000 0.109 12.219
ENSG00000064763 E008 0.7324156 0.0430977677 2.082914e-01 0.492136039 12 29149135 29149198 64 + 0.353 0.155 -1.547
ENSG00000064763 E009 0.4787723 0.0238649967 4.023976e-02   12 29149199 29149209 11 + 0.353 0.058 -3.132
ENSG00000064763 E010 0.7247378 0.0142521336 3.527273e-02 0.179821158 12 29149210 29149262 53 + 0.427 0.109 -2.547
ENSG00000064763 E011 0.3635961 0.0166321403 1.320795e-01   12 29149263 29149277 15 + 0.264 0.058 -2.547
ENSG00000064763 E012 1.6070536 0.1211445551 3.929379e-01 0.677902234 12 29149278 29149302 25 + 0.490 0.332 -0.869
ENSG00000064763 E013 2.3494479 0.0097606438 2.758349e-01 0.569340530 12 29149303 29149319 17 + 0.594 0.434 -0.769
ENSG00000064763 E014 3.8553526 0.0043562060 6.444482e-01 0.849467631 12 29149320 29149351 32 + 0.678 0.618 -0.257
ENSG00000064763 E015 5.8253989 0.0025984395 1.876525e-01 0.465833014 12 29149352 29149407 56 + 0.886 0.736 -0.592
ENSG00000064763 E016 3.2574673 0.0321889331 4.975716e-01 0.758186960 12 29151396 29151874 479 + 0.490 0.603 0.524
ENSG00000064763 E017 5.8727280 0.0024262002 5.144098e-01 0.771059893 12 29171378 29172050 673 + 0.715 0.799 0.341
ENSG00000064763 E018 1.7617835 0.0401425339 3.315031e-01 0.623639980 12 29223665 29223744 80 + 0.264 0.434 1.038
ENSG00000064763 E019 2.7939219 0.0200388457 9.994585e-04 0.015002726 12 29223745 29223894 150 + 0.000 0.618 15.245
ENSG00000064763 E020 0.1265070 0.0123072280 1.000000e+00   12 29260376 29260409 34 + 0.000 0.058 11.274
ENSG00000064763 E021 4.5853034 0.0330825286 3.791828e-01 0.666042836 12 29270412 29270448 37 + 0.780 0.661 -0.488
ENSG00000064763 E022 16.6615295 0.0107172103 3.629721e-01 0.652051298 12 29270449 29270638 190 + 1.238 1.164 -0.262
ENSG00000064763 E023 0.4906372 0.0624546730 3.034702e-01   12 29291416 29291494 79 + 0.264 0.109 -1.547
ENSG00000064763 E024 0.0000000       12 29293300 29293475 176 +      
ENSG00000064763 E025 1.2497482 0.0177070709 6.940299e-01 0.874922217 12 29293476 29294388 913 + 0.264 0.332 0.453
ENSG00000064763 E026 16.2684182 0.0008130039 1.802394e-01 0.455690614 12 29297021 29297200 180 + 1.249 1.147 -0.361
ENSG00000064763 E027 0.4986650 0.0301049777 1.000000e+00   12 29297201 29297929 729 + 0.152 0.155 0.038
ENSG00000064763 E028 0.0000000       12 29302317 29302429 113 +      
ENSG00000064763 E029 30.1971274 0.0004951606 7.222822e-01 0.888341262 12 29307658 29307835 178 + 1.410 1.435 0.086
ENSG00000064763 E030 12.4261282 0.0084444702 3.252347e-01 0.617754818 12 29309186 29309206 21 + 1.132 1.042 -0.324
ENSG00000064763 E031 13.4477204 0.0085658316 7.409283e-01 0.897148601 12 29309207 29309230 24 + 1.118 1.090 -0.101
ENSG00000064763 E032 10.0807360 0.0014302844 5.310488e-04 0.009153591 12 29309231 29311027 1797 + 0.638 1.053 1.623
ENSG00000064763 E033 30.6889316 0.0004642160 8.372669e-01 0.941696056 12 29311028 29311146 119 + 1.424 1.439 0.054
ENSG00000064763 E034 2.7390690 0.0052779437 8.375946e-01 0.941817956 12 29311147 29311882 736 + 0.545 0.517 -0.132
ENSG00000064763 E035 20.8983503 0.0015312014 2.670823e-01 0.560352276 12 29311883 29311950 68 + 1.332 1.256 -0.267
ENSG00000064763 E036 3.3206452 0.0048702662 3.360151e-02 0.174373026 12 29311951 29313721 1771 + 0.780 0.498 -1.225
ENSG00000064763 E037 0.1271363 0.0123454575 1.000000e+00   12 29316711 29316840 130 + 0.000 0.058 11.274
ENSG00000064763 E038 39.7404730 0.0005171575 2.216111e-02 0.135299661 12 29316841 29317012 172 + 1.628 1.514 -0.388
ENSG00000064763 E039 0.7515852 0.3113404953 8.163391e-01 0.933003498 12 29317775 29318471 697 + 0.152 0.234 0.774
ENSG00000064763 E040 0.1268540 0.0123304379 1.000000e+00   12 29319887 29320020 134 + 0.000 0.058 11.274
ENSG00000064763 E041 34.5275280 0.0061752283 1.062296e-01 0.341177043 12 29321795 29321924 130 + 1.558 1.459 -0.339
ENSG00000064763 E042 0.1271363 0.0123454575 1.000000e+00   12 29321925 29321955 31 + 0.000 0.058 11.274
ENSG00000064763 E043 1.2349203 0.1063028545 3.759262e-01 0.663130110 12 29331234 29331370 137 + 0.427 0.269 -0.962
ENSG00000064763 E044 33.7822032 0.0035955420 1.206527e-01 0.367415867 12 29332600 29332727 128 + 1.543 1.453 -0.309
ENSG00000064763 E045 0.0000000       12 29332728 29332844 117 +      
ENSG00000064763 E046 0.0000000       12 29332845 29332908 64 +      
ENSG00000064763 E047 5.3037670 0.0674372563 9.620179e-02 0.323058586 12 29332909 29333631 723 + 0.909 0.674 -0.933
ENSG00000064763 E048 40.3953875 0.0004478324 8.798330e-01 0.959489068 12 29333632 29333734 103 + 1.543 1.554 0.038
ENSG00000064763 E049 266.6250129 0.0001155616 3.820643e-05 0.001060538 12 29333735 29335667 1933 + 2.303 2.377 0.246
ENSG00000064763 E050 0.0000000       12 29340808 29341121 314 +      

Help

Please Click HERE to learn more details about the results from DEXseq.