ENSG00000065029

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000339411 ENSG00000065029 No_inf pgKDN_inf ZNF76 protein_coding protein_coding 23.29449 37.62959 16.8192 8.850047 0.50413 -1.161285 3.812064 2.969284 5.3315688 1.2820701 1.7835072 0.8422981 0.21534167 0.116125 0.326400 0.210275 5.645831e-01 8.547857e-12 FALSE TRUE
ENST00000373953 ENSG00000065029 No_inf pgKDN_inf ZNF76 protein_coding protein_coding 23.29449 37.62959 16.8192 8.850047 0.50413 -1.161285 4.149306 8.719044 1.1199743 1.4398793 1.1199743 -2.9495337 0.16321667 0.258300 0.064300 -0.194000 7.595696e-02 8.547857e-12 FALSE TRUE
ENST00000482946 ENSG00000065029 No_inf pgKDN_inf ZNF76 protein_coding protein_coding_CDS_not_defined 23.29449 37.62959 16.8192 8.850047 0.50413 -1.161285 4.804633 14.413899 0.0000000 8.8082410 0.0000000 -10.4942455 0.09109167 0.273275 0.000000 -0.273275 8.093490e-01 8.547857e-12   FALSE
MSTRG.24577.3 ENSG00000065029 No_inf pgKDN_inf ZNF76 protein_coding   23.29449 37.62959 16.8192 8.850047 0.50413 -1.161285 1.247324 2.930273 0.5024043 0.4102482 0.2446172 -2.5205959 0.04503333 0.086550 0.028775 -0.057775 4.330343e-01 8.547857e-12 TRUE TRUE
MSTRG.24577.5 ENSG00000065029 No_inf pgKDN_inf ZNF76 protein_coding   23.29449 37.62959 16.8192 8.850047 0.50413 -1.161285 3.003680 4.748149 1.9920909 0.4920054 0.3193799 -1.2488929 0.14045833 0.153375 0.120450 -0.032925 9.259292e-01 8.547857e-12 TRUE TRUE
MSTRG.24577.8 ENSG00000065029 No_inf pgKDN_inf ZNF76 protein_coding   23.29449 37.62959 16.8192 8.850047 0.50413 -1.161285 3.692188 0.000000 6.1637900 0.0000000 1.2230964 9.2700126 0.22710000 0.000000 0.361150 0.361150 8.547857e-12 8.547857e-12 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000065029 E001 0.1268540 0.0123032512 0.8595528748   6 35258909 35258981 73 + 0.000 0.078 8.310
ENSG00000065029 E002 0.3809703 0.0242986718 0.2225417669   6 35258982 35259386 405 + 0.000 0.202 11.904
ENSG00000065029 E003 0.0000000       6 35259471 35259497 27 +      
ENSG00000065029 E004 0.4826165 0.4303159669 0.3391725631   6 35259498 35259527 30 + 0.281 0.078 -2.207
ENSG00000065029 E005 0.5996205 0.1440059872 0.0945455979 0.319961240 6 35259528 35259550 23 + 0.345 0.078 -2.620
ENSG00000065029 E006 0.5996205 0.1440059872 0.0945455979 0.319961240 6 35259551 35259603 53 + 0.345 0.078 -2.620
ENSG00000065029 E007 1.2153162 0.0144013187 0.1894466182 0.468161004 6 35259604 35259629 26 + 0.450 0.253 -1.205
ENSG00000065029 E008 4.6503581 0.0046169399 0.1817015810 0.457725038 6 35259630 35259727 98 + 0.830 0.677 -0.620
ENSG00000065029 E009 2.2588132 0.0061595130 0.0394462758 0.192524485 6 35259735 35259773 39 + 0.281 0.598 1.702
ENSG00000065029 E010 3.1183960 0.0046444496 0.1114733308 0.350586559 6 35259774 35259841 68 + 0.450 0.677 1.043
ENSG00000065029 E011 0.6185939 0.0147449790 0.9695558350 0.993749709 6 35270412 35270523 112 + 0.206 0.202 -0.035
ENSG00000065029 E012 17.4142337 0.0014444588 0.8337967630 0.940126157 6 35281056 35281224 169 + 1.240 1.260 0.068
ENSG00000065029 E013 11.5440406 0.0012276906 0.1927574884 0.472567360 6 35286128 35286208 81 + 1.148 1.044 -0.374
ENSG00000065029 E014 1.1341876 0.0116397783 0.0633972550 0.253372920 6 35286209 35286321 113 + 0.115 0.412 2.380
ENSG00000065029 E015 8.4540915 0.0026640263 0.0914648711 0.314048024 6 35286322 35286399 78 + 1.054 0.898 -0.578
ENSG00000065029 E016 0.5072867 0.0509715771 0.1229447974 0.371114140 6 35286400 35286848 449 + 0.000 0.253 12.205
ENSG00000065029 E017 0.1187032 0.0117960485 0.3399883817   6 35287623 35287645 23 + 0.115 0.000 -12.013
ENSG00000065029 E018 20.1530659 0.0007238037 0.1148774658 0.357271436 6 35287646 35287845 200 + 1.370 1.273 -0.337
ENSG00000065029 E019 3.6191625 0.1181753922 0.2263803151 0.514434816 6 35287846 35288315 470 + 0.495 0.728 1.033
ENSG00000065029 E020 1.0067691 0.0137873736 0.1001450956 0.330673784 6 35290253 35290265 13 + 0.115 0.377 2.188
ENSG00000065029 E021 18.6838393 0.0007659753 0.4821684688 0.747084783 6 35290266 35290382 117 + 1.248 1.300 0.184
ENSG00000065029 E022 14.3123312 0.0012132016 0.7659755301 0.909077639 6 35290641 35290716 76 + 1.184 1.165 -0.066
ENSG00000065029 E023 0.8617267 0.0125516604 0.8435209968 0.944109084 6 35290717 35291277 561 + 0.281 0.253 -0.205
ENSG00000065029 E024 17.7308643 0.0008234631 0.3352227195 0.627077627 6 35291278 35291403 126 + 1.297 1.235 -0.216
ENSG00000065029 E025 20.4805214 0.0006885199 0.7471401876 0.900153216 6 35291558 35291737 180 + 1.329 1.313 -0.056
ENSG00000065029 E026 12.7111540 0.0228988130 0.0171726058 0.114627144 6 35291738 35292322 585 + 0.949 1.204 0.928
ENSG00000065029 E027 6.6390667 0.0022180289 0.0015127301 0.020639409 6 35292323 35292539 217 + 0.606 0.977 1.485
ENSG00000065029 E028 1.0051323 0.0134711953 0.0998450572 0.330147956 6 35292540 35292553 14 + 0.115 0.377 2.188
ENSG00000065029 E029 26.2030429 0.0007022141 0.1304662322 0.383192603 6 35292554 35292787 234 + 1.470 1.389 -0.280
ENSG00000065029 E030 22.1034708 0.0006056667 0.8643307696 0.953087577 6 35292881 35293044 164 + 1.341 1.356 0.053
ENSG00000065029 E031 8.3229903 0.0078598756 0.1275535800 0.378713416 6 35293751 35293823 73 + 0.849 1.012 0.613
ENSG00000065029 E032 10.4743472 0.0192117195 0.7648195162 0.908508575 6 35293824 35293915 92 + 1.065 1.036 -0.105
ENSG00000065029 E033 7.4098454 0.0104077994 0.0001265824 0.002876744 6 35293916 35294455 540 + 0.572 1.036 1.854
ENSG00000065029 E034 21.1463323 0.0009173771 0.1295962039 0.381891516 6 35294456 35294569 114 + 1.387 1.296 -0.317
ENSG00000065029 E035 4.2469243 0.0033348070 0.0548420297 0.233256283 6 35294570 35295143 574 + 0.535 0.788 1.081
ENSG00000065029 E036 87.7688815 0.0003453978 0.2911190607 0.584666372 6 35295144 35295985 842 + 1.951 1.925 -0.087

Help

Please Click HERE to learn more details about the results from DEXseq.