ENSG00000065150

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000468620 ENSG00000065150 No_inf pgKDN_inf IPO5 protein_coding retained_intron 29.99441 22.47042 33.00076 4.506798 4.501527 0.5542674 8.323678 7.768917 7.311045 4.574419 4.737205 -0.08751976 0.2332833 0.257050 0.177900 -0.079150 0.99992247 0.04023096 FALSE TRUE
ENST00000490680 ENSG00000065150 No_inf pgKDN_inf IPO5 protein_coding protein_coding 29.99441 22.47042 33.00076 4.506798 4.501527 0.5542674 6.084359 1.577402 7.394417 1.577402 2.547756 2.22171867 0.1854167 0.057025 0.216225 0.159200 0.10663324 0.04023096 FALSE TRUE
MSTRG.7995.19 ENSG00000065150 No_inf pgKDN_inf IPO5 protein_coding   29.99441 22.47042 33.00076 4.506798 4.501527 0.5542674 8.496295 5.280167 14.334788 1.854608 2.312813 1.43914140 0.3015750 0.276150 0.471025 0.194875 0.74799825 0.04023096 FALSE TRUE
MSTRG.7995.25 ENSG00000065150 No_inf pgKDN_inf IPO5 protein_coding   29.99441 22.47042 33.00076 4.506798 4.501527 0.5542674 3.476092 5.159786 0.869609 0.949015 0.869609 -2.55517031 0.1531167 0.284600 0.034900 -0.249700 0.04023096 0.04023096 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000065150 E001 0.0000000       13 97953658 97953674 17 +      
ENSG00000065150 E002 0.0000000       13 97953675 97953682 8 +      
ENSG00000065150 E003 0.0000000       13 97953683 97953693 11 +      
ENSG00000065150 E004 0.0000000       13 97953694 97953713 20 +      
ENSG00000065150 E005 0.0000000       13 97953714 97953716 3 +      
ENSG00000065150 E006 0.1265070 0.0123185147 0.3226076882   13 97953717 97953925 209 + 0.000 0.119 9.799
ENSG00000065150 E007 0.0000000       13 97953926 97953927 2 +      
ENSG00000065150 E008 0.0000000       13 97953928 97953958 31 +      
ENSG00000065150 E009 0.0000000       13 97953959 97954003 45 +      
ENSG00000065150 E010 0.0000000       13 97954004 97954095 92 +      
ENSG00000065150 E011 0.0000000       13 97954096 97954102 7 +      
ENSG00000065150 E012 0.0000000       13 97954103 97954118 16 +      
ENSG00000065150 E013 0.0000000       13 97954119 97954198 80 +      
ENSG00000065150 E014 0.0000000       13 97960192 97960217 26 +      
ENSG00000065150 E015 0.0000000       13 97960218 97960248 31 +      
ENSG00000065150 E016 0.0000000       13 97960249 97960258 10 +      
ENSG00000065150 E017 0.0000000       13 97960259 97960346 88 +      
ENSG00000065150 E018 0.0000000       13 97960347 97960403 57 +      
ENSG00000065150 E019 0.0000000       13 97963160 97963282 123 +      
ENSG00000065150 E020 0.0000000       13 97969723 97969780 58 +      
ENSG00000065150 E021 0.0000000       13 97969781 97969830 50 +      
ENSG00000065150 E022 0.1186381 0.0118668013 0.9383129194   13 97969831 97969905 75 + 0.076 0.000 -12.228
ENSG00000065150 E023 0.0000000       13 97975631 97975890 260 +      
ENSG00000065150 E024 0.3731018 0.0166677457 0.3251056570   13 97975891 97975997 107 + 0.076 0.212 1.723
ENSG00000065150 E025 0.0000000       13 97976465 97976500 36 +      
ENSG00000065150 E026 0.2372762 0.2737096866 0.5277593288   13 97976501 97976502 2 + 0.140 0.000 -12.321
ENSG00000065150 E027 0.7249587 0.0139483126 0.8134628071 0.931710230 13 97976632 97976674 43 + 0.246 0.212 -0.277
ENSG00000065150 E028 0.8413361 0.0175606489 0.6057300814 0.828227894 13 97976675 97976692 18 + 0.291 0.212 -0.599
ENSG00000065150 E029 1.4518401 0.0090304265 0.7392261763 0.896647354 13 97976693 97976702 10 + 0.402 0.354 -0.277
ENSG00000065150 E030 5.6412829 0.0026246347 0.0145611818 0.102955267 13 97976703 97976786 84 + 0.906 0.617 -1.165
ENSG00000065150 E031 0.0000000       13 97976963 97977057 95 +      
ENSG00000065150 E032 0.0000000       13 97979870 97979943 74 +      
ENSG00000065150 E033 0.0000000       13 97981242 97981400 159 +      
ENSG00000065150 E034 0.1265070 0.0123185147 0.3226076882   13 97982055 97982143 89 + 0.000 0.119 12.262
ENSG00000065150 E035 8.3962305 0.0203804132 0.0043512198 0.044992972 13 97982503 97982583 81 + 1.067 0.733 -1.278
ENSG00000065150 E036 0.0000000       13 97982584 97982584 1 +      
ENSG00000065150 E037 14.1675361 0.0010583266 0.0009929026 0.014925085 13 97985421 97985613 193 + 1.259 0.991 -0.962
ENSG00000065150 E038 0.0000000       13 97985614 97985622 9 +      
ENSG00000065150 E039 0.0000000       13 97987990 97988101 112 +      
ENSG00000065150 E040 11.5708891 0.0011715810 0.0424733112 0.200820160 13 97989062 97989164 103 + 1.151 0.977 -0.631
ENSG00000065150 E041 10.7358825 0.0014274131 0.0835470454 0.297979153 13 97990126 97990222 97 + 1.114 0.963 -0.554
ENSG00000065150 E042 11.8789906 0.0014244638 0.7964531089 0.922929377 13 97990433 97990537 105 + 1.108 1.091 -0.062
ENSG00000065150 E043 0.2541163 0.0160070501 0.1153554489   13 97991663 97991696 34 + 0.000 0.212 13.198
ENSG00000065150 E044 17.7754371 0.0009539376 0.1778788679 0.452640663 13 97992892 97993014 123 + 1.298 1.207 -0.322
ENSG00000065150 E045 9.8140431 0.0037428237 0.6891273220 0.872085056 13 97993105 97993149 45 + 1.038 1.005 -0.120
ENSG00000065150 E046 9.1582860 0.0160913769 0.1417545652 0.400596842 13 97993150 97993225 76 + 1.053 0.899 -0.572
ENSG00000065150 E047 10.8943732 0.0128851748 0.0016412760 0.021927318 13 97997531 97997618 88 + 1.168 0.844 -1.199
ENSG00000065150 E048 14.8122448 0.0216601880 0.0840955331 0.299399860 13 98000539 98000645 107 + 1.249 1.079 -0.607
ENSG00000065150 E049 1.7244936 0.0509905739 0.1774191322 0.452003943 13 98000646 98000922 277 + 0.331 0.546 1.137
ENSG00000065150 E050 2.6102341 0.0104878132 0.0024768637 0.029898650 13 98001646 98002466 821 + 0.331 0.757 2.045
ENSG00000065150 E051 6.9108534 0.0020340044 0.8567083937 0.949679585 13 98002467 98002475 9 + 0.895 0.881 -0.055
ENSG00000065150 E052 13.7997437 0.0022949202 0.4078448376 0.690265901 13 98002476 98002591 116 + 1.184 1.123 -0.221
ENSG00000065150 E053 0.3538994 0.0339877201 0.2409506208   13 98002592 98002683 92 + 0.196 0.000 -13.590
ENSG00000065150 E054 13.3822725 0.0072066260 0.0904950854 0.312408752 13 98002684 98002773 90 + 1.200 1.056 -0.518
ENSG00000065150 E055 19.8637998 0.0123172432 0.6649223657 0.860699413 13 98002864 98003008 145 + 1.322 1.291 -0.109
ENSG00000065150 E056 7.1625755 0.0024969928 0.9095908207 0.971289129 13 98003009 98003037 29 + 0.906 0.899 -0.027
ENSG00000065150 E057 31.6125187 0.0106385467 0.5355646531 0.785276649 13 98006130 98006348 219 + 1.519 1.481 -0.130
ENSG00000065150 E058 0.0000000       13 98007362 98007587 226 +      
ENSG00000065150 E059 17.1450329 0.0310400423 0.1785646703 0.453440900 13 98008059 98008142 84 + 1.298 1.162 -0.481
ENSG00000065150 E060 18.5819177 0.0010703488 0.0228624057 0.137864601 13 98009881 98010013 133 + 1.338 1.180 -0.554
ENSG00000065150 E061 24.8699102 0.0006292837 0.8944812523 0.965090659 13 98010103 98010224 122 + 1.405 1.402 -0.011
ENSG00000065150 E062 26.1472381 0.0044664253 0.5852480460 0.815753556 13 98012246 98012342 97 + 1.408 1.448 0.138
ENSG00000065150 E063 40.4392277 0.0163789631 0.3831682237 0.669294134 13 98014042 98014214 173 + 1.580 1.647 0.231
ENSG00000065150 E064 34.1693785 0.0004167327 0.3744695854 0.662098171 13 98015530 98015641 112 + 1.516 1.566 0.172
ENSG00000065150 E065 25.9582829 0.0017367761 0.9641077587 0.992426527 13 98015726 98015781 56 + 1.421 1.423 0.007
ENSG00000065150 E066 33.6535617 0.0028107195 0.7491604115 0.901157919 13 98016729 98016851 123 + 1.521 1.544 0.077
ENSG00000065150 E067 28.8542970 0.0046856677 0.1857975164 0.463711395 13 98018485 98018585 101 + 1.430 1.515 0.293
ENSG00000065150 E068 34.4009754 0.0005211831 0.5052777248 0.764130263 13 98018586 98018704 119 + 1.524 1.563 0.133
ENSG00000065150 E069 0.0000000       13 98019579 98019580 2 +      
ENSG00000065150 E070 50.8185875 0.0014026472 0.0284174021 0.157801893 13 98019581 98019809 229 + 1.662 1.763 0.340
ENSG00000065150 E071 0.0000000       13 98019810 98019941 132 +      
ENSG00000065150 E072 30.2465468 0.0025933548 0.6804745106 0.868151874 13 98020992 98021133 142 + 1.474 1.503 0.099
ENSG00000065150 E073 0.0000000       13 98021134 98021411 278 +      
ENSG00000065150 E074 166.6066697 0.0024752690 0.0003686507 0.006863241 13 98021736 98024296 2561 + 2.172 2.272 0.334

Help

Please Click HERE to learn more details about the results from DEXseq.