ENSG00000066827

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000377838 ENSG00000066827 No_inf pgKDN_inf ZFAT protein_coding protein_coding 6.681398 8.155527 6.41604 1.053916 2.005105 -0.3456159 0.9951693 0.4107612 2.0000116 0.4107612 0.3821550 2.2561301 0.21497500 0.045275 0.459850 0.414575 0.17727533 0.02683819 FALSE TRUE
ENST00000517307 ENSG00000066827 No_inf pgKDN_inf ZFAT protein_coding protein_coding_CDS_not_defined 6.681398 8.155527 6.41604 1.053916 2.005105 -0.3456159 0.8965080 0.3123126 1.0419715 0.3123126 0.7198222 1.7065630 0.09021667 0.031700 0.128650 0.096950 0.75436900 0.02683819 FALSE FALSE
ENST00000518408 ENSG00000066827 No_inf pgKDN_inf ZFAT protein_coding retained_intron 6.681398 8.155527 6.41604 1.053916 2.005105 -0.3456159 1.8320240 4.1621813 0.4753301 0.4058254 0.4753301 -3.1037636 0.24801667 0.535025 0.065325 -0.469700 0.02683819 0.02683819 FALSE TRUE
ENST00000520214 ENSG00000066827 No_inf pgKDN_inf ZFAT protein_coding protein_coding 6.681398 8.155527 6.41604 1.053916 2.005105 -0.3456159 0.9093161 0.3392813 0.9601390 0.3392813 0.5651164 1.4738019 0.20845000 0.034425 0.180775 0.146350 0.77941709 0.02683819 FALSE TRUE
ENST00000520727 ENSG00000066827 No_inf pgKDN_inf ZFAT protein_coding protein_coding 6.681398 8.155527 6.41604 1.053916 2.005105 -0.3456159 0.1244224 0.3732672 0.0000000 0.3732672 0.0000000 -5.2602788 0.02444167 0.073325 0.000000 -0.073325 0.92608207 0.02683819 FALSE TRUE
ENST00000521673 ENSG00000066827 No_inf pgKDN_inf ZFAT protein_coding protein_coding 6.681398 8.155527 6.41604 1.053916 2.005105 -0.3456159 0.5450971 0.0000000 0.6950383 0.0000000 0.6950383 6.1396297 0.04565833 0.000000 0.059300 0.059300 0.78353087 0.02683819 FALSE TRUE
MSTRG.28274.12 ENSG00000066827 No_inf pgKDN_inf ZFAT protein_coding   6.681398 8.155527 6.41604 1.053916 2.005105 -0.3456159 1.0510080 1.9224328 1.2305913 0.7021552 1.2305913 -0.6393903 0.10430833 0.207925 0.105000 -0.102925 0.60293778 0.02683819 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000066827 E001 0.0000000       8 134477788 134477791 4 -      
ENSG00000066827 E002 0.9966955 0.123918883 0.2417058941 0.531375553 8 134477792 134478024 233 - 0.179 0.382 1.468
ENSG00000066827 E003 7.9911753 0.077585412 0.8271323858 0.937432926 8 134478025 134478221 197 - 0.937 0.965 0.106
ENSG00000066827 E004 7.5497240 0.002000781 0.0515881246 0.225303658 8 134478222 134478392 171 - 0.820 1.007 0.710
ENSG00000066827 E005 10.5820685 0.007874860 0.3462765221 0.637082652 8 134478393 134478701 309 - 1.018 1.098 0.289
ENSG00000066827 E006 1.3408470 0.012638640 0.6722225362 0.864217445 8 134478702 134478721 20 - 0.403 0.338 -0.379
ENSG00000066827 E007 2.3387125 0.006118119 0.5978687255 0.823617579 8 134509619 134509700 82 - 0.483 0.555 0.343
ENSG00000066827 E008 1.6133756 0.008411731 0.2050326506 0.488200564 8 134509701 134509708 8 - 0.305 0.494 1.054
ENSG00000066827 E009 3.4899945 0.004493423 0.0117269065 0.089257546 8 134509709 134509749 41 - 0.445 0.774 1.469
ENSG00000066827 E010 0.0000000       8 134510062 134510182 121 -      
ENSG00000066827 E011 0.1265070 0.012392113 0.5783917096   8 134510696 134511082 387 - 0.000 0.092 10.290
ENSG00000066827 E012 3.7538348 0.004489534 0.0013236346 0.018605396 8 134512475 134512524 50 - 0.403 0.822 1.884
ENSG00000066827 E013 3.4633943 0.005242945 0.1844269092 0.461572201 8 134512525 134512573 49 - 0.550 0.719 0.732
ENSG00000066827 E014 2.3189112 0.276491713 0.7316576072 0.893373965 8 134512574 134512601 28 - 0.550 0.494 -0.267
ENSG00000066827 E015 5.6792812 0.005603380 0.2200440135 0.506783407 8 134520883 134521001 119 - 0.747 0.880 0.521
ENSG00000066827 E016 7.0528637 0.003121809 0.0810076322 0.292454003 8 134532834 134532972 139 - 0.803 0.976 0.661
ENSG00000066827 E017 0.0000000       8 134564987 134565152 166 -      
ENSG00000066827 E018 4.2234837 0.003660838 0.0252399981 0.146207218 8 134565333 134565421 89 - 0.550 0.822 1.147
ENSG00000066827 E019 0.2539903 0.016224391 0.2681181770   8 134565422 134565671 250 - 0.000 0.167 11.243
ENSG00000066827 E020 0.8787513 0.012478454 0.0607175555 0.247392962 8 134572546 134572610 65 - 0.099 0.382 2.469
ENSG00000066827 E021 4.0182010 0.003660950 0.2757681978 0.569268649 8 134583832 134583950 119 - 0.767 0.633 -0.557
ENSG00000066827 E022 3.1215418 0.043309014 0.0060511258 0.056857390 8 134583951 134584005 55 - 0.785 0.382 -1.853
ENSG00000066827 E023 3.2311129 0.004704950 0.0003329267 0.006324786 8 134588246 134588395 150 - 0.820 0.338 -2.254
ENSG00000066827 E024 0.7177503 0.013895533 0.0766180022 0.283005687 8 134590268 134590355 88 - 0.357 0.092 -2.438
ENSG00000066827 E025 0.0000000       8 134594807 134594885 79 -      
ENSG00000066827 E026 0.1265070 0.012392113 0.5783917096   8 134597544 134599729 2186 - 0.000 0.092 10.290
ENSG00000066827 E027 0.0000000       8 134599730 134599862 133 -      
ENSG00000066827 E028 0.0000000       8 134599863 134600435 573 -      
ENSG00000066827 E029 0.0000000       8 134600436 134600668 233 -      
ENSG00000066827 E030 13.0628536 0.017073223 0.0009483715 0.014402880 8 134601477 134602806 1330 - 1.281 0.987 -1.056
ENSG00000066827 E031 2.0692026 0.007055820 0.3783843356 0.665355398 8 134602807 134602933 127 - 0.550 0.423 -0.631
ENSG00000066827 E032 0.4812643 0.018697528 0.2853666614   8 134608729 134608739 11 - 0.247 0.092 -1.701
ENSG00000066827 E033 2.1927586 0.009099918 0.5327965473 0.783291964 8 134608740 134608840 101 - 0.550 0.460 -0.438
ENSG00000066827 E034 1.3316914 0.010084002 0.3059729074 0.599258873 8 134608841 134608879 39 - 0.445 0.288 -0.924
ENSG00000066827 E035 2.0654266 0.007398099 0.3817054432 0.668080525 8 134610470 134610655 186 - 0.550 0.423 -0.631
ENSG00000066827 E036 2.4055394 0.022330862 0.0183280916 0.119659520 8 134637461 134637712 252 - 0.683 0.338 -1.701
ENSG00000066827 E037 0.0000000       8 134639775 134639880 106 -      
ENSG00000066827 E038 2.5530741 0.006440943 0.2073751222 0.491017916 8 134657561 134657737 177 - 0.635 0.460 -0.817
ENSG00000066827 E039 0.3815350 0.049288481 0.1217626466   8 134674730 134674888 159 - 0.000 0.232 11.781
ENSG00000066827 E040 0.0000000       8 134696431 134696558 128 -      
ENSG00000066827 E041 1.4609962 0.009292079 0.4829295338 0.747673321 8 134712845 134713049 205 - 0.445 0.338 -0.602

Help

Please Click HERE to learn more details about the results from DEXseq.