ENSG00000071127

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000264785 ENSG00000071127 No_inf pgKDN_inf WDR1 protein_coding protein_coding 254.6568 167.8349 298.6917 2.169442 1.501879 0.8315767 99.470151 63.09786 112.9132 3.264412 7.925956 0.8394509 0.38855833 0.376525 0.377700 0.001175 1.000000e+00 4.102847e-21 FALSE TRUE
ENST00000499869 ENSG00000071127 No_inf pgKDN_inf WDR1 protein_coding protein_coding 254.6568 167.8349 298.6917 2.169442 1.501879 0.8315767 137.061152 76.63095 172.9061 3.040385 5.996089 1.1738850 0.52655000 0.456875 0.579175 0.122300 4.374657e-02 4.102847e-21 FALSE TRUE
ENST00000699792 ENSG00000071127 No_inf pgKDN_inf WDR1 protein_coding protein_coding_CDS_not_defined 254.6568 167.8349 298.6917 2.169442 1.501879 0.8315767 5.826301 17.47890 0.0000 3.664168 0.000000 -10.7722241 0.03445833 0.103375 0.000000 -0.103375 4.102847e-21 4.102847e-21 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000071127 E001 0.0000000       4 10068089 10068100 12 -      
ENSG00000071127 E002 0.0000000       4 10068101 10068123 23 -      
ENSG00000071127 E003 0.0000000       4 10068124 10068148 25 -      
ENSG00000071127 E004 0.2459655 1.658967e-02 6.997576e-01   4 10068149 10068163 15 - 0.076 0.119 0.717
ENSG00000071127 E005 0.9794834 1.209579e-02 4.902268e-01 7.528952e-01 4 10068164 10068342 179 - 0.246 0.353 0.718
ENSG00000071127 E006 7.4455912 4.382800e-03 3.598664e-06 1.413941e-04 4 10068343 10069147 805 - 0.665 1.142 1.827
ENSG00000071127 E007 3.6203321 4.082707e-03 3.972857e-05 1.094342e-03 4 10069148 10069675 528 - 0.369 0.898 2.370
ENSG00000071127 E008 1.6138787 8.682034e-03 2.384298e-02 1.413129e-01 4 10069676 10069818 143 - 0.246 0.583 1.887
ENSG00000071127 E009 0.2447669 1.635853e-02 6.996812e-01   4 10069819 10069824 6 - 0.076 0.119 0.717
ENSG00000071127 E010 1.1175120 1.153816e-02 8.423531e-02 2.997194e-01 4 10069825 10071245 1421 - 0.197 0.460 1.717
ENSG00000071127 E011 0.8617267 1.251584e-02 3.069604e-01 6.002104e-01 4 10071246 10071373 128 - 0.197 0.353 1.133
ENSG00000071127 E012 4.3145716 8.740049e-03 2.596272e-02 1.489969e-01 4 10071374 10073019 1646 - 0.587 0.862 1.132
ENSG00000071127 E013 1.3763786 9.338208e-03 3.093618e-03 3.529748e-02 4 10073991 10074338 348 - 0.140 0.583 2.887
ENSG00000071127 E014 1.4608738 9.156937e-03 7.883952e-01 9.189047e-01 4 10074339 10074359 21 - 0.369 0.410 0.232
ENSG00000071127 E015 44.0660119 3.260643e-04 1.093246e-01 3.470213e-01 4 10074360 10074432 73 - 1.614 1.688 0.251
ENSG00000071127 E016 74.7517423 2.183029e-03 6.180593e-02 2.498117e-01 4 10074433 10074488 56 - 1.839 1.914 0.253
ENSG00000071127 E017 49.5204430 8.548733e-03 2.437807e-01 5.338232e-01 4 10074489 10074490 2 - 1.667 1.733 0.224
ENSG00000071127 E018 48.5520353 9.348975e-03 2.504510e-01 5.415694e-01 4 10074491 10074493 3 - 1.658 1.725 0.229
ENSG00000071127 E019 73.8880048 9.512982e-04 2.410275e-03 2.931217e-02 4 10074494 10074519 26 - 1.816 1.930 0.383
ENSG00000071127 E020 833.1740465 4.736694e-05 5.690748e-26 2.536569e-23 4 10074520 10075148 629 - 2.866 2.973 0.355
ENSG00000071127 E021 84.5996712 6.369251e-04 4.245886e-03 4.427538e-02 4 10075149 10075151 3 - 1.881 1.980 0.333
ENSG00000071127 E022 160.8374678 1.150278e-04 2.331577e-03 2.863146e-02 4 10075152 10075223 72 - 2.169 2.243 0.248
ENSG00000071127 E023 104.8562208 1.516791e-04 9.778231e-02 3.259489e-01 4 10075224 10075254 31 - 1.994 2.045 0.169
ENSG00000071127 E024 150.5288350 1.476943e-03 1.850943e-01 4.626842e-01 4 10075255 10075342 88 - 2.155 2.194 0.131
ENSG00000071127 E025 234.9008878 1.090229e-04 9.847082e-04 1.483499e-02 4 10075343 10075484 142 - 2.335 2.402 0.222
ENSG00000071127 E026 1.0803427 4.879749e-02 3.382997e-01 6.300582e-01 4 10075485 10075565 81 - 0.369 0.212 -1.090
ENSG00000071127 E027 1.5850550 3.514571e-02 5.574044e-01 7.993791e-01 4 10075566 10075688 123 - 0.368 0.460 0.495
ENSG00000071127 E028 2.0763866 2.802362e-02 4.615920e-01 7.322334e-01 4 10075689 10075868 180 - 0.434 0.545 0.548
ENSG00000071127 E029 7.8377181 3.751573e-03 5.480590e-02 2.332011e-01 4 10075869 10077186 1318 - 0.852 1.043 0.717
ENSG00000071127 E030 1.1057993 1.065044e-02 2.877563e-01 5.812713e-01 4 10077187 10077303 117 - 0.246 0.410 1.039
ENSG00000071127 E031 297.1545818 7.233379e-05 7.273502e-02 2.739640e-01 4 10077304 10077448 145 - 2.452 2.484 0.108
ENSG00000071127 E032 321.5784078 1.137306e-04 3.797467e-01 6.663822e-01 4 10077753 10077926 174 - 2.493 2.508 0.052
ENSG00000071127 E033 248.4382844 4.899097e-04 7.811785e-01 9.157991e-01 4 10078891 10079001 111 - 2.389 2.384 -0.018
ENSG00000071127 E034 2.0730731 1.512602e-01 7.553755e-01 9.035894e-01 4 10079002 10079039 38 - 0.464 0.505 0.201
ENSG00000071127 E035 199.3644363 8.195686e-04 8.989898e-03 7.490517e-02 4 10081357 10081444 88 - 2.317 2.252 -0.216
ENSG00000071127 E036 281.6650281 7.051643e-05 1.735218e-03 2.287078e-02 4 10083022 10083178 157 - 2.464 2.406 -0.192
ENSG00000071127 E037 0.3703650 1.667291e-02 3.219847e-01   4 10084424 10084442 19 - 0.076 0.212 1.717
ENSG00000071127 E038 161.1686890 1.423237e-04 7.732425e-02 2.844487e-01 4 10084443 10084530 88 - 2.217 2.174 -0.145
ENSG00000071127 E039 9.1328895 1.438430e-03 7.991120e-05 1.970705e-03 4 10084531 10085234 704 - 0.815 1.180 1.351
ENSG00000071127 E040 0.8809224 1.270320e-02 9.700400e-03 7.880283e-02 4 10087706 10087706 1 - 0.076 0.460 3.302
ENSG00000071127 E041 108.8763226 1.463354e-04 7.138205e-02 2.707207e-01 4 10087707 10087775 69 - 2.052 1.998 -0.180
ENSG00000071127 E042 111.7734634 2.476083e-03 1.274020e-01 3.785214e-01 4 10087776 10087841 66 - 2.063 2.009 -0.183
ENSG00000071127 E043 170.7004091 2.262092e-03 7.286618e-01 8.918299e-01 4 10087842 10087935 94 - 2.229 2.219 -0.035
ENSG00000071127 E044 94.4320207 2.672057e-04 3.136351e-01 6.067567e-01 4 10087936 10087940 5 - 1.983 1.950 -0.108
ENSG00000071127 E045 0.0000000       4 10088287 10088292 6 -      
ENSG00000071127 E046 176.5530680 2.054083e-04 1.071021e-02 8.403323e-02 4 10088293 10088373 81 - 2.263 2.202 -0.203
ENSG00000071127 E047 2.4228032 9.876384e-02 8.880049e-01 9.625334e-01 4 10088374 10088532 159 - 0.542 0.505 -0.176
ENSG00000071127 E048 169.3771399 1.088282e-04 6.169065e-03 5.760174e-02 4 10088664 10088741 78 - 2.247 2.181 -0.220
ENSG00000071127 E049 2.3147253 5.872251e-03 7.071349e-01 8.811693e-01 4 10091523 10092867 1345 - 0.491 0.545 0.258
ENSG00000071127 E050 0.2357071 1.569270e-02 4.655599e-01   4 10092868 10092979 112 - 0.140 0.000 -12.723
ENSG00000071127 E051 0.0000000       4 10092980 10093034 55 -      
ENSG00000071127 E052 0.1268540 1.233727e-02 3.200762e-01   4 10093043 10093155 113 - 0.000 0.119 11.827
ENSG00000071127 E053 0.1271363 1.233406e-02 3.200637e-01   4 10093909 10094128 220 - 0.000 0.119 11.827
ENSG00000071127 E054 0.6166774 2.118780e-02 3.231737e-01 6.158517e-01 4 10094683 10094896 214 - 0.140 0.288 1.302
ENSG00000071127 E055 0.0000000       4 10095945 10096325 381 -      
ENSG00000071127 E056 0.1271363 1.233406e-02 3.200637e-01   4 10096326 10096420 95 - 0.000 0.119 11.827
ENSG00000071127 E057 0.3709943 1.668755e-02 3.220252e-01   4 10096421 10096705 285 - 0.076 0.212 1.718
ENSG00000071127 E058 79.0637408 1.809938e-04 7.438470e-02 2.780918e-01 4 10097711 10097711 1 - 1.917 1.855 -0.210
ENSG00000071127 E059 262.8343809 8.806953e-05 2.092090e-07 1.134018e-05 4 10097712 10097843 132 - 2.449 2.348 -0.336
ENSG00000071127 E060 155.3865446 1.496132e-04 1.953258e-09 1.574694e-07 4 10097844 10097891 48 - 2.239 2.085 -0.518
ENSG00000071127 E061 0.2373413 1.573295e-02 4.655095e-01   4 10098990 10098991 2 - 0.140 0.000 -12.722
ENSG00000071127 E062 239.3517985 8.223090e-05 1.269928e-05 4.196831e-04 4 10098992 10099139 148 - 2.404 2.316 -0.295
ENSG00000071127 E063 148.6888038 1.289179e-04 1.712603e-03 2.264465e-02 4 10103896 10103986 91 - 2.196 2.115 -0.270
ENSG00000071127 E064 0.0000000       4 10106429 10106466 38 -      
ENSG00000071127 E065 0.0000000       4 10106467 10106550 84 -      
ENSG00000071127 E066 0.3629695 1.667818e-02 9.779528e-01   4 10108218 10108395 178 - 0.140 0.119 -0.283
ENSG00000071127 E067 5.0289361 2.214483e-02 6.113580e-02 2.483466e-01 4 10112084 10115755 3672 - 0.665 0.898 0.929
ENSG00000071127 E068 1.2430106 9.830801e-03 4.182501e-02 1.990110e-01 4 10115756 10116112 357 - 0.197 0.505 1.940
ENSG00000071127 E069 135.9262525 1.242801e-04 1.784701e-09 1.449640e-07 4 10116113 10116234 122 - 2.185 2.019 -0.555
ENSG00000071127 E070 0.2363338 1.571534e-02 4.654945e-01   4 10116235 10116330 96 - 0.140 0.000 -12.722
ENSG00000071127 E071 1.6567321 8.541618e-03 8.587564e-03 7.253903e-02 4 10116331 10116504 174 - 0.542 0.119 -2.983
ENSG00000071127 E072 77.4061687 1.964156e-03 1.872175e-05 5.828437e-04 4 10116651 10116972 322 - 1.946 1.771 -0.587

Help

Please Click HERE to learn more details about the results from DEXseq.