ENSG00000071626

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000233078 ENSG00000071626 No_inf pgKDN_inf DAZAP1 protein_coding protein_coding 103.3837 71.56757 112.894 1.837353 3.552408 0.6575177 40.230063 20.918966 53.058574 7.7278747 3.4421249 1.34235672 0.38353333 0.299675 0.474125 0.174450 8.294785e-01 1.150799e-06 FALSE TRUE
ENST00000585485 ENSG00000071626 No_inf pgKDN_inf DAZAP1 protein_coding retained_intron 103.3837 71.56757 112.894 1.837353 3.552408 0.6575177 8.465702 12.271534 4.141361 0.4134765 0.2146755 -1.56483454 0.09325000 0.171500 0.036900 -0.134600 1.150799e-06 1.150799e-06 FALSE FALSE
ENST00000587079 ENSG00000071626 No_inf pgKDN_inf DAZAP1 protein_coding protein_coding 103.3837 71.56757 112.894 1.837353 3.552408 0.6575177 12.344601 7.703515 14.732235 4.6107257 1.9813917 0.93449479 0.11700833 0.104025 0.130750 0.026725 6.653248e-01 1.150799e-06 FALSE TRUE
ENST00000592453 ENSG00000071626 No_inf pgKDN_inf DAZAP1 protein_coding protein_coding 103.3837 71.56757 112.894 1.837353 3.552408 0.6575177 10.778120 1.686546 9.608691 1.6865457 5.5546893 2.50324024 0.08798333 0.021925 0.081450 0.059525 8.503023e-01 1.150799e-06 FALSE TRUE
ENST00000592522 ENSG00000071626 No_inf pgKDN_inf DAZAP1 protein_coding protein_coding 103.3837 71.56757 112.894 1.837353 3.552408 0.6575177 7.478585 7.788869 7.909572 1.1767029 1.5754689 0.02215755 0.07744167 0.108575 0.069300 -0.039275 6.395726e-01 1.150799e-06 FALSE TRUE
MSTRG.14192.1 ENSG00000071626 No_inf pgKDN_inf DAZAP1 protein_coding   103.3837 71.56757 112.894 1.837353 3.552408 0.6575177 13.978260 9.266398 15.824620 2.6510555 1.2679695 0.77144564 0.13402500 0.127175 0.140075 0.012900 8.760027e-01 1.150799e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000071626 E001 1.5479800 0.1414284729 7.266256e-02 2.737293e-01 19 1407545 1407568 24 + 0.524 0.194 -2.054
ENSG00000071626 E002 3.1160662 0.0283592718 4.485723e-02 2.070791e-01 19 1407569 1407585 17 + 0.721 0.429 -1.335
ENSG00000071626 E003 6.9783557 0.0089604809 8.328945e-03 7.104433e-02 19 1407586 1407612 27 + 1.007 0.718 -1.117
ENSG00000071626 E004 16.9312296 0.0007932044 1.054242e-02 8.316856e-02 19 1407613 1407676 64 + 1.323 1.144 -0.629
ENSG00000071626 E005 12.1142494 0.0011686542 8.612351e-02 3.040001e-01 19 1407677 1407679 3 + 1.171 1.035 -0.491
ENSG00000071626 E006 26.8542894 0.0004851382 2.033692e-03 2.586304e-02 19 1407680 1407734 55 + 1.512 1.339 -0.598
ENSG00000071626 E007 39.2539233 0.0003506846 7.436230e-06 2.643808e-04 19 1407735 1407802 68 + 1.686 1.473 -0.727
ENSG00000071626 E008 0.3631878 0.0165670201 7.579408e-01   19 1409824 1409858 35 + 0.154 0.108 -0.598
ENSG00000071626 E009 1.7322897 0.0829337709 1.569306e-01 4.232795e-01 19 1409859 1410079 221 + 0.315 0.548 1.250
ENSG00000071626 E010 1.1329348 0.1420072159 1.524179e-02 1.063180e-01 19 1415740 1415940 201 + 0.084 0.512 3.400
ENSG00000071626 E011 2.8817236 0.0222430443 2.621953e-04 5.214323e-03 19 1415970 1416456 487 + 0.268 0.802 2.650
ENSG00000071626 E012 1.9848053 0.0069400314 4.433932e-02 2.058527e-01 19 1416457 1416555 99 + 0.315 0.612 1.540
ENSG00000071626 E013 5.4838919 0.0025662240 2.735332e-05 8.022152e-04 19 1416556 1417499 944 + 0.524 1.012 1.987
ENSG00000071626 E014 40.1751075 0.0003564294 4.295301e-04 7.740153e-03 19 1417500 1417540 41 + 1.678 1.516 -0.553
ENSG00000071626 E015 82.2713618 0.0003247032 5.616027e-05 1.466093e-03 19 1418204 1418370 167 + 1.971 1.843 -0.432
ENSG00000071626 E016 49.8333251 0.0078667736 9.522453e-04 1.444681e-02 19 1418666 1418731 66 + 1.775 1.597 -0.603
ENSG00000071626 E017 3.8823188 0.0935370452 1.395119e-03 1.933805e-02 19 1419647 1420423 777 + 0.358 0.905 2.460
ENSG00000071626 E018 23.1220849 0.0005952566 2.844937e-06 1.151079e-04 19 1421148 1421150 3 + 1.489 1.194 -1.027
ENSG00000071626 E019 74.2273827 0.0002149822 2.118382e-08 1.415772e-06 19 1421151 1421258 108 + 1.950 1.758 -0.648
ENSG00000071626 E020 50.3561918 0.0060940072 5.890220e-02 2.433608e-01 19 1422348 1422396 49 + 1.748 1.655 -0.314
ENSG00000071626 E021 62.1590128 0.0081601400 1.101769e-09 9.313919e-08 19 1422397 1424273 1877 + 1.620 1.948 1.110
ENSG00000071626 E022 64.8171704 0.0002360234 1.485416e-04 3.278004e-03 19 1425878 1425960 83 + 1.872 1.736 -0.459
ENSG00000071626 E023 113.5986777 0.0001540989 5.902291e-95 3.537046e-91 19 1426349 1428841 2493 + 1.670 2.293 2.095
ENSG00000071626 E024 123.7899761 0.0001565358 6.031029e-02 2.464410e-01 19 1428842 1428995 154 + 2.113 2.070 -0.143
ENSG00000071626 E025 52.1030531 0.0002845974 4.211602e-01 7.003408e-01 19 1429967 1429996 30 + 1.734 1.708 -0.088
ENSG00000071626 E026 100.2476472 0.0013800755 1.423356e-01 4.013975e-01 19 1430222 1430362 141 + 2.021 1.980 -0.137
ENSG00000071626 E027 1.9807816 0.1020258118 2.029064e-01 4.854956e-01 19 1432043 1432513 471 + 0.358 0.581 1.138
ENSG00000071626 E028 117.5176251 0.0001497585 7.979351e-03 6.903753e-02 19 1432514 1432690 177 + 2.100 2.034 -0.219
ENSG00000071626 E029 5.8917385 0.0325824278 1.671552e-06 7.277191e-05 19 1432691 1433738 1048 + 0.432 1.078 2.687
ENSG00000071626 E030 1.7245202 0.0088188473 3.136496e-01 6.067567e-01 19 1433739 1433827 89 + 0.357 0.512 0.817
ENSG00000071626 E031 8.8874984 0.0015046223 3.096489e-10 2.874458e-08 19 1433828 1434736 909 + 0.600 1.231 2.428
ENSG00000071626 E032 33.9519119 0.0004703566 2.288156e-02 1.379493e-01 19 1434737 1434739 3 + 1.588 1.477 -0.379
ENSG00000071626 E033 315.2527858 0.0001105709 2.656778e-01 5.590303e-01 19 1434740 1435687 948 + 2.487 2.511 0.083

Help

Please Click HERE to learn more details about the results from DEXseq.