ENSG00000072756

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000251607 ENSG00000072756 No_inf pgKDN_inf TRNT1 protein_coding protein_coding 31.71321 41.1175 26.92118 0.9078008 1.091714 -0.6108258 3.0756248 0.4455963 5.361084 0.4455963 0.8790733 3.5593854 0.11270833 0.01025 0.196125 0.185875 0.002828378 0.002828378 FALSE TRUE
ENST00000469632 ENSG00000072756 No_inf pgKDN_inf TRNT1 protein_coding protein_coding_CDS_not_defined 31.71321 41.1175 26.92118 0.9078008 1.091714 -0.6108258 20.8101445 29.8834154 14.879157 0.7647151 1.0450990 -1.0055657 0.64244167 0.72675 0.550850 -0.175900 0.025472358 0.002828378 FALSE TRUE
ENST00000650755 ENSG00000072756 No_inf pgKDN_inf TRNT1 protein_coding nonsense_mediated_decay 31.71321 41.1175 26.92118 0.9078008 1.091714 -0.6108258 0.4912846 0.1184126 1.355441 0.1184126 1.3554413 3.4105090 0.01969167 0.00285 0.056225 0.053375 0.929112363 0.002828378 FALSE TRUE
ENST00000698406 ENSG00000072756 No_inf pgKDN_inf TRNT1 protein_coding protein_coding 31.71321 41.1175 26.92118 0.9078008 1.091714 -0.6108258 2.2095365 3.9569848 2.128965 0.4043310 0.8053228 -0.8911298 0.06446667 0.09575 0.077200 -0.018550 0.842682558 0.002828378 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000072756 E001 0.0000000       3 3126933 3126939 7 +      
ENSG00000072756 E002 0.2356421 0.0158162757 2.136233e-01   3 3126940 3126947 8 + 0.180 0.000 -12.188
ENSG00000072756 E003 0.2356421 0.0158162757 2.136233e-01   3 3126948 3126948 1 + 0.180 0.000 -14.673
ENSG00000072756 E004 0.2356421 0.0158162757 2.136233e-01   3 3126949 3126950 2 + 0.180 0.000 -14.673
ENSG00000072756 E005 0.2356421 0.0158162757 2.136233e-01   3 3126951 3126951 1 + 0.180 0.000 -14.673
ENSG00000072756 E006 0.2356421 0.0158162757 2.136233e-01   3 3126952 3126953 2 + 0.180 0.000 -14.673
ENSG00000072756 E007 0.5988299 0.0143562548 1.446647e-01 4.048211e-01 3 3126954 3126962 9 + 0.307 0.091 -2.139
ENSG00000072756 E008 0.5988299 0.0143562548 1.446647e-01 4.048211e-01 3 3126963 3126964 2 + 0.307 0.091 -2.139
ENSG00000072756 E009 0.5988299 0.0143562548 1.446647e-01 4.048211e-01 3 3126965 3126965 1 + 0.307 0.091 -2.139
ENSG00000072756 E010 1.4441259 0.0096174088 5.748348e-02 2.397212e-01 3 3126966 3126969 4 + 0.520 0.230 -1.724
ENSG00000072756 E011 1.4441259 0.0096174088 5.748348e-02 2.397212e-01 3 3126970 3126972 3 + 0.520 0.230 -1.724
ENSG00000072756 E012 2.5518417 0.0106072582 2.039362e-01 4.866350e-01 3 3126973 3126979 7 + 0.637 0.457 -0.840
ENSG00000072756 E013 3.0429559 0.0155338066 2.416424e-01 5.313541e-01 3 3126980 3126990 11 + 0.686 0.523 -0.725
ENSG00000072756 E014 0.0000000       3 3126991 3127007 17 +      
ENSG00000072756 E015 0.0000000       3 3127008 3127019 12 +      
ENSG00000072756 E016 0.1176306 0.0119352260 4.926718e-01   3 3127020 3127055 36 + 0.099 0.000 -13.813
ENSG00000072756 E017 0.1176306 0.0119352260 4.926718e-01   3 3127056 3127060 5 + 0.099 0.000 -13.813
ENSG00000072756 E018 0.7088062 0.2552487200 2.390120e-02 1.415180e-01 3 3127061 3127289 229 + 0.405 0.000 -15.645
ENSG00000072756 E019 1.4544831 0.0093435079 1.934016e-01 4.731550e-01 3 3127290 3127945 656 + 0.485 0.286 -1.140
ENSG00000072756 E020 0.3631878 0.0168005391 5.309980e-01   3 3127946 3128018 73 + 0.180 0.091 -1.139
ENSG00000072756 E021 7.9037417 0.0191053594 7.628793e-02 2.822994e-01 3 3129014 3129154 141 + 1.042 0.849 -0.724
ENSG00000072756 E022 3.8037687 0.0038826504 9.502272e-01 9.871440e-01 3 3129155 3129188 34 + 0.686 0.675 -0.046
ENSG00000072756 E023 1.5035176 0.0091059640 2.454185e-02 1.438195e-01 3 3129189 3129918 730 + 0.180 0.523 2.183
ENSG00000072756 E024 8.1188864 0.0017451696 3.455538e-05 9.743707e-04 3 3129919 3131289 1371 + 0.686 1.102 1.598
ENSG00000072756 E025 0.8697826 0.0140931868 3.046110e-01 5.980023e-01 3 3131290 3132660 1371 + 0.180 0.336 1.183
ENSG00000072756 E026 2.7396573 0.0767185142 1.125845e-01 3.529899e-01 3 3135751 3136675 925 + 0.405 0.675 1.276
ENSG00000072756 E027 0.1265070 0.0123380284 5.869237e-01   3 3136676 3136680 5 + 0.000 0.091 12.589
ENSG00000072756 E028 0.5070043 0.0160284830 5.505255e-02 2.337404e-01 3 3136681 3136699 19 + 0.000 0.286 14.332
ENSG00000072756 E029 1.1323973 0.0110131649 1.934148e-02 1.242548e-01 3 3136700 3136797 98 + 0.099 0.457 2.861
ENSG00000072756 E030 2.0034083 0.0072738518 1.606069e-02 1.098982e-01 3 3136798 3137259 462 + 0.248 0.606 1.976
ENSG00000072756 E031 8.2403922 0.0019302731 6.152439e-01 8.329793e-01 3 3137260 3137355 96 + 0.940 0.984 0.163
ENSG00000072756 E032 8.8133860 0.0037873199 5.517411e-01 7.955090e-01 3 3137356 3137453 98 + 1.021 0.962 -0.220
ENSG00000072756 E033 0.2372762 0.2397333236 2.647685e-01   3 3139589 3139710 122 + 0.180 0.000 -14.386
ENSG00000072756 E034 5.2460291 0.0709042088 3.803508e-01 6.668981e-01 3 3140510 3140539 30 + 0.855 0.735 -0.478
ENSG00000072756 E035 5.0011662 0.0448339974 3.472588e-01 6.378401e-01 3 3140540 3140578 39 + 0.840 0.716 -0.494
ENSG00000072756 E036 6.1073792 0.0024633469 3.800135e-01 6.666335e-01 3 3140579 3140648 70 + 0.900 0.804 -0.371
ENSG00000072756 E037 0.0000000       3 3140649 3140728 80 +      
ENSG00000072756 E038 0.0000000       3 3142894 3143058 165 +      
ENSG00000072756 E039 3.3066486 0.0384013558 7.147703e-01 8.850613e-01 3 3144584 3144710 127 + 0.662 0.606 -0.247
ENSG00000072756 E040 0.0000000       3 3144711 3145294 584 +      
ENSG00000072756 E041 4.3627910 0.0033663956 7.524847e-03 6.631456e-02 3 3145558 3146415 858 + 0.520 0.849 1.391
ENSG00000072756 E042 0.3618970 0.0168551331 5.299360e-01   3 3146416 3146429 14 + 0.180 0.091 -1.139
ENSG00000072756 E043 7.4151516 0.0018076259 4.304255e-02 2.023585e-01 3 3146430 3146563 134 + 1.021 0.819 -0.764
ENSG00000072756 E044 6.0781563 0.0070007965 9.260768e-02 3.161004e-01 3 3146564 3146623 60 + 0.940 0.753 -0.724
ENSG00000072756 E045 14.9046075 0.0011091142 1.552493e-01 4.211032e-01 3 3147450 3147703 254 + 1.254 1.148 -0.377
ENSG00000072756 E046 17.6497478 0.0078889687 1.446155e-02 1.025196e-01 3 3147906 3148187 282 + 1.359 1.176 -0.642
ENSG00000072756 E047 30.4009606 0.0006211953 4.269254e-02 2.013448e-01 3 3148188 3149093 906 + 1.549 1.444 -0.360
ENSG00000072756 E048 0.0000000       3 3149094 3149233 140 +      
ENSG00000072756 E049 0.0000000       3 3149234 3150539 1306 +      
ENSG00000072756 E050 20.9607458 0.0084984249 1.152336e-04 2.670824e-03 3 3150540 3152413 1874 + 1.172 1.444 0.951
ENSG00000072756 E051 19.9224703 0.0051560564 3.604415e-07 1.847914e-05 3 3152414 3153435 1022 + 1.090 1.448 1.259

Help

Please Click HERE to learn more details about the results from DEXseq.