ENSG00000075539

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000358350 ENSG00000075539 No_inf pgKDN_inf FRYL protein_coding protein_coding 19.26719 20.66791 19.8349 1.430353 0.902749 -0.05932187 0.6565126 1.9695377 0.0000000 0.6819599 0.0000000 -7.6290197 0.03129167 0.093875 0.000000 -0.093875 0.04677351 0.04668131 FALSE TRUE
ENST00000503339 ENSG00000075539 No_inf pgKDN_inf FRYL protein_coding retained_intron 19.26719 20.66791 19.8349 1.430353 0.902749 -0.05932187 6.8658747 8.7328062 6.5877994 0.5404375 0.2191026 -0.4061115 0.35459167 0.424650 0.333400 -0.091250 0.69178542 0.04668131 FALSE TRUE
ENST00000509886 ENSG00000075539 No_inf pgKDN_inf FRYL protein_coding protein_coding_CDS_not_defined 19.26719 20.66791 19.8349 1.430353 0.902749 -0.05932187 1.0008226 1.1552800 0.3868323 0.4681515 0.3868323 -1.5540751 0.05239167 0.059675 0.017400 -0.042275 0.56445030 0.04668131   FALSE
ENST00000512810 ENSG00000075539 No_inf pgKDN_inf FRYL protein_coding protein_coding_CDS_not_defined 19.26719 20.66791 19.8349 1.430353 0.902749 -0.05932187 3.2716441 4.0633669 2.8644377 0.9377969 1.1246950 -0.5029420 0.16459167 0.193075 0.138075 -0.055000 0.83347645 0.04668131 FALSE TRUE
ENST00000641795 ENSG00000075539 No_inf pgKDN_inf FRYL protein_coding protein_coding 19.26719 20.66791 19.8349 1.430353 0.902749 -0.05932187 3.5711908 2.3638674 4.7033254 0.2338248 0.4146534 0.9895059 0.19145000 0.117900 0.240475 0.122575 0.38493190 0.04668131 FALSE TRUE
MSTRG.21762.2 ENSG00000075539 No_inf pgKDN_inf FRYL protein_coding   19.26719 20.66791 19.8349 1.430353 0.902749 -0.05932187 2.2113439 0.3379591 3.0212910 0.3379591 0.4184179 3.1229427 0.12231667 0.018625 0.155775 0.137150 0.04668131 0.04668131 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000075539 E001 0.1272623 0.0123292938 4.706259e-01   4 48497357 48497366 10 - 0.000 0.101 9.827
ENSG00000075539 E002 3.2196281 0.0382657304 8.930225e-02 3.102461e-01 4 48497367 48497540 174 - 0.485 0.737 1.116
ENSG00000075539 E003 1.7247068 0.0102383342 4.399924e-01 7.158105e-01 4 48497541 48497566 26 - 0.375 0.491 0.613
ENSG00000075539 E004 67.4328573 0.0002648623 4.993256e-10 4.526156e-08 4 48497567 48498315 749 - 1.714 1.936 0.748
ENSG00000075539 E005 28.8807003 0.0018259509 4.542626e-01 7.270079e-01 4 48498316 48498545 230 - 1.454 1.497 0.150
ENSG00000075539 E006 82.7662349 0.0002341422 5.072888e-01 7.657476e-01 4 48498546 48499253 708 - 1.912 1.934 0.075
ENSG00000075539 E007 52.6194661 0.0003093620 3.503292e-01 6.405619e-01 4 48499254 48499680 427 - 1.710 1.749 0.131
ENSG00000075539 E008 18.8128464 0.0046764159 5.562675e-02 2.349729e-01 4 48500030 48500220 191 - 1.224 1.362 0.482
ENSG00000075539 E009 13.3930202 0.0011321473 1.198204e-01 3.658096e-01 4 48501623 48501733 111 - 1.094 1.217 0.437
ENSG00000075539 E010 0.3812526 0.0158889905 7.967982e-02   4 48502828 48502845 18 - 0.000 0.252 14.020
ENSG00000075539 E011 10.2592081 0.0014444919 9.672032e-01 9.933757e-01 4 48505547 48505615 69 - 1.052 1.050 -0.008
ENSG00000075539 E012 4.9633933 0.0451753675 1.331001e-02 9.677301e-02 4 48505616 48506612 997 - 0.573 0.921 1.421
ENSG00000075539 E013 10.5190438 0.0014023832 6.865946e-01 8.705723e-01 4 48510059 48510157 99 - 1.044 1.080 0.131
ENSG00000075539 E014 15.1137718 0.0009225085 4.895513e-01 7.525140e-01 4 48510835 48510984 150 - 1.230 1.181 -0.176
ENSG00000075539 E015 19.2213924 0.0010097523 4.495492e-01 7.231783e-01 4 48512481 48512688 208 - 1.280 1.331 0.180
ENSG00000075539 E016 17.1463692 0.0037137162 4.504082e-01 7.237395e-01 4 48515028 48515208 181 - 1.230 1.287 0.198
ENSG00000075539 E017 7.6864084 0.0037379591 7.326874e-01 8.937417e-01 4 48515209 48515275 67 - 0.954 0.921 -0.123
ENSG00000075539 E018 0.1271363 0.0123311191 4.705495e-01   4 48520524 48520685 162 - 0.000 0.101 12.564
ENSG00000075539 E019 7.4155230 0.0019686184 2.545700e-01 5.462928e-01 4 48521048 48521093 46 - 0.976 0.863 -0.426
ENSG00000075539 E020 11.0231078 0.0012347301 2.732162e-02 1.538287e-01 4 48521094 48521215 122 - 1.161 0.973 -0.684
ENSG00000075539 E021 18.8541820 0.0009343182 1.806278e-01 4.562561e-01 4 48522901 48523104 204 - 1.338 1.250 -0.309
ENSG00000075539 E022 0.0000000       4 48523488 48523496 9 -      
ENSG00000075539 E023 13.2652389 0.0075289066 3.839207e-01 6.700333e-01 4 48527477 48527653 177 - 1.187 1.116 -0.255
ENSG00000075539 E024 6.1733130 0.0406163844 1.161151e-01 3.592766e-01 4 48527971 48528045 75 - 0.943 0.737 -0.802
ENSG00000075539 E025 11.6466513 0.0011926391 7.164430e-02 2.712766e-01 4 48528175 48528336 162 - 1.168 1.019 -0.539
ENSG00000075539 E026 7.8801769 0.0156979844 1.477465e-01 4.091266e-01 4 48531156 48531300 145 - 1.016 0.863 -0.574
ENSG00000075539 E027 4.3481454 0.0041413534 1.103214e-01 3.484548e-01 4 48531301 48531353 53 - 0.812 0.618 -0.802
ENSG00000075539 E028 8.3058702 0.0020292305 9.458342e-01 9.854120e-01 4 48534545 48534685 141 - 0.965 0.973 0.029
ENSG00000075539 E029 11.4876978 0.0012732526 9.749515e-01 9.954114e-01 4 48535657 48535827 171 - 1.094 1.098 0.014
ENSG00000075539 E030 9.2295539 0.0018094578 2.120263e-01 4.971276e-01 4 48539971 48540068 98 - 1.061 0.948 -0.418
ENSG00000075539 E031 26.9177041 0.0005472945 1.691846e-01 4.408329e-01 4 48540353 48540960 608 - 1.481 1.405 -0.262
ENSG00000075539 E032 4.0269478 0.0039784287 8.926152e-01 9.643740e-01 4 48542027 48542121 95 - 0.709 0.693 -0.065
ENSG00000075539 E033 6.0381250 0.0024971358 8.179391e-02 2.942397e-01 4 48543807 48543997 191 - 0.746 0.935 0.734
ENSG00000075539 E034 3.3296452 0.0044276986 1.944371e-01 4.743427e-01 4 48544783 48544904 122 - 0.546 0.716 0.739
ENSG00000075539 E035 5.8473628 0.0341789039 5.758855e-01 8.102355e-01 4 48546067 48546268 202 - 0.869 0.795 -0.287
ENSG00000075539 E036 1.6954771 0.0098475030 4.144123e-01 6.946262e-01 4 48546269 48546271 3 - 0.485 0.364 -0.649
ENSG00000075539 E037 0.1272623 0.0123292938 4.706259e-01   4 48546272 48546759 488 - 0.000 0.101 12.564
ENSG00000075539 E038 0.0000000       4 48547470 48547583 114 -      
ENSG00000075539 E039 4.2377562 0.0033977797 1.422519e-01 4.012454e-01 4 48547584 48547769 186 - 0.796 0.618 -0.740
ENSG00000075539 E040 2.9132434 0.0246673605 3.926086e-01 6.775986e-01 4 48548690 48548793 104 - 0.646 0.526 -0.539
ENSG00000075539 E041 3.6536209 0.0045154324 7.192263e-01 8.868075e-01 4 48549473 48549623 151 - 0.689 0.644 -0.189
ENSG00000075539 E042 0.0000000       4 48550502 48550591 90 -      
ENSG00000075539 E043 4.7447944 0.0032578108 4.847870e-01 7.488015e-01 4 48550592 48550704 113 - 0.796 0.716 -0.325
ENSG00000075539 E044 3.5020974 0.0604693605 1.374756e-01 3.946459e-01 4 48551494 48551578 85 - 0.746 0.526 -0.954
ENSG00000075539 E045 6.0346854 0.0023031327 1.728987e-02 1.150965e-01 4 48553215 48553383 169 - 0.954 0.693 -1.024
ENSG00000075539 E046 7.5296583 0.0037204648 2.173872e-01 5.037839e-01 4 48556978 48557118 141 - 0.986 0.863 -0.465
ENSG00000075539 E047 8.4354183 0.0016418055 8.459457e-01 9.452521e-01 4 48557453 48557712 260 - 0.965 0.985 0.073
ENSG00000075539 E048 6.1043320 0.0243774061 9.275463e-01 9.784518e-01 4 48561468 48561636 169 - 0.855 0.847 -0.033
ENSG00000075539 E049 5.2089357 0.0027766739 1.218906e-01 3.693951e-01 4 48562889 48562988 100 - 0.869 0.693 -0.702
ENSG00000075539 E050 6.0626898 0.0026558328 1.323163e-01 3.860198e-01 4 48563948 48564102 155 - 0.920 0.757 -0.632
ENSG00000075539 E051 1.9412150 0.0073468664 4.659875e-01 7.348704e-01 4 48564933 48564987 55 - 0.517 0.410 -0.539
ENSG00000075539 E052 2.1573484 0.0064661589 3.355904e-02 1.742813e-01 4 48564988 48565043 56 - 0.623 0.311 -1.609
ENSG00000075539 E053 4.7338701 0.0030087121 3.077000e-01 6.008968e-01 4 48565531 48565691 161 - 0.812 0.693 -0.480
ENSG00000075539 E054 5.1411152 0.0029909090 6.659429e-01 8.610579e-01 4 48567248 48567420 173 - 0.763 0.813 0.198
ENSG00000075539 E055 2.2405860 0.0065023582 2.974712e-02 1.621733e-01 4 48570827 48570918 92 - 0.331 0.644 1.577
ENSG00000075539 E056 0.1265070 0.0122704875 4.706434e-01   4 48571690 48571897 208 - 0.000 0.101 12.564
ENSG00000075539 E057 1.7153597 0.0921930987 8.215179e-01 9.352756e-01 4 48573186 48573243 58 - 0.415 0.453 0.199
ENSG00000075539 E058 2.7770708 0.0222282869 1.339028e-01 3.888184e-01 4 48575117 48575221 105 - 0.668 0.453 -0.994
ENSG00000075539 E059 1.8119119 0.0112209840 3.050192e-01 5.982801e-01 4 48575222 48575241 20 - 0.517 0.364 -0.801
ENSG00000075539 E060 3.8662918 0.0135076768 1.812747e-01 4.571054e-01 4 48576030 48576222 193 - 0.763 0.589 -0.734
ENSG00000075539 E061 3.8266085 0.0038659532 1.075771e-03 1.583533e-02 4 48578973 48579241 269 - 0.841 0.410 -1.917
ENSG00000075539 E062 0.2533610 0.0159947674 1.998916e-01   4 48580456 48580864 409 - 0.000 0.183 13.489
ENSG00000075539 E063 1.9693851 0.0069779580 4.479188e-01 7.221058e-01 4 48580865 48580951 87 - 0.415 0.526 0.561
ENSG00000075539 E064 3.6641642 0.0053447856 9.985393e-01 1.000000e+00 4 48581420 48581605 186 - 0.668 0.669 0.006
ENSG00000075539 E065 5.3737629 0.0146170981 8.872560e-01 9.622979e-01 4 48582497 48582734 238 - 0.812 0.795 -0.065
ENSG00000075539 E066 2.1784317 0.0223530540 2.761085e-01 5.695352e-01 4 48586621 48586728 108 - 0.573 0.410 -0.802
ENSG00000075539 E067 2.0618347 0.0069367968 3.494286e-01 6.398479e-01 4 48589745 48589877 133 - 0.546 0.410 -0.676
ENSG00000075539 E068 2.0678810 0.0066286123 6.542352e-01 8.548678e-01 4 48590659 48590830 172 - 0.517 0.453 -0.316
ENSG00000075539 E069 1.0704588 0.0105867068 2.308433e-02 1.386168e-01 4 48593930 48594016 87 - 0.451 0.101 -2.802
ENSG00000075539 E070 1.3139725 0.0102389927 5.008932e-02 2.210373e-01 4 48595590 48595698 109 - 0.485 0.183 -1.971
ENSG00000075539 E071 2.5224548 0.0056074296 3.255739e-02 1.709786e-01 4 48595897 48596000 104 - 0.668 0.364 -1.480
ENSG00000075539 E072 2.5198961 0.0787197083 6.977683e-02 2.671501e-01 4 48602020 48602121 102 - 0.668 0.364 -1.480
ENSG00000075539 E073 1.5853316 0.0171749523 9.707013e-01 9.941852e-01 4 48603290 48603388 99 - 0.415 0.410 -0.024
ENSG00000075539 E074 1.8509965 0.0075959495 3.066792e-01 5.998780e-01 4 48605741 48605833 93 - 0.375 0.526 0.783
ENSG00000075539 E075 0.0000000       4 48605834 48605846 13 -      
ENSG00000075539 E076 2.9671568 0.0047837287 1.236771e-01 3.723986e-01 4 48606438 48606606 169 - 0.485 0.693 0.935
ENSG00000075539 E077 1.3264680 0.0266910791 2.018212e-01 4.842092e-01 4 48608987 48609067 81 - 0.451 0.252 -1.217
ENSG00000075539 E078 1.0901342 0.0423455496 4.366118e-01 7.130256e-01 4 48609744 48609823 80 - 0.375 0.252 -0.802
ENSG00000075539 E079 0.5077596 0.0150383840 3.262532e-02 1.711853e-01 4 48617604 48619273 1670 - 0.000 0.311 14.391
ENSG00000075539 E080 1.5979170 0.0474171914 6.226620e-01 8.374726e-01 4 48619274 48619370 97 - 0.375 0.453 0.421
ENSG00000075539 E081 0.9984270 0.0115699479 1.060209e-01 3.409739e-01 4 48620639 48620656 18 - 0.163 0.410 1.783
ENSG00000075539 E082 1.5958374 0.0084506921 6.072364e-01 8.290264e-01 4 48620657 48620778 122 - 0.375 0.453 0.421
ENSG00000075539 E083 0.6154762 0.1968937385 5.798927e-01 8.124558e-01 4 48623126 48623179 54 - 0.163 0.252 0.784
ENSG00000075539 E084 1.3492738 0.2909723389 4.640261e-01 7.336436e-01 4 48634291 48634417 127 - 0.331 0.410 0.462
ENSG00000075539 E085 1.3424779 0.1289807798 9.922722e-01 1.000000e+00 4 48634418 48634490 73 - 0.375 0.364 -0.065
ENSG00000075539 E086 0.0000000       4 48636850 48638188 1339 -      
ENSG00000075539 E087 0.0000000       4 48638189 48638563 375 -      
ENSG00000075539 E088 0.0000000       4 48645969 48646017 49 -      
ENSG00000075539 E089 0.0000000       4 48653714 48653917 204 -      
ENSG00000075539 E090 0.0000000       4 48680930 48681171 242 -      
ENSG00000075539 E091 1.7074650 0.0086674886 7.778156e-01 9.147958e-01 4 48684673 48684795 123 - 0.451 0.410 -0.217
ENSG00000075539 E092 2.6517637 0.0053922812 6.546365e-02 2.576880e-01 4 48710519 48710698 180 - 0.668 0.410 -1.217
ENSG00000075539 E093 0.0000000       4 48727431 48727491 61 -      
ENSG00000075539 E094 1.9328122 0.0070016021 2.155220e-01 5.013025e-01 4 48780078 48780322 245 - 0.546 0.364 -0.939

Help

Please Click HERE to learn more details about the results from DEXseq.