ENSG00000075651

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000351298 ENSG00000075651 No_inf pgKDN_inf PLD1 protein_coding protein_coding 1.514635 2.227691 1.474406 0.2434533 0.7456521 -0.5921251 0.66632133 1.8643845 0.0000000 0.09302847 0.00000000 -7.5502731 0.33650833 0.857425 0.000000 -0.857425 0.0002650776 0.0002650776 FALSE TRUE
ENST00000356327 ENSG00000075651 No_inf pgKDN_inf PLD1 protein_coding protein_coding 1.514635 2.227691 1.474406 0.2434533 0.7456521 -0.5921251 0.30779522 0.0000000 0.5564736 0.00000000 0.04007481 5.8239367 0.36975833 0.000000 0.656600 0.656600 0.0221333158 0.0002650776 FALSE TRUE
ENST00000418087 ENSG00000075651 No_inf pgKDN_inf PLD1 protein_coding protein_coding 1.514635 2.227691 1.474406 0.2434533 0.7456521 -0.5921251 0.07601923 0.0000000 0.2280577 0.00000000 0.22805769 4.5732393 0.02055833 0.000000 0.061675 0.061675 0.6036942892 0.0002650776 FALSE FALSE
ENST00000460926 ENSG00000075651 No_inf pgKDN_inf PLD1 protein_coding protein_coding_CDS_not_defined 1.514635 2.227691 1.474406 0.2434533 0.7456521 -0.5921251 0.08616225 0.0419085 0.0000000 0.04190850 0.00000000 -2.3759709 0.10095833 0.016200 0.000000 -0.016200 1.0000000000 0.0002650776 FALSE FALSE
ENST00000463281 ENSG00000075651 No_inf pgKDN_inf PLD1 protein_coding protein_coding_CDS_not_defined 1.514635 2.227691 1.474406 0.2434533 0.7456521 -0.5921251 0.08950157 0.0000000 0.2685047 0.00000000 0.26850470 4.7996298 0.02420000 0.000000 0.072600 0.072600 0.6116025740 0.0002650776   FALSE
ENST00000467432 ENSG00000075651 No_inf pgKDN_inf PLD1 protein_coding retained_intron 1.514635 2.227691 1.474406 0.2434533 0.7456521 -0.5921251 0.10491296 0.0000000 0.3147389 0.00000000 0.31473888 5.0212082 0.02836667 0.000000 0.085100 0.085100 0.6229743490 0.0002650776 FALSE FALSE
ENST00000471075 ENSG00000075651 No_inf pgKDN_inf PLD1 protein_coding retained_intron 1.514635 2.227691 1.474406 0.2434533 0.7456521 -0.5921251 0.10763478 0.2162733 0.1066311 0.12134124 0.07025714 -0.9561139 0.07027500 0.086800 0.124025 0.037225 0.9975080843 0.0002650776 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000075651 E001 0.0000000       3 171600404 171600404 1 -      
ENSG00000075651 E002 0.0000000       3 171600405 171600658 254 -      
ENSG00000075651 E003 0.4822993 0.024049080 0.022141521   3 171600659 171601046 388 - 0.347 0.059 -3.060
ENSG00000075651 E004 1.2597532 0.057507510 0.380483107 0.66700977 3 171601047 171601206 160 - 0.149 0.366 1.695
ENSG00000075651 E005 10.2383871 0.003880660 0.649974679 0.85260498 3 171601207 171602058 852 - 0.942 1.011 0.254
ENSG00000075651 E006 13.1951452 0.002044025 0.093005694 0.31683736 3 171602059 171603302 1244 - 1.108 1.090 -0.066
ENSG00000075651 E007 1.6433663 0.067209763 0.212350481 0.49759926 3 171605299 171605416 118 - 0.149 0.441 2.110
ENSG00000075651 E008 0.1272623 0.012567495 1.000000000   3 171611466 171611634 169 - 0.000 0.059 12.388
ENSG00000075651 E009 0.8893592 0.016535731 0.173881277 0.44736501 3 171612279 171612306 28 - 0.000 0.307 14.612
ENSG00000075651 E010 1.2327157 0.012084996 0.181691680 0.45772148 3 171612307 171612432 126 - 0.420 0.274 -0.890
ENSG00000075651 E011 1.7493169 0.008819319 0.991661706 1.00000000 3 171620386 171620520 135 - 0.347 0.417 0.399
ENSG00000075651 E012 0.6348960 0.014805699 0.338236993 0.63004092 3 171642840 171642889 50 - 0.000 0.239 14.252
ENSG00000075651 E013 0.0000000       3 171642890 171643154 265 -      
ENSG00000075651 E014 1.1342225 0.010752296 0.439829951 0.71565879 3 171644910 171645023 114 - 0.149 0.337 1.525
ENSG00000075651 E015 0.6097487 0.017179618 0.060446162 0.24669719 3 171653242 171654293 1052 - 0.347 0.112 -2.060
ENSG00000075651 E016 1.0141347 0.018922940 0.127901543 0.37905949 3 171659213 171659301 89 - 0.000 0.337 14.752
ENSG00000075651 E017 1.3687274 0.011147448 0.635880073 0.84469732 3 171662060 171662170 111 - 0.347 0.337 -0.060
ENSG00000075651 E018 0.0000000       3 171666258 171666305 48 -      
ENSG00000075651 E019 0.9974535 0.012764789 0.797766035 0.92380567 3 171674500 171674551 52 - 0.259 0.274 0.110
ENSG00000075651 E020 0.8886653 0.012388081 0.173080583 0.44613497 3 171674552 171674613 62 - 0.000 0.307 14.613
ENSG00000075651 E021 1.7766399 0.007876299 0.021939419 0.13445420 3 171676715 171676833 119 - 0.000 0.485 15.334
ENSG00000075651 E022 1.3963301 0.011695643 0.052618632 0.22795211 3 171677566 171677694 129 - 0.000 0.417 15.085
ENSG00000075651 E023 0.0000000       3 171677695 171677853 159 -      
ENSG00000075651 E024 1.0158016 0.012099348 0.126435392 0.37689689 3 171686685 171686798 114 - 0.000 0.337 14.754
ENSG00000075651 E025 1.3791155 0.068789092 0.808731844 0.92941069 3 171687371 171687584 214 - 0.259 0.366 0.694
ENSG00000075651 E026 1.0155193 0.011314278 0.126272100 0.37676544 3 171688676 171688694 19 - 0.000 0.337 14.754
ENSG00000075651 E027 1.7791236 0.032167216 0.025393777 0.14676253 3 171688695 171688876 182 - 0.000 0.485 15.327
ENSG00000075651 E028 0.8800713 0.019444373 0.673553271 0.86483822 3 171692332 171692442 111 - 0.149 0.274 1.110
ENSG00000075651 E029 0.5988299 0.014791653 0.005158521 0.05075149 3 171699745 171699826 82 - 0.420 0.059 -3.475
ENSG00000075651 E030 0.6252366 0.019133858 1.000000000 1.00000000 3 171708755 171708838 84 - 0.149 0.201 0.525
ENSG00000075651 E031 0.0000000       3 171708839 171708870 32 -      
ENSG00000075651 E032 0.8710084 0.013478483 0.647768973 0.85124413 3 171709560 171709709 150 - 0.259 0.239 -0.153
ENSG00000075651 E033 0.2537694 0.016285695 1.000000000   3 171713878 171713892 15 - 0.000 0.112 13.221
ENSG00000075651 E034 0.9969502 0.103530461 0.773606862 0.91293159 3 171713893 171714045 153 - 0.259 0.274 0.110
ENSG00000075651 E035 0.0000000       3 171721354 171721545 192 -      
ENSG00000075651 E036 1.2601940 0.010776025 0.357304383 0.64695520 3 171724696 171724788 93 - 0.149 0.366 1.695
ENSG00000075651 E037 0.0000000       3 171726004 171726017 14 -      
ENSG00000075651 E038 1.2702003 0.011093224 0.069448887 0.26636806 3 171726018 171726076 59 - 0.000 0.392 14.986
ENSG00000075651 E039 0.7523083 0.014810226 0.844008579 0.94419488 3 171733444 171733509 66 - 0.149 0.239 0.847
ENSG00000075651 E040 0.4980357 0.017548509 0.840378582   3 171734865 171734970 106 - 0.149 0.158 0.110
ENSG00000075651 E041 0.6173655 0.016151794 0.338256951 0.63004092 3 171735492 171735500 9 - 0.259 0.158 -0.890
ENSG00000075651 E042 1.8363311 0.011453940 0.006147162 0.05749931 3 171735501 171735623 123 - 0.630 0.307 -1.668
ENSG00000075651 E043 0.1272623 0.012567495 1.000000000   3 171735624 171735637 14 - 0.000 0.059 12.388
ENSG00000075651 E044 0.7242945 0.017546207 0.017408605 0.11565850 3 171737532 171737659 128 - 0.420 0.112 -2.475
ENSG00000075651 E045 0.1271363 0.012739267 1.000000000   3 171737892 171738082 191 - 0.000 0.059 12.388
ENSG00000075651 E046 0.0000000       3 171765129 171765495 367 -      
ENSG00000075651 E047 0.0000000       3 171771195 171771385 191 -      
ENSG00000075651 E048 0.0000000       3 171788567 171788580 14 -      
ENSG00000075651 E049 0.2533610 0.016864412 1.000000000   3 171788581 171789535 955 - 0.000 0.112 13.221
ENSG00000075651 E050 0.0000000       3 171789646 171789701 56 -      
ENSG00000075651 E051 0.0000000       3 171789841 171789957 117 -      
ENSG00000075651 E052 0.1272623 0.012567495 1.000000000   3 171810399 171810714 316 - 0.000 0.059 12.388
ENSG00000075651 E053 0.0000000       3 171810889 171810950 62 -      

Help

Please Click HERE to learn more details about the results from DEXseq.