ENSG00000076201

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000265562 ENSG00000076201 No_inf pgKDN_inf PTPN23 protein_coding protein_coding 25.40105 27.01259 23.12927 2.933462 1.231761 -0.2238229 6.3329614 3.752832 9.36004234 2.1779618 0.48621618 1.31623650 0.26344167 0.152450 0.405925 0.253475 0.36419108 0.04507263 FALSE  
ENST00000462998 ENSG00000076201 No_inf pgKDN_inf PTPN23 protein_coding retained_intron 25.40105 27.01259 23.12927 2.933462 1.231761 -0.2238229 1.4488375 4.346513 0.00000000 2.5416462 0.00000000 -8.76702989 0.04579167 0.137375 0.000000 -0.137375 0.48033560 0.04507263    
ENST00000602307 ENSG00000076201 No_inf pgKDN_inf PTPN23 protein_coding nonsense_mediated_decay 25.40105 27.01259 23.12927 2.933462 1.231761 -0.2238229 2.0447058 2.303994 0.35709696 1.3541908 0.35709696 -2.65615231 0.07572500 0.081325 0.015625 -0.065700 0.81042562 0.04507263 FALSE  
ENST00000683708 ENSG00000076201 No_inf pgKDN_inf PTPN23 protein_coding protein_coding_CDS_not_defined 25.40105 27.01259 23.12927 2.933462 1.231761 -0.2238229 11.4640432 10.803616 11.26278475 1.0549294 0.84791086 0.05999496 0.45429167 0.404875 0.485400 0.080525 0.74976778 0.04507263 FALSE  
MSTRG.20084.4 ENSG00000076201 No_inf pgKDN_inf PTPN23 protein_coding   25.40105 27.01259 23.12927 2.933462 1.231761 -0.2238229 0.8636559 1.589538 0.06455202 0.4753991 0.06455202 -4.42326390 0.03258333 0.057950 0.002950 -0.055000 0.04507263 0.04507263 FALSE  
MSTRG.20084.6 ENSG00000076201 No_inf pgKDN_inf PTPN23 protein_coding   25.40105 27.01259 23.12927 2.933462 1.231761 -0.2238229 0.5691184 1.456180 0.25117552 1.4561796 0.25117552 -2.48897025 0.02507500 0.063725 0.011500 -0.052225 1.00000000 0.04507263 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000076201 E001 0.0000000       3 47381011 47381013 3 +      
ENSG00000076201 E002 0.0000000       3 47381014 47381020 7 +      
ENSG00000076201 E003 0.0000000       3 47381021 47381035 15 +      
ENSG00000076201 E004 0.0000000       3 47381036 47381069 34 +      
ENSG00000076201 E005 0.0000000       3 47381070 47381079 10 +      
ENSG00000076201 E006 0.0000000       3 47381080 47381109 30 +      
ENSG00000076201 E007 0.0000000       3 47381110 47381180 71 +      
ENSG00000076201 E008 2.9588170 0.0048005883 0.4924711883 0.75462089 3 47396143 47396217 75 + 0.545 0.638 0.417
ENSG00000076201 E009 0.0000000       3 47396218 47396291 74 +      
ENSG00000076201 E010 7.0641138 0.0022358192 0.1347749573 0.39027933 3 47404652 47404779 128 + 0.979 0.828 -0.571
ENSG00000076201 E011 3.4061111 0.0123500349 0.2203249457 0.50721383 3 47405005 47405009 5 + 0.721 0.560 -0.697
ENSG00000076201 E012 5.7409551 0.0047498450 0.3757845101 0.66312922 3 47405010 47405081 72 + 0.876 0.780 -0.377
ENSG00000076201 E013 0.7440934 0.0132509708 0.4493612537 0.72315599 3 47405082 47405279 198 + 0.176 0.291 0.931
ENSG00000076201 E014 0.4901032 0.0158014675 0.9606758574   3 47405280 47405632 353 + 0.176 0.170 -0.069
ENSG00000076201 E015 0.2537694 0.0161324736 0.2596623534   3 47405633 47405748 116 + 0.000 0.170 11.105
ENSG00000076201 E016 3.5390204 0.0048824764 0.4933839199 0.75534839 3 47405749 47405798 50 + 0.700 0.614 -0.368
ENSG00000076201 E017 3.7990205 0.0116018431 0.9686895877 0.99364123 3 47405915 47405944 30 + 0.678 0.683 0.025
ENSG00000076201 E018 9.5396288 0.0048257456 0.6672376864 0.86152588 3 47405945 47406046 102 + 1.042 1.004 -0.143
ENSG00000076201 E019 8.8948214 0.0095330994 0.2401869042 0.52942295 3 47406325 47406405 81 + 1.052 0.937 -0.426
ENSG00000076201 E020 11.3123298 0.0032928147 0.0502341746 0.22147715 3 47406481 47406612 132 + 1.170 1.004 -0.602
ENSG00000076201 E021 6.9375217 0.0023360467 0.1700883272 0.44218374 3 47406703 47406750 48 + 0.967 0.828 -0.528
ENSG00000076201 E022 1.9952554 0.0837616147 0.1005175911 0.33107272 3 47406751 47406891 141 + 0.302 0.587 1.516
ENSG00000076201 E023 2.3769476 0.0150365881 0.0153201356 0.10667134 3 47406892 47407129 238 + 0.302 0.661 1.838
ENSG00000076201 E024 8.3280193 0.0017420919 0.8356879032 0.94097980 3 47407130 47407186 57 + 0.979 0.960 -0.069
ENSG00000076201 E025 8.2741005 0.0017042891 0.0978110241 0.32598034 3 47407309 47407367 59 + 1.042 0.886 -0.583
ENSG00000076201 E026 8.9591944 0.0015731860 0.8932793012 0.96458498 3 47407505 47407584 80 + 0.990 1.004 0.050
ENSG00000076201 E027 11.9118088 0.0014197950 0.7978241151 0.92380567 3 47407697 47407811 115 + 1.098 1.120 0.080
ENSG00000076201 E028 8.5306760 0.0019305787 0.1622788084 0.43068077 3 47407890 47407955 66 + 1.042 0.912 -0.484
ENSG00000076201 E029 3.2617417 0.0259205405 0.0008325575 0.01300787 3 47407956 47408260 305 + 0.302 0.796 2.391
ENSG00000076201 E030 0.9965382 0.0823041898 0.2007757288 0.48286088 3 47408261 47408332 72 + 0.176 0.386 1.516
ENSG00000076201 E031 12.9617730 0.0051160707 0.5343190960 0.78441848 3 47408345 47408490 146 + 1.170 1.120 -0.177
ENSG00000076201 E032 4.2634297 0.0034498774 0.3246418160 0.61706543 3 47408776 47408784 9 + 0.779 0.661 -0.484
ENSG00000076201 E033 22.3052550 0.0017940618 0.9161242691 0.97370534 3 47408785 47409087 303 + 1.363 1.370 0.027
ENSG00000076201 E034 11.2512848 0.0156556899 0.6980221368 0.87679917 3 47409163 47409297 135 + 1.106 1.070 -0.131
ENSG00000076201 E035 5.0220760 0.0030386760 0.9945839538 1.00000000 3 47409298 47409317 20 + 0.779 0.780 0.002
ENSG00000076201 E036 0.0000000       3 47409318 47409416 99 +      
ENSG00000076201 E037 3.6544206 0.0170064259 0.4091498665 0.69133224 3 47409417 47409419 3 + 0.721 0.614 -0.456
ENSG00000076201 E038 9.6706662 0.0014595550 0.7360020116 0.89521916 3 47409420 47409568 149 + 1.042 1.014 -0.105
ENSG00000076201 E039 0.1271363 0.0122907199 0.5653541280   3 47409569 47409654 86 + 0.000 0.093 10.164
ENSG00000076201 E040 11.8013793 0.0013244095 0.0297201038 0.16210053 3 47409655 47409834 180 + 1.191 1.014 -0.641
ENSG00000076201 E041 18.8989982 0.0009623493 0.7422034236 0.89801595 3 47409928 47410163 236 + 1.286 1.309 0.081
ENSG00000076201 E042 21.6642917 0.0009929763 0.1862385349 0.46409142 3 47410164 47410406 243 + 1.308 1.392 0.294
ENSG00000076201 E043 34.6987468 0.0007617515 0.0826504754 0.29619075 3 47410407 47411038 632 + 1.503 1.591 0.302
ENSG00000076201 E044 53.1371586 0.0003136047 0.6169412122 0.83408386 3 47411039 47411686 648 + 1.721 1.742 0.071
ENSG00000076201 E045 29.5032952 0.0004963457 0.6438293806 0.84910854 3 47411783 47411967 185 + 1.496 1.472 -0.081
ENSG00000076201 E046 19.4563817 0.0055673495 0.1011971888 0.33225156 3 47412094 47412198 105 + 1.244 1.362 0.411
ENSG00000076201 E047 25.3638644 0.0006081210 0.9886395306 1.00000000 3 47412283 47412421 139 + 1.420 1.421 0.001
ENSG00000076201 E048 28.9522689 0.0006034577 0.5952922266 0.82207184 3 47412514 47412627 114 + 1.460 1.490 0.103
ENSG00000076201 E049 2.1143935 0.0086230036 0.1103167762 0.34845480 3 47412628 47412705 78 + 0.353 0.588 1.194
ENSG00000076201 E050 109.1251281 0.0001652438 0.8960206508 0.96578556 3 47412706 47413461 756 + 2.039 2.043 0.016

Help

Please Click HERE to learn more details about the results from DEXseq.