ENSG00000079805

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000355667 ENSG00000079805 No_inf pgKDN_inf DNM2 protein_coding protein_coding 85.38513 92.71862 77.86621 3.217368 1.379971 -0.2518321 33.497813 30.494122 39.396252 2.5906860 2.0916701 0.3694203 0.39905833 0.332950 0.505425 0.172475 0.076945648 0.002497239 FALSE  
ENST00000591701 ENSG00000079805 No_inf pgKDN_inf DNM2 protein_coding retained_intron 85.38513 92.71862 77.86621 3.217368 1.379971 -0.2518321 7.012374 12.115535 3.203938 0.3095016 0.1657290 -1.9156344 0.07970000 0.131225 0.041100 -0.090125 0.002497239 0.002497239 FALSE  
ENST00000593220 ENSG00000079805 No_inf pgKDN_inf DNM2 protein_coding retained_intron 85.38513 92.71862 77.86621 3.217368 1.379971 -0.2518321 6.878861 12.785209 4.225413 2.6543521 0.1878995 -1.5950292 0.07729167 0.135475 0.054275 -0.081200 0.113150131 0.002497239 FALSE  
MSTRG.14516.1 ENSG00000079805 No_inf pgKDN_inf DNM2 protein_coding   85.38513 92.71862 77.86621 3.217368 1.379971 -0.2518321 7.183517 2.711215 12.530690 1.8995151 1.3896403 2.2042938 0.08855000 0.030700 0.161850 0.131150 0.090203424 0.002497239 FALSE  
MSTRG.14516.10 ENSG00000079805 No_inf pgKDN_inf DNM2 protein_coding   85.38513 92.71862 77.86621 3.217368 1.379971 -0.2518321 9.159881 6.900795 8.780036 1.3371935 0.8128414 0.3470173 0.10815000 0.073800 0.112375 0.038575 0.604877949 0.002497239 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000079805 E001 0.2537694 0.0160236433 2.855391e-01   19 10718033 10718054 22 + 0.000 0.166 11.010
ENSG00000079805 E002 1.3334140 0.0126534676 2.766157e-01 5.701090e-01 19 10718055 10718078 24 + 0.448 0.285 -0.961
ENSG00000079805 E003 1.9404561 0.0428070054 2.479947e-01 5.387854e-01 19 10718079 10718092 14 + 0.554 0.379 -0.891
ENSG00000079805 E004 17.4287503 0.0008508628 2.301234e-02 1.384016e-01 19 10718093 10718207 115 + 1.341 1.187 -0.539
ENSG00000079805 E005 42.7855585 0.0004337118 2.145532e-04 4.426537e-03 19 10718208 10718403 196 + 1.721 1.557 -0.559
ENSG00000079805 E006 0.0000000       19 10718561 10718646 86 +      
ENSG00000079805 E007 0.1268540 0.0123248562 6.049178e-01   19 10755121 10755488 368 + 0.000 0.091 12.490
ENSG00000079805 E008 0.1271363 0.0123324274 6.049118e-01   19 10759634 10759737 104 + 0.000 0.091 12.489
ENSG00000079805 E009 30.4142207 0.0031004854 3.738834e-04 6.928348e-03 19 10759738 10759811 74 + 1.593 1.392 -0.691
ENSG00000079805 E010 0.0000000       19 10763099 10763616 518 +      
ENSG00000079805 E011 0.0000000       19 10768553 10768862 310 +      
ENSG00000079805 E012 0.0000000       19 10769289 10769446 158 +      
ENSG00000079805 E013 48.9494524 0.0029111704 7.501030e-07 3.608926e-05 19 10772479 10772628 150 + 1.808 1.576 -0.787
ENSG00000079805 E014 65.7032298 0.0012014879 1.833772e-05 5.733248e-04 19 10775703 10775906 204 + 1.903 1.741 -0.547
ENSG00000079805 E015 22.0290886 0.0035316217 2.365930e-03 2.892204e-02 19 10777118 10777168 51 + 1.457 1.259 -0.686
ENSG00000079805 E016 24.9103387 0.0005741684 7.221254e-05 1.803942e-03 19 10777169 10777216 48 + 1.522 1.291 -0.798
ENSG00000079805 E017 0.1272623 0.0123455613 6.049267e-01   19 10781374 10781567 194 + 0.000 0.091 12.489
ENSG00000079805 E018 0.2536433 0.0159927625 2.855157e-01   19 10781568 10781795 228 + 0.000 0.166 13.429
ENSG00000079805 E019 31.1718954 0.0004477086 9.498214e-04 1.441814e-02 19 10782960 10783015 56 + 1.590 1.420 -0.585
ENSG00000079805 E020 39.4579535 0.0004961449 2.139717e-04 4.416513e-03 19 10783016 10783120 105 + 1.690 1.519 -0.584
ENSG00000079805 E021 0.1187032 0.0118116253 4.780598e-01   19 10786430 10786563 134 + 0.100 0.000 -13.512
ENSG00000079805 E022 54.5226479 0.0002860841 3.612003e-01 6.507759e-01 19 10786564 10786706 143 + 1.760 1.728 -0.108
ENSG00000079805 E023 0.2539903 0.0160062431 2.855397e-01   19 10786707 10786741 35 + 0.000 0.166 13.428
ENSG00000079805 E024 67.7776773 0.0028597667 6.234892e-01 8.378579e-01 19 10793720 10793855 136 + 1.845 1.828 -0.054
ENSG00000079805 E025 1.2175539 0.0867244996 4.711876e-01 7.386409e-01 19 10793856 10794734 879 + 0.406 0.285 -0.739
ENSG00000079805 E026 52.7447067 0.0002747884 1.424856e-01 4.016727e-01 19 10795372 10795439 68 + 1.758 1.703 -0.187
ENSG00000079805 E027 19.5573360 0.0006802430 3.655257e-14 5.714279e-12 19 10795440 10795715 276 + 0.915 1.487 2.039
ENSG00000079805 E028 21.8877037 0.0020966056 6.065380e-12 7.158210e-10 19 10795716 10796060 345 + 1.023 1.519 1.745
ENSG00000079805 E029 53.0887440 0.0002735478 5.457499e-01 7.916111e-01 19 10796061 10796199 139 + 1.715 1.745 0.101
ENSG00000079805 E030 23.2095868 0.0006131023 9.462330e-02 3.200635e-01 19 10797380 10797518 139 + 1.433 1.336 -0.336
ENSG00000079805 E031 2.3556465 0.0121159477 1.808170e-01 4.565670e-01 19 10798387 10798485 99 + 0.406 0.604 0.962
ENSG00000079805 E032 59.0813820 0.0002515699 4.001497e-01 6.836382e-01 19 10798486 10798572 87 + 1.792 1.764 -0.094
ENSG00000079805 E033 56.4541641 0.0019535582 8.856364e-03 7.413614e-02 19 10802288 10802358 71 + 1.813 1.705 -0.367
ENSG00000079805 E034 8.5815746 0.0015781634 2.429957e-03 2.947095e-02 19 10802359 10803638 1280 + 0.790 1.092 1.139
ENSG00000079805 E035 0.5077596 0.0150280402 5.901702e-02 2.437418e-01 19 10803639 10803668 30 + 0.000 0.285 14.402
ENSG00000079805 E036 10.8152983 0.0445373857 1.357799e-02 9.811299e-02 19 10803669 10804912 1244 + 0.872 1.187 1.157
ENSG00000079805 E037 11.5551951 0.0028068352 2.818929e-10 2.644076e-08 19 10804980 10805915 936 + 0.664 1.281 2.324
ENSG00000079805 E038 47.9565906 0.0003097013 6.839713e-01 8.692314e-01 19 10805916 10805967 52 + 1.695 1.682 -0.043
ENSG00000079805 E039 2.3766991 0.0481136882 3.244916e-02 1.706522e-01 19 10808519 10808568 50 + 0.308 0.651 1.753
ENSG00000079805 E040 23.4708265 0.0036047558 1.723638e-02 1.148676e-01 19 10808569 10808580 12 + 1.292 1.453 0.559
ENSG00000079805 E041 12.5533714 0.0022727946 1.373031e-10 1.351333e-08 19 10808581 10809207 627 + 0.710 1.312 2.239
ENSG00000079805 E042 62.7730390 0.0058324701 2.406820e-21 7.333867e-19 19 10809208 10812263 3056 + 1.457 1.967 1.731
ENSG00000079805 E043 66.6888825 0.0026735112 1.281966e-01 3.795504e-01 19 10812264 10812377 114 + 1.790 1.859 0.232
ENSG00000079805 E044 77.5894414 0.0002340168 1.755400e-01 4.496125e-01 19 10819980 10820089 110 + 1.865 1.916 0.172
ENSG00000079805 E045 1.2216098 0.0205008467 8.549464e-01 9.488770e-01 19 10823224 10823787 564 + 0.360 0.335 -0.154
ENSG00000079805 E046 74.1481710 0.0004519750 1.767209e-01 4.510398e-01 19 10823788 10823899 112 + 1.845 1.897 0.178
ENSG00000079805 E047 2.3851317 0.0057697389 4.411342e-03 4.541645e-02 19 10823900 10824806 907 + 0.249 0.673 2.261
ENSG00000079805 E048 126.3290405 0.0001326688 6.949561e-01 8.753851e-01 19 10825057 10825221 165 + 2.095 2.110 0.051
ENSG00000079805 E049 72.0783461 0.0002413423 6.670296e-01 8.615253e-01 19 10829036 10829111 76 + 1.851 1.871 0.068
ENSG00000079805 E050 101.1466227 0.0006686375 1.314411e-01 3.845898e-01 19 10829112 10829268 157 + 2.030 1.988 -0.140
ENSG00000079805 E051 99.3140593 0.0002599361 4.418162e-01 7.172201e-01 19 10830127 10830337 211 + 2.009 1.991 -0.061
ENSG00000079805 E052 36.9901798 0.0004677779 5.964871e-01 8.226533e-01 19 10830338 10830378 41 + 1.561 1.592 0.106
ENSG00000079805 E053 0.4996088 0.0152062394 3.793657e-01   19 10830379 10830534 156 + 0.100 0.229 1.431
ENSG00000079805 E054 19.5237529 0.0007663939 2.273776e-02 1.373332e-01 19 10830978 10830980 3 + 1.217 1.376 0.554
ENSG00000079805 E055 257.6744695 0.0014260927 8.167219e-01 9.332827e-01 19 10830981 10831994 1014 + 2.411 2.411 0.000
ENSG00000079805 E056 0.0000000       19 10832304 10832991 688 +      
ENSG00000079805 E057 4.6022639 0.0052298347 2.297802e-02 1.382681e-01 19 10832992 10833488 497 + 0.872 0.604 -1.097

Help

Please Click HERE to learn more details about the results from DEXseq.