ENSG00000082074

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000512982 ENSG00000082074 No_inf pgKDN_inf FYB1 protein_coding protein_coding 12.54506 21.66425 10.32982 1.673758 0.6280159 -1.067771 9.4460266 15.514321 8.8331131 1.2457348 0.5375260 -0.8119039 0.76052500 0.717025 0.861875 0.144850 0.428199801 0.003762188 FALSE TRUE
ENST00000647313 ENSG00000082074 No_inf pgKDN_inf FYB1 protein_coding retained_intron 12.54506 21.66425 10.32982 1.673758 0.6280159 -1.067771 1.0370366 3.111110 0.0000000 1.0536535 0.0000000 -8.2859153 0.04502500 0.135075 0.000000 -0.135075 0.003762188 0.003762188 FALSE TRUE
MSTRG.22812.4 ENSG00000082074 No_inf pgKDN_inf FYB1 protein_coding   12.54506 21.66425 10.32982 1.673758 0.6280159 -1.067771 0.7570187 1.601719 0.1180994 0.9033297 0.1180994 -3.6532638 0.06815833 0.083150 0.012275 -0.070875 0.631900450 0.003762188 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000082074 E001 0.0000000       5 39105252 39105255 4 -      
ENSG00000082074 E002 146.4088225 0.0001593800 0.963587100 0.99232618 5 39105256 39107057 1802 - 2.134 2.132 -0.007
ENSG00000082074 E003 12.3074981 0.0011624749 0.551126038 0.79504006 5 39107058 39107168 111 - 1.055 1.106 0.185
ENSG00000082074 E004 12.5395558 0.0069310342 0.634490777 0.84377293 5 39107169 39107283 115 - 1.068 1.111 0.156
ENSG00000082074 E005 6.5514232 0.0023107265 0.559705553 0.80063546 5 39107284 39107307 24 - 0.891 0.827 -0.247
ENSG00000082074 E006 21.3607928 0.0013263212 0.608419629 0.82949842 5 39107308 39107465 158 - 1.291 1.325 0.120
ENSG00000082074 E007 7.9715080 0.0019607710 0.340398093 0.63201677 5 39108231 39108262 32 - 0.849 0.949 0.380
ENSG00000082074 E008 6.2230718 0.0088936071 0.546984714 0.79257089 5 39110356 39110389 34 - 0.778 0.848 0.276
ENSG00000082074 E009 0.0000000       5 39110390 39110642 253 -      
ENSG00000082074 E010 19.3495632 0.0007466374 0.996790747 1.00000000 5 39118874 39119036 163 - 1.275 1.274 -0.003
ENSG00000082074 E011 15.6053590 0.0151374291 0.676203191 0.86583911 5 39119535 39119634 100 - 1.213 1.174 -0.138
ENSG00000082074 E012 10.8097100 0.0012340287 0.661620779 0.85875674 5 39122336 39122402 67 - 1.012 1.051 0.144
ENSG00000082074 E013 8.2901016 0.0019821022 0.515429785 0.77148848 5 39124253 39124278 26 - 0.981 0.915 -0.245
ENSG00000082074 E014 1.5039233 0.0086887576 0.229618159 0.51824738 5 39124279 39124317 39 - 0.234 0.428 1.235
ENSG00000082074 E015 0.6338583 0.0147297921 0.124706122 0.37436825 5 39125972 39125997 26 - 0.000 0.265 11.481
ENSG00000082074 E016 17.9594116 0.0008439581 0.531725999 0.78227814 5 39125998 39126135 138 - 1.275 1.229 -0.161
ENSG00000082074 E017 10.9398629 0.0013475444 0.609634089 0.83017463 5 39127741 39127807 67 - 1.012 1.057 0.167
ENSG00000082074 E018 7.2147073 0.0020051896 0.461266599 0.73208112 5 39130590 39130612 23 - 0.827 0.906 0.306
ENSG00000082074 E019 18.4340390 0.0022368759 0.366465117 0.65516208 5 39134208 39134349 142 - 1.299 1.234 -0.230
ENSG00000082074 E020 26.8372707 0.0098624918 0.198215932 0.47961319 5 39134855 39135014 160 - 1.470 1.380 -0.311
ENSG00000082074 E021 0.0000000       5 39137404 39137599 196 -      
ENSG00000082074 E022 17.2469925 0.0011572912 0.938425026 0.98223255 5 39137600 39137720 121 - 1.232 1.225 -0.024
ENSG00000082074 E023 3.8841459 0.0036639778 0.115271418 0.35793557 5 39137721 39138656 936 - 0.497 0.716 0.972
ENSG00000082074 E024 7.3684361 0.0042062796 0.165792073 0.43568627 5 39138657 39138691 35 - 0.778 0.932 0.598
ENSG00000082074 E025 0.2455571 0.0163112588 0.557928910   5 39138692 39139232 541 - 0.132 0.067 -1.087
ENSG00000082074 E026 4.9715641 0.0080693508 0.786096630 0.91758390 5 39139233 39139252 20 - 0.723 0.756 0.136
ENSG00000082074 E027 0.2374063 0.2025523719 0.098638081   5 39139253 39140030 778 - 0.234 0.000 -11.831
ENSG00000082074 E028 7.7855570 0.0018393376 0.314781598 0.60766053 5 39141095 39141141 47 - 0.981 0.878 -0.386
ENSG00000082074 E029 13.7476897 0.0036870127 0.636948997 0.84501420 5 39153448 39153604 157 - 1.163 1.123 -0.145
ENSG00000082074 E030 34.4256491 0.0004118030 0.365232544 0.65376031 5 39201826 39202437 612 - 1.481 1.528 0.163
ENSG00000082074 E031 14.4495167 0.0050882559 0.165155011 0.43468038 5 39202438 39202616 179 - 1.068 1.189 0.433
ENSG00000082074 E032 9.0700437 0.0017441377 0.724481959 0.88936406 5 39202617 39202773 157 - 0.947 0.981 0.126
ENSG00000082074 E033 8.1895312 0.0017472108 0.967481978 0.99341205 5 39202774 39202893 120 - 0.929 0.932 0.013
ENSG00000082074 E034 6.0474417 0.0022797313 0.324543184 0.61689970 5 39202894 39202955 62 - 0.891 0.781 -0.428
ENSG00000082074 E035 4.1632095 0.0033697040 0.031875663 0.16871266 5 39202956 39202987 32 - 0.849 0.586 -1.087
ENSG00000082074 E036 0.2537694 0.0160209085 0.636407304   5 39202988 39203027 40 - 0.000 0.126 10.218
ENSG00000082074 E037 0.3717172 0.1747895096 0.979555305   5 39208864 39208964 101 - 0.133 0.126 -0.088
ENSG00000082074 E038 0.0000000       5 39211058 39211091 34 -      
ENSG00000082074 E039 1.5143103 0.0127231705 0.052154428 0.22677337 5 39212678 39213017 340 - 0.132 0.454 2.373
ENSG00000082074 E040 3.2865320 0.0049245293 0.004172998 0.04376149 5 39219443 39219576 134 - 0.827 0.454 -1.627
ENSG00000082074 E041 0.0000000       5 39250671 39250806 136 -      
ENSG00000082074 E042 0.0000000       5 39269645 39269819 175 -      
ENSG00000082074 E043 0.1170040 0.0117187130 0.237681522   5 39270569 39270828 260 - 0.132 0.000 -11.966
ENSG00000082074 E044 0.0000000       5 39274403 39274528 126 -      

Help

Please Click HERE to learn more details about the results from DEXseq.