ENSG00000082153

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000409600 ENSG00000082153 No_inf pgKDN_inf BZW1 protein_coding protein_coding 174.8919 102.622 230.8799 3.570249 9.759049 1.169724 43.19980 35.475660 52.47276 0.3130914 1.500984 0.5646075 0.2662583 0.346700 0.228025 -0.118675 0.009057785 0.009057785 FALSE TRUE
ENST00000410110 ENSG00000082153 No_inf pgKDN_inf BZW1 protein_coding protein_coding 174.8919 102.622 230.8799 3.570249 9.759049 1.169724 18.57671 8.671888 27.00031 0.8842625 5.591881 1.6374296 0.1025833 0.084675 0.116375 0.031700 0.807369888 0.009057785 FALSE TRUE
ENST00000419090 ENSG00000082153 No_inf pgKDN_inf BZW1 protein_coding protein_coding 174.8919 102.622 230.8799 3.570249 9.759049 1.169724 17.04604 12.909688 19.35946 5.2275409 8.216267 0.5842126 0.1061917 0.127025 0.086650 -0.040375 0.953037425 0.009057785 FALSE FALSE
ENST00000460660 ENSG00000082153 No_inf pgKDN_inf BZW1 protein_coding retained_intron 174.8919 102.622 230.8799 3.570249 9.759049 1.169724 91.51241 39.659221 128.63945 5.3585501 12.130107 1.6973533 0.4922167 0.384100 0.553625 0.169525 0.060495840 0.009057785   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000082153 E001 0.1268540 0.0122384827 0.364199587   2 200810594 200810697 104 + 0.000 0.114 10.064
ENSG00000082153 E002 6.7719473 0.0021538008 0.306002173 0.59925887 2 200811546 200811727 182 + 0.922 0.828 -0.361
ENSG00000082153 E003 0.3637832 0.1576757805 0.869733583   2 200811728 200811909 182 + 0.145 0.114 -0.400
ENSG00000082153 E004 0.0000000       2 200811910 200811922 13 +      
ENSG00000082153 E005 0.0000000       2 200811923 200811946 24 +      
ENSG00000082153 E006 0.0000000       2 200811947 200811990 44 +      
ENSG00000082153 E007 0.0000000       2 200812185 200812309 125 +      
ENSG00000082153 E008 0.7363505 0.0143366295 0.646757974 0.85045457 2 200812356 200812493 138 + 0.203 0.280 0.600
ENSG00000082153 E009 0.1272623 0.0122649124 0.364198593   2 200812676 200812885 210 + 0.000 0.114 12.179
ENSG00000082153 E010 0.1170040 0.0116383885 0.791279106   2 200812989 200813050 62 + 0.079 0.000 -12.084
ENSG00000082153 E011 26.5180787 0.0005991406 0.070756500 0.26943058 2 200813208 200813281 74 + 1.469 1.378 -0.312
ENSG00000082153 E012 0.2537694 0.0159428774 0.137711066   2 200813282 200813404 123 + 0.000 0.205 13.117
ENSG00000082153 E013 104.7694289 0.0017654690 0.508098787 0.76643267 2 200815341 200815517 177 + 2.020 2.015 -0.018
ENSG00000082153 E014 1.0060136 0.0113436289 0.006410436 0.05925287 2 200815518 200815666 149 + 0.079 0.493 3.408
ENSG00000082153 E015 77.8863721 0.0062499709 0.820882538 0.93501450 2 200815667 200815761 95 + 1.879 1.906 0.090
ENSG00000082153 E016 0.1170040 0.0116383885 0.791279106   2 200815762 200815762 1 + 0.079 0.000 -12.084
ENSG00000082153 E017 62.5620282 0.0002365373 0.443688271 0.71843570 2 200816325 200816390 66 + 1.802 1.789 -0.043
ENSG00000082153 E018 70.5378904 0.0002238423 0.187095742 0.46495055 2 200817106 200817241 136 + 1.861 1.830 -0.104
ENSG00000082153 E019 35.9919572 0.0003948302 0.059489306 0.24466190 2 200817974 200818033 60 + 1.593 1.514 -0.270
ENSG00000082153 E020 42.1185224 0.0055020903 0.349387372 0.63981592 2 200818034 200818083 50 + 1.643 1.607 -0.121
ENSG00000082153 E021 37.2730012 0.0040558549 0.415486412 0.69560280 2 200818223 200818271 49 + 1.589 1.559 -0.099
ENSG00000082153 E022 15.6909923 0.0009571438 0.919418018 0.97483898 2 200818272 200818325 54 + 1.207 1.230 0.080
ENSG00000082153 E023 32.1460198 0.0004439526 0.175946974 0.45003908 2 200818326 200818393 68 + 1.537 1.480 -0.192
ENSG00000082153 E024 32.2630238 0.0004410803 0.160745054 0.42870868 2 200818755 200818901 147 + 1.539 1.480 -0.201
ENSG00000082153 E025 0.1170040 0.0116383885 0.791279106   2 200818902 200819124 223 + 0.079 0.000 -12.084
ENSG00000082153 E026 0.0000000       2 200819982 200820018 37 +      
ENSG00000082153 E027 0.0000000       2 200820019 200820120 102 +      
ENSG00000082153 E028 0.3510120 0.5613993945 0.447434340   2 200820121 200820195 75 + 0.203 0.000 -12.393
ENSG00000082153 E029 53.4807843 0.0002733730 0.632587894 0.84261790 2 200821183 200821305 123 + 1.731 1.728 -0.012
ENSG00000082153 E030 288.6522505 0.0038481486 0.001113311 0.01629010 2 200822147 200827338 5192 + 2.415 2.507 0.309

Help

Please Click HERE to learn more details about the results from DEXseq.