ENSG00000082258

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000264157 ENSG00000082258 No_inf pgKDN_inf CCNT2 protein_coding protein_coding 19.41945 17.8338 20.06766 1.112113 1.283882 0.1701682 2.251132 0.9189398 4.1358226 0.9189398 0.4431261 2.1580014 0.1116250 0.043900 0.208425 0.164525 0.08353707 0.03778512 FALSE TRUE
ENST00000295238 ENSG00000082258 No_inf pgKDN_inf CCNT2 protein_coding protein_coding 19.41945 17.8338 20.06766 1.112113 1.283882 0.1701682 2.423185 3.8195450 0.9025424 1.0874015 0.5245540 -2.0692095 0.1347500 0.227025 0.049100 -0.177925 0.35611689 0.03778512 FALSE TRUE
ENST00000446247 ENSG00000082258 No_inf pgKDN_inf CCNT2 protein_coding protein_coding 19.41945 17.8338 20.06766 1.112113 1.283882 0.1701682 5.159571 4.2937905 5.2013756 0.4258596 0.8692825 0.2760564 0.2632667 0.242275 0.253950 0.011675 0.98763185 0.03778512 FALSE TRUE
ENST00000475094 ENSG00000082258 No_inf pgKDN_inf CCNT2 protein_coding retained_intron 19.41945 17.8338 20.06766 1.112113 1.283882 0.1701682 2.834903 0.6976390 4.6034538 0.6976390 0.4432414 2.7047617 0.1396000 0.033325 0.229950 0.196625 0.03778512 0.03778512 FALSE TRUE
MSTRG.17014.10 ENSG00000082258 No_inf pgKDN_inf CCNT2 protein_coding   19.41945 17.8338 20.06766 1.112113 1.283882 0.1701682 2.138875 2.9413927 1.7614442 0.5393849 0.3918137 -0.7364699 0.1103583 0.162450 0.086050 -0.076400 0.59113086 0.03778512 FALSE TRUE
MSTRG.17014.6 ENSG00000082258 No_inf pgKDN_inf CCNT2 protein_coding   19.41945 17.8338 20.06766 1.112113 1.283882 0.1701682 3.508015 4.2318244 2.7309243 0.2690215 0.5129927 -0.6300224 0.1845500 0.241775 0.136175 -0.105600 0.52373105 0.03778512 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000082258 E001 0.0000000       2 134918235 134918240 6 +      
ENSG00000082258 E002 0.0000000       2 134918241 134918336 96 +      
ENSG00000082258 E003 0.0000000       2 134918337 134918821 485 +      
ENSG00000082258 E004 0.2357071 0.0156411963 0.1633607966   2 134918822 134918836 15 + 0.193 0.000 -10.858
ENSG00000082258 E005 0.7138528 0.0658340555 0.0538059577 0.23076044 2 134918837 134918842 6 + 0.381 0.084 -2.716
ENSG00000082258 E006 1.5666110 0.1600812383 0.1262555749 0.37676544 2 134918843 134918846 4 + 0.547 0.268 -1.563
ENSG00000082258 E007 9.1215176 0.0020841598 0.0083795110 0.07134026 2 134918847 134919012 166 + 1.125 0.882 -0.899
ENSG00000082258 E008 6.4782719 0.0022348605 0.1704470248 0.44263418 2 134919810 134919891 82 + 0.947 0.802 -0.558
ENSG00000082258 E009 0.1176306 0.0117523556 0.4094728345   2 134919892 134920362 471 + 0.107 0.000 -11.925
ENSG00000082258 E010 8.2570794 0.0033736707 0.0012507420 0.01777537 2 134936841 134936969 129 + 1.116 0.802 -1.177
ENSG00000082258 E011 6.7988800 0.0401269701 0.0114484712 0.08795753 2 134939002 134939062 61 + 1.046 0.722 -1.243
ENSG00000082258 E012 5.2633076 0.0026635224 0.3099786741 0.60326886 2 134942612 134942674 63 + 0.856 0.739 -0.461
ENSG00000082258 E013 1.7123735 0.1110244116 0.6031846923 0.82694873 2 134942675 134942769 95 + 0.472 0.397 -0.394
ENSG00000082258 E014 8.2619639 0.0021598968 0.6146165703 0.83260878 2 134945468 134945786 319 + 0.933 0.980 0.173
ENSG00000082258 E015 4.1204447 0.0153051888 0.0292530491 0.16050272 2 134945787 134945888 102 + 0.511 0.802 1.250
ENSG00000082258 E016 2.8615427 0.0411052848 0.1229802607 0.37112910 2 134945889 134945975 87 + 0.429 0.665 1.108
ENSG00000082258 E017 1.9930160 0.0599436982 0.1675246668 0.43813769 2 134945976 134945982 7 + 0.327 0.552 1.191
ENSG00000082258 E018 4.7162637 0.0121571843 0.1564638254 0.42271803 2 134946101 134946146 46 + 0.640 0.816 0.721
ENSG00000082258 E019 6.1056396 0.0237283127 0.0289986141 0.15970706 2 134946147 134946337 191 + 0.667 0.939 1.075
ENSG00000082258 E020 5.9152669 0.0022923716 0.8127287900 0.93120570 2 134946338 134946465 128 + 0.820 0.844 0.091
ENSG00000082258 E021 22.9913923 0.0113190857 0.1984336184 0.47982951 2 134946466 134947729 1264 + 1.321 1.407 0.301
ENSG00000082258 E022 1.9792700 0.0070407816 0.6364745459 0.84488564 2 134947730 134947735 6 + 0.429 0.496 0.343
ENSG00000082258 E023 6.6682378 0.0046903386 0.5133007444 0.77016596 2 134947736 134947825 90 + 0.838 0.906 0.258
ENSG00000082258 E024 8.2596731 0.0058299096 0.6283743268 0.84037743 2 134947826 134947899 74 + 0.933 0.980 0.173
ENSG00000082258 E025 11.1423473 0.0105988357 0.2122476130 0.49744435 2 134952641 134952711 71 + 1.143 1.026 -0.426
ENSG00000082258 E026 0.7353770 0.0139739353 0.7468157094 0.89985676 2 134952712 134953198 487 + 0.265 0.215 -0.394
ENSG00000082258 E027 9.2568126 0.0694652785 0.1008860482 0.33159779 2 134953230 134953268 39 + 1.135 0.882 -0.933
ENSG00000082258 E028 101.2569039 0.0002018320 0.1306667633 0.38338490 2 134953269 134954379 1111 + 2.029 1.984 -0.149
ENSG00000082258 E029 8.0562250 0.0019771641 0.0703696099 0.26843379 2 134954380 134954480 101 + 1.045 0.870 -0.657
ENSG00000082258 E030 264.4695746 0.0001052033 0.0005996885 0.01005701 2 134954481 134959342 4862 + 2.392 2.435 0.143

Help

Please Click HERE to learn more details about the results from DEXseq.