ENSG00000082701

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000264235 ENSG00000082701 No_inf pgKDN_inf GSK3B protein_coding protein_coding 74.48539 15.9186 140.3885 3.781752 56.56841 3.139836 4.692357 2.7519232 4.9401692 0.9437723 1.8260261 0.8418046 0.16330833 0.226100 0.099000 -0.127100 0.799128651 0.000689233 FALSE TRUE
ENST00000316626 ENSG00000082701 No_inf pgKDN_inf GSK3B protein_coding protein_coding 74.48539 15.9186 140.3885 3.781752 56.56841 3.139836 4.132788 5.3676001 4.3898360 0.4269046 1.0018949 -0.2895127 0.15807500 0.377100 0.051925 -0.325175 0.000689233 0.000689233 FALSE TRUE
ENST00000474830 ENSG00000082701 No_inf pgKDN_inf GSK3B protein_coding retained_intron 74.48539 15.9186 140.3885 3.781752 56.56841 3.139836 1.163743 1.7244229 0.2635976 0.3881934 0.2635976 -2.6643282 0.05002500 0.111125 0.005225 -0.105900 0.005626127 0.000689233   FALSE
ENST00000677362 ENSG00000082701 No_inf pgKDN_inf GSK3B protein_coding protein_coding 74.48539 15.9186 140.3885 3.781752 56.56841 3.139836 32.140633 0.0000000 96.4218991 0.0000000 55.8742700 13.2352947 0.13515833 0.000000 0.405475 0.405475 0.842418997 0.000689233   FALSE
ENST00000677502 ENSG00000082701 No_inf pgKDN_inf GSK3B protein_coding protein_coding_CDS_not_defined 74.48539 15.9186 140.3885 3.781752 56.56841 3.139836 4.505696 0.9419865 7.3321955 0.6119711 1.7391438 2.9471985 0.11145833 0.075375 0.122075 0.046700 0.841002552 0.000689233 FALSE TRUE
ENST00000677878 ENSG00000082701 No_inf pgKDN_inf GSK3B protein_coding protein_coding 74.48539 15.9186 140.3885 3.781752 56.56841 3.139836 2.053635 0.0000000 6.1609048 0.0000000 6.1609048 9.2693382 0.04070833 0.000000 0.122125 0.122125 0.939182662 0.000689233 FALSE FALSE
ENST00000677885 ENSG00000082701 No_inf pgKDN_inf GSK3B protein_coding protein_coding 74.48539 15.9186 140.3885 3.781752 56.56841 3.139836 8.934750 0.0000000 4.6323289 0.0000000 4.6323289 8.8587049 0.05605000 0.000000 0.019100 0.019100 1.000000000 0.000689233   FALSE
ENST00000678787 ENSG00000082701 No_inf pgKDN_inf GSK3B protein_coding protein_coding 74.48539 15.9186 140.3885 3.781752 56.56841 3.139836 5.734447 2.5883267 0.0000000 2.5883267 0.0000000 -8.0214390 0.13361667 0.095050 0.000000 -0.095050 0.518871267 0.000689233   FALSE
ENST00000679194 ENSG00000082701 No_inf pgKDN_inf GSK3B protein_coding nonsense_mediated_decay 74.48539 15.9186 140.3885 3.781752 56.56841 3.139836 1.523984 1.1220047 3.4499483 1.1220047 3.4499483 1.6118706 0.04679167 0.041200 0.099175 0.057975 0.815438991 0.000689233 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000082701 E001 0.0000000       3 119821321 119821321 1 -      
ENSG00000082701 E002 1.0822253 0.0118484514 2.451930e-01 5.356574e-01 3 119821322 119821358 37 - 0.385 0.201 -1.281
ENSG00000082701 E003 16.6872564 0.0048182534 1.089060e-02 8.505677e-02 3 119821359 119821949 591 - 1.154 1.340 0.654
ENSG00000082701 E004 273.7624016 0.0001560870 2.291381e-10 2.191194e-08 3 119821950 119826405 4456 - 2.399 2.478 0.265
ENSG00000082701 E005 8.2131118 0.0017784824 1.567344e-01 4.231303e-01 3 119826406 119826676 271 - 1.016 0.873 -0.538
ENSG00000082701 E006 2.8963754 0.0057513808 2.450667e-01 5.355070e-01 3 119826677 119826677 1 - 0.650 0.485 -0.754
ENSG00000082701 E007 4.2306407 0.0619693482 3.445402e-01 6.357429e-01 3 119826678 119826685 8 - 0.771 0.626 -0.600
ENSG00000082701 E008 3.7478073 0.0452736888 3.837858e-01 6.698739e-01 3 119826686 119826692 7 - 0.723 0.595 -0.544
ENSG00000082701 E009 3.2415855 0.0139868734 4.996006e-02 2.206655e-01 3 119826693 119826706 14 - 0.723 0.441 -1.281
ENSG00000082701 E010 14.3153978 0.0037118941 4.578697e-01 7.297501e-01 3 119826707 119826855 149 - 1.207 1.144 -0.224
ENSG00000082701 E011 0.0000000       3 119831102 119831251 150 -      
ENSG00000082701 E012 0.0000000       3 119838249 119838277 29 -      
ENSG00000082701 E013 0.0000000       3 119840797 119840862 66 -      
ENSG00000082701 E014 0.0000000       3 119840863 119840935 73 -      
ENSG00000082701 E015 14.7430020 0.0009958052 6.158638e-01 8.333793e-01 3 119843255 119843353 99 - 1.178 1.212 0.119
ENSG00000082701 E016 0.1268540 0.0122628852 3.656782e-01   3 119843354 119843609 256 - 0.000 0.112 13.276
ENSG00000082701 E017 0.0000000       3 119847355 119847452 98 -      
ENSG00000082701 E018 0.3628408 0.0165452080 8.442434e-01   3 119862665 119863418 754 - 0.149 0.112 -0.473
ENSG00000082701 E019 22.9807938 0.0091622155 3.444370e-02 1.772940e-01 3 119863419 119863605 187 - 1.436 1.277 -0.554
ENSG00000082701 E020 0.2537694 0.0159923314 1.384463e-01   3 119864971 119864998 28 - 0.000 0.201 14.210
ENSG00000082701 E021 1.2246634 0.0103080766 5.592269e-01 8.005013e-01 3 119866590 119866628 39 - 0.305 0.392 0.527
ENSG00000082701 E022 0.0000000       3 119870508 119870536 29 -      
ENSG00000082701 E023 0.0000000       3 119875080 119875185 106 -      
ENSG00000082701 E024 15.6335189 0.0265670749 2.428417e-01 5.325022e-01 3 119876413 119876508 96 - 1.263 1.144 -0.424
ENSG00000082701 E025 0.1272623 0.0123092656 3.656306e-01   3 119879225 119880244 1020 - 0.000 0.112 13.276
ENSG00000082701 E026 0.1272623 0.0123092656 3.656306e-01   3 119880245 119880498 254 - 0.000 0.112 13.276
ENSG00000082701 E027 0.0000000       3 119880499 119880510 12 -      
ENSG00000082701 E028 0.1176306 0.0117184382 7.876889e-01   3 119880797 119880826 30 - 0.081 0.000 -13.594
ENSG00000082701 E029 0.0000000       3 119881161 119881270 110 -      
ENSG00000082701 E030 0.2451451 0.0162405833 7.709092e-01   3 119882637 119882834 198 - 0.081 0.112 0.527
ENSG00000082701 E031 0.1170040 0.0117012094 7.876049e-01   3 119884353 119884382 30 - 0.081 0.000 -13.594
ENSG00000082701 E032 0.0000000       3 119900558 119900613 56 -      
ENSG00000082701 E033 0.0000000       3 119901945 119901973 29 -      
ENSG00000082701 E034 0.3627758 0.0165540417 8.442838e-01   3 119905464 119905754 291 - 0.149 0.112 -0.473
ENSG00000082701 E035 14.0562285 0.0082992735 2.073838e-01 4.910179e-01 3 119905755 119905852 98 - 1.218 1.106 -0.400
ENSG00000082701 E036 0.2352613 0.2140389325 4.512151e-01   3 119906792 119906916 125 - 0.149 0.000 -14.072
ENSG00000082701 E037 0.1265070 0.0122502912 3.657131e-01   3 119907235 119907263 29 - 0.000 0.112 13.276
ENSG00000082701 E038 9.5507093 0.0014771076 1.541273e-01 4.193674e-01 3 119912704 119912750 47 - 1.072 0.936 -0.501
ENSG00000082701 E039 9.8996127 0.0447735616 3.040671e-01 5.975425e-01 3 119912751 119912800 50 - 1.087 0.951 -0.499
ENSG00000082701 E040 5.7660507 0.2144453103 2.969760e-01 5.902312e-01 3 119912801 119912810 10 - 0.910 0.683 -0.900
ENSG00000082701 E041 0.0000000       3 119916040 119916043 4 -      
ENSG00000082701 E042 13.8360846 0.0361781170 7.237111e-01 8.890319e-01 3 119916044 119916174 131 - 1.184 1.144 -0.143
ENSG00000082701 E043 0.0000000       3 119920522 119920551 30 -      
ENSG00000082701 E044 0.1272623 0.0123092656 3.656306e-01   3 119921624 119921652 29 - 0.000 0.112 13.276
ENSG00000082701 E045 12.2168798 0.0272722224 1.858509e-01 4.638017e-01 3 119923373 119923479 107 - 1.172 1.029 -0.517
ENSG00000082701 E046 5.5174137 0.0148830957 1.095754e-02 8.537762e-02 3 119923480 119923483 4 - 0.921 0.595 -1.321
ENSG00000082701 E047 0.6091533 0.0180383932 9.741771e-01 9.953877e-01 3 119924405 119924433 29 - 0.207 0.201 -0.058
ENSG00000082701 E048 0.0000000       3 119946900 119946929 30 -      
ENSG00000082701 E049 0.0000000       3 119947264 119947267 4 -      
ENSG00000082701 E050 12.2618332 0.0113437127 3.737178e-03 4.049848e-02 3 119947268 119947351 84 - 1.217 0.936 -1.021
ENSG00000082701 E051 0.0000000       3 119949695 119949728 34 -      
ENSG00000082701 E052 0.0000000       3 119962725 119962832 108 -      
ENSG00000082701 E053 0.0000000       3 119973194 119973258 65 -      
ENSG00000082701 E054 0.0000000       3 119976485 119976545 61 -      
ENSG00000082701 E055 0.0000000       3 119981957 119982125 169 -      
ENSG00000082701 E056 1.5874679 0.0097947159 6.958801e-01 8.759241e-01 3 119996690 120000551 3862 - 0.385 0.441 0.304
ENSG00000082701 E057 0.2458395 0.0160908753 7.707664e-01   3 120000552 120000723 172 - 0.081 0.112 0.527
ENSG00000082701 E058 0.0000000       3 120000959 120001252 294 -      
ENSG00000082701 E059 0.3726284 0.0167945474 3.773073e-01   3 120001253 120002045 793 - 0.081 0.201 1.527
ENSG00000082701 E060 17.6761426 0.0010099157 1.073766e-01 3.434498e-01 3 120002046 120002236 191 - 1.313 1.196 -0.415
ENSG00000082701 E061 4.3801508 0.0588730702 9.456736e-01 9.853363e-01 3 120002237 120002239 3 - 0.723 0.733 0.041
ENSG00000082701 E062 0.0000000       3 120002240 120002409 170 -      
ENSG00000082701 E063 0.1265070 0.0122502912 3.657131e-01   3 120013083 120013215 133 - 0.000 0.112 13.276
ENSG00000082701 E064 0.0000000       3 120015389 120015542 154 -      
ENSG00000082701 E065 0.0000000       3 120021579 120021626 48 -      
ENSG00000082701 E066 0.0000000       3 120074264 120074298 35 -      
ENSG00000082701 E067 0.1187032 0.0117886934 7.876285e-01   3 120086336 120086365 30 - 0.081 0.000 -13.594
ENSG00000082701 E068 0.2536433 0.0160025508 1.384687e-01   3 120093343 120093346 4 - 0.000 0.201 14.210
ENSG00000082701 E069 20.3918666 0.0012914608 1.612224e-01 4.293585e-01 3 120093347 120093593 247 - 1.287 1.373 0.302
ENSG00000082701 E070 13.1878699 0.0010738999 9.807966e-02 3.266334e-01 3 120093594 120093792 199 - 1.201 1.064 -0.493
ENSG00000082701 E071 17.7843567 0.0018461408 6.826811e-02 2.637229e-01 3 120093793 120094486 694 - 1.322 1.187 -0.473
ENSG00000082701 E072 0.3644125 0.1643427896 8.704120e-01   3 120094543 120094571 29 - 0.149 0.112 -0.474
ENSG00000082701 E073 0.0000000       3 120094966 120094994 29 -      

Help

Please Click HERE to learn more details about the results from DEXseq.