ENSG00000082898

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000420673 ENSG00000082898 No_inf pgKDN_inf XPO1 protein_coding protein_coding_CDS_not_defined 129.7043 156.2253 127.0421 2.12655 1.747629 -0.2983004 7.104351 12.977749 5.018262 0.9602128 0.4899069 -1.3690198 0.05140833 0.083250 0.03965 -0.043600 0.1382081225 0.0009433277 FALSE FALSE
ENST00000676789 ENSG00000082898 No_inf pgKDN_inf XPO1 protein_coding protein_coding 129.7043 156.2253 127.0421 2.12655 1.747629 -0.2983004 7.088681 3.717901 7.806706 1.1442451 0.4903036 1.0681973 0.05917500 0.023700 0.06155 0.037850 0.1468328269 0.0009433277 FALSE TRUE
MSTRG.16352.46 ENSG00000082898 No_inf pgKDN_inf XPO1 protein_coding   129.7043 156.2253 127.0421 2.12655 1.747629 -0.2983004 42.698080 34.468514 52.861025 3.2412014 3.1475303 0.6167797 0.34055833 0.220225 0.41625 0.196025 0.0009433277 0.0009433277 FALSE TRUE
MSTRG.16352.6 ENSG00000082898 No_inf pgKDN_inf XPO1 protein_coding   129.7043 156.2253 127.0421 2.12655 1.747629 -0.2983004 40.039444 54.947248 39.119802 2.9321481 3.7806665 -0.4900419 0.30232500 0.352225 0.30860 -0.043625 0.8135370312 0.0009433277 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000082898 E001 4.2349565 5.334508e-03 5.607239e-02 2.360634e-01 2 61476032 61477688 1657 - 0.551 0.797 1.044
ENSG00000082898 E002 1.6982657 7.340518e-02 1.523136e-01 4.162215e-01 2 61477689 61477848 160 - 0.551 0.313 -1.279
ENSG00000082898 E003 1.3500391 1.085403e-02 8.471865e-01 9.457834e-01 2 61477849 61477933 85 - 0.384 0.355 -0.167
ENSG00000082898 E004 1.8226729 1.154890e-02 1.832146e-01 4.599255e-01 2 61477934 61477941 8 - 0.551 0.355 -1.015
ENSG00000082898 E005 1.9236572 7.237148e-03 9.302525e-03 7.674182e-02 2 61477942 61477946 5 - 0.644 0.266 -2.015
ENSG00000082898 E006 2.8024111 5.004179e-03 1.844689e-01 4.616130e-01 2 61477947 61477953 7 - 0.672 0.493 -0.809
ENSG00000082898 E007 4.5339815 3.130962e-03 4.615574e-01 7.322334e-01 2 61477954 61477968 15 - 0.786 0.699 -0.352
ENSG00000082898 E008 4.9062291 2.838987e-03 5.340920e-01 7.843199e-01 2 61477969 61477969 1 - 0.806 0.735 -0.286
ENSG00000082898 E009 9.5964828 2.252654e-03 8.569126e-01 9.497888e-01 2 61477970 61477979 10 - 1.028 1.012 -0.058
ENSG00000082898 E010 18.5652722 8.080799e-03 7.056999e-01 8.804868e-01 2 61477980 61477992 13 - 1.302 1.272 -0.104
ENSG00000082898 E011 229.3139341 8.543870e-05 7.331851e-01 8.938976e-01 2 61477993 61478337 345 - 2.359 2.352 -0.020
ENSG00000082898 E012 357.6888024 7.576154e-04 7.229531e-01 8.886033e-01 2 61478338 61478699 362 - 2.543 2.550 0.024
ENSG00000082898 E013 314.4457723 7.242607e-05 2.399748e-02 1.418807e-01 2 61478700 61478966 267 - 2.513 2.476 -0.125
ENSG00000082898 E014 118.5827447 1.406269e-04 8.746275e-02 3.065601e-01 2 61481185 61481281 97 - 2.097 2.050 -0.157
ENSG00000082898 E015 7.7158484 3.972586e-02 4.478358e-02 2.069361e-01 2 61481282 61482086 805 - 0.766 1.021 0.974
ENSG00000082898 E016 3.5194500 4.063369e-03 1.380404e-03 1.919462e-02 2 61482087 61482379 293 - 0.330 0.782 2.155
ENSG00000082898 E017 108.2093024 2.203902e-04 7.379476e-01 8.960279e-01 2 61482380 61482426 47 - 2.036 2.027 -0.031
ENSG00000082898 E018 109.9366714 1.971061e-04 7.882034e-01 9.187606e-01 2 61482427 61482539 113 - 2.042 2.035 -0.024
ENSG00000082898 E019 1.6165182 1.616844e-01 5.040867e-01 7.633482e-01 2 61482540 61482624 85 - 0.330 0.462 0.738
ENSG00000082898 E020 0.0000000       2 61482625 61482817 193 -      
ENSG00000082898 E021 0.0000000       2 61482818 61482956 139 -      
ENSG00000082898 E022 0.0000000       2 61482957 61483091 135 -      
ENSG00000082898 E023 0.0000000       2 61483092 61483122 31 -      
ENSG00000082898 E024 0.0000000       2 61483937 61484105 169 -      
ENSG00000082898 E025 5.4203761 2.555709e-03 8.264113e-01 9.371474e-01 2 61484106 61485767 1662 - 0.786 0.812 0.100
ENSG00000082898 E026 137.0286323 1.285925e-04 8.864675e-01 9.620254e-01 2 61485768 61485962 195 - 2.134 2.131 -0.010
ENSG00000082898 E027 2.5941124 5.871252e-03 6.819606e-01 8.683333e-01 2 61485963 61487541 1579 - 0.515 0.573 0.270
ENSG00000082898 E028 74.8247228 2.104679e-04 1.254829e-01 3.754852e-01 2 61488165 61488213 49 - 1.903 1.850 -0.179
ENSG00000082898 E029 89.4886435 2.570602e-03 8.019631e-01 9.261025e-01 2 61488214 61488271 58 - 1.954 1.946 -0.027
ENSG00000082898 E030 56.8053814 8.518198e-04 6.416748e-01 8.479050e-01 2 61488588 61488590 3 - 1.742 1.763 0.069
ENSG00000082898 E031 195.1632514 1.027044e-04 1.742287e-01 4.478531e-01 2 61488591 61488771 181 - 2.302 2.273 -0.096
ENSG00000082898 E032 0.7367590 6.826483e-02 7.264109e-01 8.904754e-01 2 61488772 61488932 161 - 0.268 0.213 -0.431
ENSG00000082898 E033 137.2457562 1.458154e-04 4.257500e-02 2.010756e-01 2 61490642 61490776 135 - 2.163 2.111 -0.174
ENSG00000082898 E034 138.0724114 1.830018e-04 5.272995e-01 7.793965e-01 2 61492035 61492196 162 - 2.145 2.129 -0.053
ENSG00000082898 E035 40.9097802 3.352002e-04 8.018611e-01 9.261025e-01 2 61492197 61492198 2 - 1.607 1.620 0.043
ENSG00000082898 E036 139.0212156 1.823020e-04 4.699699e-01 7.379314e-01 2 61492325 61492481 157 - 2.149 2.131 -0.061
ENSG00000082898 E037 145.8935717 2.054187e-04 2.224971e-02 1.356257e-01 2 61492567 61492748 182 - 2.193 2.135 -0.192
ENSG00000082898 E038 1.1332760 1.049505e-02 4.094839e-02 1.963993e-01 2 61492749 61492914 166 - 0.109 0.429 2.570
ENSG00000082898 E039 116.8871160 1.476803e-04 1.016962e-03 1.519358e-02 2 61492915 61493053 139 - 2.116 2.024 -0.306
ENSG00000082898 E040 3.1019361 5.625551e-03 2.861131e-01 5.797614e-01 2 61493054 61493637 584 - 0.515 0.661 0.657
ENSG00000082898 E041 2.3209861 2.452743e-01 3.851377e-01 6.712126e-01 2 61493638 61493893 256 - 0.585 0.462 -0.584
ENSG00000082898 E042 141.1368254 1.235695e-04 1.423875e-03 1.964576e-02 2 61493894 61494091 198 - 2.191 2.111 -0.270
ENSG00000082898 E043 3.3734239 4.114883e-03 2.822435e-02 1.571600e-01 2 61494092 61495454 1363 - 0.432 0.735 1.377
ENSG00000082898 E044 95.8794347 2.379692e-03 5.242742e-03 5.137392e-02 2 61495455 61495613 159 - 2.036 1.934 -0.342
ENSG00000082898 E045 69.1895081 2.167932e-04 2.938726e-01 5.873089e-01 2 61496879 61496960 82 - 1.861 1.823 -0.127
ENSG00000082898 E046 59.4500708 3.637611e-04 9.605686e-01 9.911779e-01 2 61496961 61497007 47 - 1.773 1.775 0.009
ENSG00000082898 E047 3.2126176 4.437796e-03 6.758459e-01 8.657865e-01 2 61497008 61498672 1665 - 0.584 0.641 0.248
ENSG00000082898 E048 64.4830099 1.566059e-03 8.675958e-01 9.544899e-01 2 61498673 61498739 67 - 1.812 1.806 -0.020
ENSG00000082898 E049 57.9977806 2.884631e-04 1.941511e-01 4.739571e-01 2 61498740 61498792 53 - 1.731 1.784 0.180
ENSG00000082898 E050 1.5048057 9.064519e-03 5.762940e-02 2.401255e-01 2 61498793 61498864 72 - 0.195 0.493 1.892
ENSG00000082898 E051 49.6423227 3.359155e-04 6.962460e-02 2.668325e-01 2 61498865 61498913 49 - 1.648 1.728 0.272
ENSG00000082898 E052 103.0826596 2.414633e-04 6.689939e-01 8.622865e-01 2 61499713 61499894 182 - 2.002 2.016 0.046
ENSG00000082898 E053 2.2408766 7.124048e-03 2.010870e-01 4.832648e-01 2 61499895 61500568 674 - 0.384 0.573 0.948
ENSG00000082898 E054 31.8188488 4.812928e-04 3.342709e-01 6.261441e-01 2 61501996 61502005 10 - 1.538 1.488 -0.173
ENSG00000082898 E055 41.2066442 4.029345e-04 6.269985e-01 8.397894e-01 2 61502006 61502036 31 - 1.631 1.609 -0.075
ENSG00000082898 E056 29.3547917 4.746385e-04 2.838020e-01 5.775169e-01 2 61502037 61502040 4 - 1.509 1.450 -0.201
ENSG00000082898 E057 0.8687476 3.102164e-02 4.555797e-01 7.280543e-01 2 61502146 61502248 103 - 0.195 0.313 0.892
ENSG00000082898 E058 45.3211487 3.231019e-04 2.125260e-01 4.977151e-01 2 61502249 61502289 41 - 1.690 1.635 -0.187
ENSG00000082898 E059 35.9625914 3.777603e-04 1.507112e-01 4.134095e-01 2 61502290 61502310 21 - 1.601 1.530 -0.243
ENSG00000082898 E060 2.0115887 3.661519e-02 1.376067e-02 9.889565e-02 2 61502311 61502608 298 - 0.195 0.597 2.377
ENSG00000082898 E061 2.2233738 1.023869e-01 8.103977e-01 9.301186e-01 2 61510623 61510929 307 - 0.476 0.521 0.220
ENSG00000082898 E062 0.9951260 1.698218e-02 3.082011e-01 6.013827e-01 2 61514062 61514200 139 - 0.195 0.355 1.155
ENSG00000082898 E063 3.8742866 7.563870e-02 6.468554e-02 2.563749e-01 2 61514201 61514982 782 - 0.475 0.783 1.348
ENSG00000082898 E064 1.3780455 9.361217e-03 8.849762e-02 3.086207e-01 2 61516342 61516383 42 - 0.195 0.462 1.740
ENSG00000082898 E065 0.2541163 1.598025e-02 3.634291e-01   2 61520391 61520475 85 - 0.000 0.153 9.667
ENSG00000082898 E066 46.2859222 3.053320e-04 1.623840e-01 4.308263e-01 2 61522611 61522683 73 - 1.703 1.641 -0.208
ENSG00000082898 E067 25.9713712 1.176006e-03 1.185214e-14 1.960838e-12 2 61522684 61523690 1007 - 1.039 1.571 1.867
ENSG00000082898 E068 5.5467437 2.608266e-03 1.040369e-06 4.837176e-05 2 61525270 61525333 64 - 0.330 0.975 2.892
ENSG00000082898 E069 3.6753480 1.026679e-02 1.816778e-06 7.820122e-05 2 61525334 61525491 158 - 0.109 0.839 4.377
ENSG00000082898 E070 15.4792117 4.368307e-03 2.351956e-05 7.086615e-04 2 61525492 61526066 575 - 0.966 1.323 1.282
ENSG00000082898 E071 3.9669063 3.434413e-02 4.114583e-01 6.931191e-01 2 61526067 61526150 84 - 0.615 0.735 0.503
ENSG00000082898 E072 5.1627457 2.892676e-02 1.495948e-04 3.294507e-03 2 61526151 61526419 269 - 0.384 0.934 2.418
ENSG00000082898 E073 31.0145498 4.471474e-04 5.452022e-02 2.325691e-01 2 61526420 61526461 42 - 1.556 1.453 -0.351
ENSG00000082898 E074 34.6458761 1.400421e-03 1.337089e-02 9.704553e-02 2 61526462 61526505 44 - 1.616 1.488 -0.441
ENSG00000082898 E075 28.0612317 1.905174e-03 6.474245e-02 2.565251e-01 2 61526506 61526521 16 - 1.516 1.409 -0.367
ENSG00000082898 E076 0.3804973 1.583425e-02 1.751525e-01   2 61526522 61526523 2 - 0.000 0.213 10.239
ENSG00000082898 E077 0.0000000       2 61529066 61529159 94 -      
ENSG00000082898 E078 58.5144835 2.794709e-03 4.181182e-03 4.379881e-02 2 61533772 61533903 132 - 1.838 1.711 -0.430
ENSG00000082898 E079 38.1345038 3.625791e-04 1.502863e-09 1.243181e-07 2 61533904 61534422 519 - 1.370 1.689 1.092
ENSG00000082898 E080 9.3661425 1.541154e-03 3.531596e-04 6.650597e-03 2 61534423 61534518 96 - 0.766 1.122 1.340
ENSG00000082898 E081 6.0101891 9.157011e-03 8.207600e-04 1.286828e-02 2 61534519 61534557 39 - 0.551 0.965 1.685
ENSG00000082898 E082 15.6208820 1.175589e-02 1.868348e-05 5.821345e-04 2 61534558 61534654 97 - 0.938 1.336 1.429
ENSG00000082898 E083 8.7574016 3.263545e-02 1.154567e-03 1.671480e-02 2 61534655 61534678 24 - 0.697 1.107 1.570
ENSG00000082898 E084 144.5385488 1.420231e-04 2.093847e-47 2.823238e-44 2 61534679 61536201 1523 - 1.871 2.280 1.371
ENSG00000082898 E085 41.2194212 3.331559e-04 2.455833e-14 3.965655e-12 2 61536202 61536709 508 - 1.343 1.740 1.360
ENSG00000082898 E086 6.9050825 3.125167e-02 6.517338e-01 8.533477e-01 2 61536710 61536869 160 - 0.860 0.912 0.198
ENSG00000082898 E087 6.4213264 2.149233e-03 5.535180e-01 7.966441e-01 2 61536870 61537018 149 - 0.825 0.889 0.248
ENSG00000082898 E088 4.2264015 9.391633e-03 1.266277e-01 3.772393e-01 2 61537019 61537117 99 - 0.584 0.783 0.833
ENSG00000082898 E089 15.0521941 2.313805e-02 1.160273e-03 1.677250e-02 2 61537562 61537587 26 - 1.354 1.046 -1.093
ENSG00000082898 E090 21.3510255 1.697726e-02 8.460433e-03 7.182286e-02 2 61537588 61537668 81 - 1.456 1.242 -0.745
ENSG00000082898 E091 15.4140160 2.546352e-03 4.966745e-02 2.198592e-01 2 61537669 61537743 75 - 1.289 1.142 -0.522
ENSG00000082898 E092 19.2477656 1.022131e-03 3.535050e-04 6.652456e-03 2 61537744 61538069 326 - 1.424 1.186 -0.835
ENSG00000082898 E093 2.3267479 2.368102e-02 4.049457e-01 6.876465e-01 2 61538070 61538137 68 - 0.585 0.462 -0.583
ENSG00000082898 E094 3.9518929 1.008374e-01 8.634081e-01 9.527896e-01 2 61538138 61538191 54 - 0.672 0.700 0.116
ENSG00000082898 E095 5.7454910 4.926598e-03 1.539543e-01 4.190074e-01 2 61538192 61538491 300 - 0.909 0.751 -0.615
ENSG00000082898 E096 0.4879983 9.578453e-02 7.813492e-01   2 61538492 61538741 250 - 0.195 0.153 -0.430

Help

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