ENSG00000084090

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000337288 ENSG00000084090 No_inf pgKDN_inf STARD7 protein_coding protein_coding 57.30041 50.34689 63.68866 4.117947 3.250354 0.3390739 46.020083 35.901321 54.2758228 1.4844149 0.7492261 0.5961368 0.80775833 0.724900 0.859425 0.134525 0.458773072 0.002377284 FALSE  
ENST00000479456 ENSG00000084090 No_inf pgKDN_inf STARD7 protein_coding retained_intron 57.30041 50.34689 63.68866 4.117947 3.250354 0.3390739 1.641413 3.539141 0.2613733 0.2053473 0.1739643 -3.7091192 0.03206667 0.071925 0.004550 -0.067375 0.002377284 0.002377284 FALSE  
ENST00000495687 ENSG00000084090 No_inf pgKDN_inf STARD7 protein_coding retained_intron 57.30041 50.34689 63.68866 4.117947 3.250354 0.3390739 8.487806 9.283813 8.5851648 4.1977255 3.4409568 -0.1127453 0.13814167 0.168700 0.127400 -0.041300 0.970495136 0.002377284    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000084090 E001 0.2536433 1.598554e-02 0.1804645388   2 96184859 96184866 8 - 0.000 0.188 10.260
ENSG00000084090 E002 540.3397324 5.814548e-05 0.0003031261 0.005855588 2 96184867 96186749 1883 - 2.719 2.748 0.097
ENSG00000084090 E003 48.9524397 3.084809e-04 0.2344781976 0.523528196 2 96186750 96186914 165 - 1.721 1.670 -0.174
ENSG00000084090 E004 39.5871375 3.402440e-04 0.3627775084 0.651920344 2 96187217 96187301 85 - 1.627 1.584 -0.149
ENSG00000084090 E005 2.8815307 4.877891e-03 0.0002265573 0.004635487 2 96187302 96188117 816 - 0.275 0.788 2.537
ENSG00000084090 E006 46.6980733 3.243254e-04 0.7452082910 0.899209067 2 96192369 96192468 100 - 1.685 1.670 -0.051
ENSG00000084090 E007 0.4873690 9.973972e-02 0.8382495396   2 96193076 96193077 2 - 0.159 0.188 0.290
ENSG00000084090 E008 32.6048729 7.582845e-04 0.7114240695 0.883387723 2 96193078 96193130 53 - 1.517 1.535 0.062
ENSG00000084090 E009 22.2814363 6.253544e-03 0.4086708236 0.690905028 2 96193131 96193160 30 - 1.393 1.334 -0.204
ENSG00000084090 E010 2.3664024 6.287358e-03 0.0120816694 0.090956555 2 96193161 96193205 45 - 0.324 0.680 1.775
ENSG00000084090 E011 1.2362413 1.271878e-02 0.3470395262 0.637616413 2 96193206 96193241 36 - 0.275 0.419 0.874
ENSG00000084090 E012 26.5910223 7.611715e-04 0.0252677650 0.146282843 2 96193242 96193301 60 - 1.496 1.365 -0.451
ENSG00000084090 E013 23.8718328 1.038465e-03 0.0079025319 0.068556403 2 96193302 96193352 51 - 1.464 1.300 -0.570
ENSG00000084090 E014 25.7050528 8.561930e-04 0.0167958226 0.113021322 2 96194958 96195007 50 - 1.487 1.344 -0.491
ENSG00000084090 E015 0.0000000       2 96195008 96195009 2 -      
ENSG00000084090 E016 0.0000000       2 96195203 96195340 138 -      
ENSG00000084090 E017 52.7036157 1.746107e-02 0.3573700600 0.646987238 2 96195341 96195549 209 - 1.754 1.699 -0.188
ENSG00000084090 E018 28.5411998 4.979260e-04 0.8771831164 0.958326165 2 96208145 96208538 394 - 1.474 1.465 -0.033
ENSG00000084090 E019 0.0000000       2 96208539 96208827 289 -      

Help

Please Click HERE to learn more details about the results from DEXseq.