ENSG00000086102

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000318524 ENSG00000086102 No_inf pgKDN_inf NFX1 protein_coding protein_coding 38.7983 39.15162 39.35016 0.7933847 0.2584403 0.007295695 9.997797 12.5443841 7.267204 4.3073118 2.5163490 -0.7867351 0.25546667 0.317275 0.183650 -0.133625 0.8544561811 0.0002809705 FALSE TRUE
ENST00000379540 ENSG00000086102 No_inf pgKDN_inf NFX1 protein_coding protein_coding 38.7983 39.15162 39.35016 0.7933847 0.2584403 0.007295695 6.775007 0.4680275 10.831852 0.4680275 0.9493934 4.5033739 0.17578333 0.012325 0.275675 0.263350 0.0002809705 0.0002809705 FALSE TRUE
MSTRG.28603.1 ENSG00000086102 No_inf pgKDN_inf NFX1 protein_coding   38.7983 39.15162 39.35016 0.7933847 0.2584403 0.007295695 5.300506 3.4547934 7.247899 3.4547934 3.9442933 1.0667828 0.13917500 0.091725 0.185800 0.094075 0.3628598900 0.0002809705 FALSE TRUE
MSTRG.28603.2 ENSG00000086102 No_inf pgKDN_inf NFX1 protein_coding   38.7983 39.15162 39.35016 0.7933847 0.2584403 0.007295695 2.804018 3.4765404 1.783524 0.3350885 0.2434902 -0.9589990 0.07260000 0.088925 0.045250 -0.043675 0.4843354218 0.0002809705 TRUE TRUE
MSTRG.28603.7 ENSG00000086102 No_inf pgKDN_inf NFX1 protein_coding   38.7983 39.15162 39.35016 0.7933847 0.2584403 0.007295695 3.397774 2.8140653 5.149862 0.9926594 1.7011952 0.8695591 0.08674167 0.071275 0.130175 0.058900 0.8003024166 0.0002809705 FALSE TRUE
MSTRG.28603.8 ENSG00000086102 No_inf pgKDN_inf NFX1 protein_coding   38.7983 39.15162 39.35016 0.7933847 0.2584403 0.007295695 10.059474 16.0448097 6.464327 0.3755578 0.8827163 -1.3102034 0.25850000 0.409950 0.164150 -0.245800 0.0015706102 0.0002809705 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000086102 E001 0.6255466 0.1671498020 0.2290795780 0.517790289 9 33290509 33290511 3 + 0.095 0.297 2.007
ENSG00000086102 E002 0.8696843 0.2971771318 0.3696870843 0.657891022 9 33290512 33290515 4 + 0.173 0.348 1.330
ENSG00000086102 E003 2.3311197 0.0314696607 0.8438244325 0.944153153 9 33290516 33290544 29 + 0.505 0.538 0.159
ENSG00000086102 E004 7.3488120 0.0028989556 0.9842500962 0.998727939 9 33290545 33290597 53 + 0.920 0.922 0.007
ENSG00000086102 E005 0.9775358 0.0783769943 0.9922517314 1.000000000 9 33294400 33294419 20 + 0.296 0.297 0.008
ENSG00000086102 E006 122.2057114 0.0001343237 0.0044569535 0.045708562 9 33294420 33295427 1008 + 2.125 2.055 -0.233
ENSG00000086102 E007 33.6255454 0.0004302395 0.4077883313 0.690218248 9 33301263 33301421 159 + 1.558 1.520 -0.129
ENSG00000086102 E008 21.3535459 0.0007289087 0.1431016025 0.402883637 9 33303191 33303268 78 + 1.392 1.304 -0.307
ENSG00000086102 E009 28.9146962 0.0005161613 0.1251810606 0.375042513 9 33307194 33307299 106 + 1.515 1.435 -0.274
ENSG00000086102 E010 20.0329205 0.0012983853 0.4233446167 0.702630126 9 33311106 33311177 72 + 1.347 1.299 -0.169
ENSG00000086102 E011 24.9329196 0.0005661826 0.4627604476 0.732989873 9 33313654 33313793 140 + 1.433 1.394 -0.134
ENSG00000086102 E012 27.0579474 0.0027609883 0.0521812636 0.226781941 9 33318731 33318830 100 + 1.502 1.390 -0.385
ENSG00000086102 E013 32.9250782 0.0004331995 0.0004229857 0.007660615 9 33318910 33319020 111 + 1.613 1.435 -0.609
ENSG00000086102 E014 33.9809133 0.0004244245 0.3151761914 0.608030644 9 33319021 33319127 107 + 1.567 1.520 -0.159
ENSG00000086102 E015 26.8590648 0.0005088875 0.1656408259 0.435427806 9 33328581 33328678 98 + 1.481 1.407 -0.256
ENSG00000086102 E016 15.6351294 0.0072680738 0.5012130839 0.761292045 9 33332472 33332502 31 + 1.246 1.197 -0.173
ENSG00000086102 E017 0.3724075 0.0167760145 0.5867771936   9 33332503 33332657 155 + 0.095 0.173 1.007
ENSG00000086102 E018 2.3513952 0.1562868282 0.4150478048 0.695235016 9 33338507 33338509 3 + 0.433 0.596 0.784
ENSG00000086102 E019 26.2773711 0.0006110481 0.4324923594 0.709882921 9 33338510 33338589 80 + 1.456 1.415 -0.140
ENSG00000086102 E020 27.0961601 0.0004928633 0.1673733884 0.438060675 9 33342746 33342811 66 + 1.485 1.411 -0.253
ENSG00000086102 E021 20.7964284 0.0007746206 0.6243012200 0.838381106 9 33342812 33342854 43 + 1.352 1.325 -0.095
ENSG00000086102 E022 42.3132989 0.0040829237 0.6008714997 0.825314074 9 33344069 33344188 120 + 1.648 1.626 -0.076
ENSG00000086102 E023 31.3170314 0.0004592316 0.6779660331 0.866682125 9 33347038 33347117 80 + 1.518 1.501 -0.060
ENSG00000086102 E024 7.3062032 0.0020161732 0.1939732989 0.473770529 9 33347663 33347665 3 + 0.980 0.853 -0.478
ENSG00000086102 E025 130.6286189 0.0001497025 0.1513064281 0.414652016 9 33347666 33348995 1330 + 2.098 2.138 0.135
ENSG00000086102 E026 24.2147188 0.0020054306 0.1201186164 0.366429720 9 33351560 33351790 231 + 1.347 1.447 0.346
ENSG00000086102 E027 0.0000000       9 33351791 33351882 92 +      
ENSG00000086102 E028 11.9543188 0.0011506182 0.3043907302 0.597786463 9 33352646 33352719 74 + 1.152 1.072 -0.288
ENSG00000086102 E029 13.9486730 0.0010249964 0.8326103108 0.939629863 9 33354086 33354187 102 + 1.181 1.169 -0.043
ENSG00000086102 E030 11.6722168 0.0022309827 0.3770088888 0.664142393 9 33354851 33354892 42 + 1.061 1.139 0.281
ENSG00000086102 E031 16.0168646 0.0098247048 0.0912027994 0.313727392 9 33364010 33364108 99 + 1.152 1.293 0.500
ENSG00000086102 E032 16.6232302 0.0008220055 0.1093751124 0.347111239 9 33364708 33364774 67 + 1.181 1.299 0.416
ENSG00000086102 E033 7.6399519 0.0053477287 0.2264345355 0.514536349 9 33364775 33365232 458 + 0.866 0.993 0.477
ENSG00000086102 E034 10.4445989 0.0302907090 0.0035217793 0.038898964 9 33365233 33366009 777 + 0.852 1.190 1.246
ENSG00000086102 E035 11.6397564 0.0067463150 0.0037452287 0.040544995 9 33366010 33366628 619 + 0.945 1.210 0.961
ENSG00000086102 E036 33.8600080 0.0019976884 0.0197881911 0.126067456 9 33366629 33366774 146 + 1.471 1.600 0.441
ENSG00000086102 E037 22.9619473 0.0007426332 0.2894889906 0.583107978 9 33367515 33367619 105 + 1.342 1.411 0.239
ENSG00000086102 E038 128.0343087 0.0022151526 0.0012861142 0.018169586 9 33369906 33371157 1252 + 2.054 2.157 0.344

Help

Please Click HERE to learn more details about the results from DEXseq.