ENSG00000087152

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000389384 ENSG00000087152 No_inf pgKDN_inf ATXN7L3 protein_coding protein_coding 42.30326 50.28047 37.48975 4.462009 2.095906 -0.4234041 11.541361 12.436138 11.0247170 1.2311910 2.1680673 -0.1736485 0.28586667 0.257825 0.299200 0.041375 0.891728589 0.009855628 FALSE TRUE
ENST00000454077 ENSG00000087152 No_inf pgKDN_inf ATXN7L3 protein_coding protein_coding 42.30326 50.28047 37.48975 4.462009 2.095906 -0.4234041 9.411072 10.753106 8.8774615 1.4447550 1.8706583 -0.2762511 0.21814167 0.213950 0.233350 0.019400 0.958271600 0.009855628 FALSE TRUE
ENST00000586688 ENSG00000087152 No_inf pgKDN_inf ATXN7L3 protein_coding retained_intron 42.30326 50.28047 37.48975 4.462009 2.095906 -0.4234041 2.022861 4.213023 0.7177886 1.3933476 0.4157796 -2.5366848 0.04327500 0.081200 0.017975 -0.063225 0.328061222 0.009855628   FALSE
ENST00000587022 ENSG00000087152 No_inf pgKDN_inf ATXN7L3 protein_coding retained_intron 42.30326 50.28047 37.48975 4.462009 2.095906 -0.4234041 1.184766 3.554297 0.0000000 3.5542973 0.0000000 -8.4774739 0.01877500 0.056325 0.000000 -0.056325 0.873160931 0.009855628   FALSE
ENST00000587097 ENSG00000087152 No_inf pgKDN_inf ATXN7L3 protein_coding protein_coding 42.30326 50.28047 37.48975 4.462009 2.095906 -0.4234041 9.346424 6.299942 11.4919988 0.8249958 1.8548671 0.8661859 0.23362500 0.126600 0.308725 0.182125 0.103881055 0.009855628 FALSE TRUE
ENST00000590169 ENSG00000087152 No_inf pgKDN_inf ATXN7L3 protein_coding protein_coding 42.30326 50.28047 37.48975 4.462009 2.095906 -0.4234041 3.303176 7.097661 0.3998954 1.2367384 0.3998954 -4.1160472 0.06813333 0.140950 0.011025 -0.129925 0.009855628 0.009855628 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000087152 E001 404.2629882 0.0001560181 0.406818004 0.68941501 17 44191805 44194239 2435 - 2.600 2.610 0.034
ENSG00000087152 E002 35.5427621 0.0004713555 0.436359630 0.71280539 17 44194240 44194370 131 - 1.581 1.543 -0.129
ENSG00000087152 E003 20.2735585 0.0078868309 0.728963307 0.89194190 17 44194371 44194411 41 - 1.311 1.338 0.094
ENSG00000087152 E004 13.8788458 0.0041217068 0.838361778 0.94210680 17 44194517 44194539 23 - 1.161 1.178 0.061
ENSG00000087152 E005 27.0982581 0.0043546191 0.698885091 0.87729061 17 44194540 44194650 111 - 1.459 1.436 -0.077
ENSG00000087152 E006 11.1807540 0.0077530513 0.731916362 0.89338653 17 44194651 44194656 6 - 1.066 1.098 0.118
ENSG00000087152 E007 12.4046549 0.0013871177 0.765479287 0.90883020 17 44194657 44194674 18 - 1.112 1.137 0.089
ENSG00000087152 E008 0.1265070 0.0122884982 0.605382752   17 44194675 44194767 93 - 0.000 0.090 8.990
ENSG00000087152 E009 23.6892851 0.0005672766 0.909711720 0.97136228 17 44194768 44194839 72 - 1.387 1.394 0.026
ENSG00000087152 E010 1.4648438 0.2013586319 0.985587657 0.99904594 17 44194840 44195096 257 - 0.407 0.377 -0.167
ENSG00000087152 E011 19.6910611 0.0007514264 0.405149762 0.68788476 17 44195097 44195120 24 - 1.283 1.338 0.194
ENSG00000087152 E012 19.9550953 0.0006967305 0.196224365 0.47686950 17 44195121 44195140 20 - 1.271 1.356 0.298
ENSG00000087152 E013 1.6311242 0.0082667861 0.016876447 0.11332349 17 44195141 44195158 18 - 0.182 0.549 2.291
ENSG00000087152 E014 2.3649905 0.0060315113 0.067058914 0.26105927 17 44195159 44195293 135 - 0.361 0.627 1.317
ENSG00000087152 E015 19.0768748 0.0019817683 0.352391895 0.64241692 17 44195419 44195442 24 - 1.265 1.329 0.225
ENSG00000087152 E016 21.3713637 0.0082244019 0.907771652 0.97069859 17 44195443 44195487 45 - 1.343 1.352 0.030
ENSG00000087152 E017 17.9227618 0.0071924700 0.850432553 0.94698205 17 44195800 44195828 29 - 1.283 1.268 -0.050
ENSG00000087152 E018 2.8379010 0.1598912363 0.632999952 0.84286432 17 44195829 44195885 57 - 0.523 0.627 0.470
ENSG00000087152 E019 0.6263368 0.0149683459 0.217108076 0.50333163 17 44195886 44196033 148 - 0.100 0.284 1.831
ENSG00000087152 E020 24.6148886 0.0009305191 0.295658254 0.58869829 17 44196034 44196079 46 - 1.439 1.378 -0.212
ENSG00000087152 E021 2.8304821 0.0048957097 0.735683847 0.89515827 17 44196080 44196100 21 - 0.556 0.602 0.210
ENSG00000087152 E022 0.9882333 0.0125978250 0.591358204 0.81929444 17 44196101 44196213 113 - 0.250 0.333 0.568
ENSG00000087152 E023 19.6755507 0.0007146193 0.106149048 0.34102783 17 44196396 44196418 23 - 1.368 1.263 -0.366
ENSG00000087152 E024 15.0333329 0.0029190145 0.212024532 0.49712761 17 44196929 44196940 12 - 1.252 1.158 -0.333
ENSG00000087152 E025 16.9607895 0.0010629530 0.050423021 0.22189256 17 44196941 44196963 23 - 1.322 1.185 -0.481
ENSG00000087152 E026 24.7134498 0.0005818882 0.205725421 0.48911498 17 44196964 44197026 63 - 1.447 1.373 -0.255
ENSG00000087152 E027 47.3115121 0.0002921894 0.505799217 0.76461054 17 44197228 44197399 172 - 1.697 1.669 -0.094
ENSG00000087152 E028 34.4359345 0.0004157427 0.293297065 0.58687705 17 44197598 44197730 133 - 1.517 1.571 0.183
ENSG00000087152 E029 19.0796892 0.0008249690 0.223326300 0.51096087 17 44198020 44198130 111 - 1.343 1.263 -0.280
ENSG00000087152 E030 4.2071431 0.0032432623 0.170804745 0.44308499 17 44198131 44198379 249 - 0.614 0.784 0.706
ENSG00000087152 E031 2.1410524 0.0070302294 0.002010349 0.02565085 17 44198421 44198511 91 - 0.182 0.650 2.738
ENSG00000087152 E032 1.8595829 0.0253724953 0.300846659 0.59381020 17 44199064 44199206 143 - 0.361 0.520 0.831
ENSG00000087152 E033 9.2502444 0.0035186534 0.038484194 0.18962237 17 44199496 44199884 389 - 1.103 0.912 -0.707
ENSG00000087152 E034 0.0000000       17 44200057 44200113 57 -      

Help

Please Click HERE to learn more details about the results from DEXseq.