ENSG00000090006

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000318809 ENSG00000090006 No_inf pgKDN_inf LTBP4 protein_coding retained_intron 19.46611 26.88556 13.3509 5.469344 2.277406 -1.009351 1.6695551 2.0167961 0.0000000 0.6634562 0.0000000 -7.66305713 0.08787500 0.093575 0.000000 -0.093575 0.04518901 0.04518901 FALSE  
ENST00000593463 ENSG00000090006 No_inf pgKDN_inf LTBP4 protein_coding protein_coding 19.46611 26.88556 13.3509 5.469344 2.277406 -1.009351 0.4365985 0.0000000 0.8346204 0.0000000 0.8346204 6.40023117 0.03617500 0.000000 0.076800 0.076800 0.80988779 0.04518901 FALSE  
ENST00000594116 ENSG00000090006 No_inf pgKDN_inf LTBP4 protein_coding retained_intron 19.46611 26.88556 13.3509 5.469344 2.277406 -1.009351 1.0283831 1.8512455 0.0000000 1.8512455 0.0000000 -7.54012453 0.03612500 0.067525 0.000000 -0.067525 0.96055481 0.04518901 FALSE  
ENST00000595118 ENSG00000090006 No_inf pgKDN_inf LTBP4 protein_coding retained_intron 19.46611 26.88556 13.3509 5.469344 2.277406 -1.009351 1.4618688 1.2213593 1.8400818 0.8664482 1.1009681 0.58733732 0.10084167 0.047425 0.138325 0.090900 0.87218206 0.04518901 FALSE  
ENST00000597151 ENSG00000090006 No_inf pgKDN_inf LTBP4 protein_coding retained_intron 19.46611 26.88556 13.3509 5.469344 2.277406 -1.009351 2.8225609 5.0326578 0.0000000 5.0326578 0.0000000 -8.97804051 0.07796667 0.120175 0.000000 -0.120175 0.92497762 0.04518901 FALSE  
ENST00000599225 ENSG00000090006 No_inf pgKDN_inf LTBP4 protein_coding protein_coding 19.46611 26.88556 13.3509 5.469344 2.277406 -1.009351 1.6082766 2.4664356 2.3583943 1.4323691 2.3583943 -0.06435578 0.06759167 0.084075 0.118700 0.034625 0.85814803 0.04518901 FALSE  
MSTRG.15181.18 ENSG00000090006 No_inf pgKDN_inf LTBP4 protein_coding   19.46611 26.88556 13.3509 5.469344 2.277406 -1.009351 1.6354645 0.7835015 2.4537822 0.6271247 0.9848210 1.63456998 0.10897500 0.020300 0.200825 0.180525 0.35147061 0.04518901 FALSE  
MSTRG.15181.21 ENSG00000090006 No_inf pgKDN_inf LTBP4 protein_coding   19.46611 26.88556 13.3509 5.469344 2.277406 -1.009351 3.0127456 5.3597210 1.4126583 0.7932242 1.4126583 -1.91625795 0.16320000 0.234000 0.108750 -0.125250 0.23438169 0.04518901 FALSE  
MSTRG.15181.24 ENSG00000090006 No_inf pgKDN_inf LTBP4 protein_coding   19.46611 26.88556 13.3509 5.469344 2.277406 -1.009351 1.5607564 1.0789276 1.7148861 0.7023244 0.9434970 0.66359313 0.10100833 0.052850 0.164500 0.111650 0.70942092 0.04518901 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000090006 E001 0.0000000       19 40592883 40593165 283 +      
ENSG00000090006 E002 0.0000000       19 40593166 40593181 16 +      
ENSG00000090006 E003 0.0000000       19 40594527 40594553 27 +      
ENSG00000090006 E004 0.1176306 0.0118839871 0.33623455   19 40597235 40597380 146 + 0.115 0.000 -11.341
ENSG00000090006 E005 0.0000000       19 40598525 40598622 98 +      
ENSG00000090006 E006 0.1176306 0.0118839871 0.33623455   19 40599197 40599255 59 + 0.115 0.000 -14.280
ENSG00000090006 E007 0.0000000       19 40599402 40599420 19 +      
ENSG00000090006 E008 0.0000000       19 40599421 40599556 136 +      
ENSG00000090006 E009 0.1272623 0.0124096682 0.87469621   19 40599676 40599983 308 + 0.000 0.078 12.599
ENSG00000090006 E010 0.1272623 0.0124096682 0.87469621   19 40599984 40600067 84 + 0.000 0.078 12.599
ENSG00000090006 E011 0.1170040 0.0116642628 0.33649539   19 40600068 40600103 36 + 0.115 0.000 -14.280
ENSG00000090006 E012 0.1170040 0.0116642628 0.33649539   19 40600104 40600177 74 + 0.115 0.000 -14.280
ENSG00000090006 E013 0.1271363 0.0123555532 0.87472633   19 40601369 40601637 269 + 0.000 0.078 12.599
ENSG00000090006 E014 0.1271363 0.0123555532 0.87472633   19 40605035 40605226 192 + 0.000 0.078 12.599
ENSG00000090006 E015 0.4899121 0.0160940073 0.65468834   19 40605405 40605652 248 + 0.206 0.144 -0.627
ENSG00000090006 E016 0.6246350 0.0156893403 0.37815038 0.66526604 19 40605729 40605831 103 + 0.115 0.252 1.373
ENSG00000090006 E017 0.6145027 0.0246758526 0.96641266 0.99318789 19 40606233 40606307 75 + 0.206 0.202 -0.042
ENSG00000090006 E018 0.3629695 0.0164722879 0.34288299   19 40606404 40606465 62 + 0.206 0.078 -1.627
ENSG00000090006 E019 0.2374063 0.2288062091 0.16154261   19 40606466 40606526 61 + 0.206 0.000 -14.893
ENSG00000090006 E020 0.7453833 0.0138078144 0.77885061 0.91499838 19 40607365 40607529 165 + 0.206 0.252 0.373
ENSG00000090006 E021 1.3709022 0.0096211547 0.42064143 0.69987560 19 40608220 40608369 150 + 0.282 0.411 0.789
ENSG00000090006 E022 0.8884444 0.0385897230 0.02313973 0.13874575 19 40608484 40608603 120 + 0.000 0.376 14.887
ENSG00000090006 E023 0.2539903 0.0161278458 0.44140571   19 40608604 40608921 318 + 0.000 0.144 13.464
ENSG00000090006 E024 0.3719033 0.1686664054 0.96320006   19 40609530 40609661 132 + 0.115 0.144 0.374
ENSG00000090006 E025 0.3801504 0.0393075190 0.22882805   19 40609746 40609871 126 + 0.000 0.202 13.931
ENSG00000090006 E026 0.0000000       19 40610168 40610212 45 +      
ENSG00000090006 E027 0.5080420 0.0156765016 0.11899460 0.36456800 19 40610213 40610531 319 + 0.000 0.252 14.282
ENSG00000090006 E028 1.0150463 0.0121825499 0.01192566 0.09017285 19 40610532 40610657 126 + 0.000 0.411 15.051
ENSG00000090006 E029 0.1271363 0.0123555532 0.87472633   19 40610765 40610911 147 + 0.000 0.078 12.599
ENSG00000090006 E030 0.8796353 0.0172601831 0.15938189 0.42677504 19 40611152 40611373 222 + 0.115 0.339 1.959
ENSG00000090006 E031 0.4901058 0.0157087092 0.65633010   19 40611374 40611394 21 + 0.206 0.144 -0.627
ENSG00000090006 E032 0.9882337 0.0113830647 0.93213624 0.98026432 19 40611859 40611910 52 + 0.282 0.298 0.110
ENSG00000090006 E033 0.6168311 0.0145097405 0.96334897 0.99228699 19 40611911 40611976 66 + 0.206 0.202 -0.042
ENSG00000090006 E034 0.1271363 0.0123555532 0.87472633   19 40611977 40611984 8 + 0.000 0.078 12.599
ENSG00000090006 E035 0.9958167 0.0188500093 0.40975334 0.69191874 19 40612073 40612192 120 + 0.206 0.339 0.958
ENSG00000090006 E036 0.8784043 0.0140253476 0.15797509 0.42473722 19 40613065 40613134 70 + 0.115 0.339 1.958
ENSG00000090006 E037 0.7521182 0.0145875460 0.24525370 0.53570036 19 40613135 40613196 62 + 0.115 0.298 1.695
ENSG00000090006 E038 0.0000000       19 40613373 40613374 2 +      
ENSG00000090006 E039 0.2455571 0.0165633554 0.72695392   19 40613375 40613403 29 + 0.115 0.078 -0.627
ENSG00000090006 E040 0.8610360 0.0673299257 0.84150822 0.94310332 19 40613404 40613413 10 + 0.282 0.252 -0.211
ENSG00000090006 E041 0.8610360 0.0673299257 0.84150822 0.94310332 19 40613414 40613415 2 + 0.282 0.252 -0.211
ENSG00000090006 E042 1.8502474 0.0079139241 0.93877227 0.98233556 19 40613416 40613447 32 + 0.451 0.443 -0.042
ENSG00000090006 E043 1.5976120 0.0444323610 0.63979993 0.84687992 19 40613448 40613455 8 + 0.451 0.376 -0.404
ENSG00000090006 E044 2.8580915 0.0257169008 0.41005587 0.69214671 19 40613456 40613529 74 + 0.495 0.618 0.566
ENSG00000090006 E045 1.1240287 0.0356843156 0.29626910 0.58930399 19 40613530 40613595 66 + 0.206 0.376 1.181
ENSG00000090006 E046 0.9905930 0.0126597601 0.93436104 0.98106717 19 40613596 40613717 122 + 0.282 0.298 0.110
ENSG00000090006 E047 3.0589729 0.1422378603 0.37497077 0.66261504 19 40613718 40613915 198 + 0.695 0.527 -0.742
ENSG00000090006 E048 6.6739578 0.0867428898 0.89427557 0.96500387 19 40613916 40614038 123 + 0.869 0.875 0.025
ENSG00000090006 E049 0.0000000       19 40614111 40614141 31 +      
ENSG00000090006 E050 0.0000000       19 40614142 40614143 2 +      
ENSG00000090006 E051 0.0000000       19 40614144 40614175 32 +      
ENSG00000090006 E052 0.0000000       19 40614176 40614179 4 +      
ENSG00000090006 E053 0.0000000       19 40614180 40614191 12 +      
ENSG00000090006 E054 1.1326493 0.0107296202 0.06454420 0.25603557 19 40614192 40614314 123 + 0.115 0.411 2.373
ENSG00000090006 E055 7.8470267 0.0026148390 0.12548421 0.37548524 19 40614315 40614446 132 + 1.018 0.875 -0.536
ENSG00000090006 E056 0.0000000       19 40615338 40615377 40 +      
ENSG00000090006 E057 2.6848119 0.0090449450 0.14862355 0.41062767 19 40616889 40616909 21 + 0.667 0.473 -0.890
ENSG00000090006 E058 4.8816162 0.0045677578 0.04205109 0.19955858 19 40616910 40617020 111 + 0.886 0.658 -0.916
ENSG00000090006 E059 0.0000000       19 40617021 40617042 22 +      
ENSG00000090006 E060 0.1268540 0.0125300719 0.87457589   19 40617043 40617099 57 + 0.000 0.078 12.599
ENSG00000090006 E061 4.4278083 0.0041385721 0.50636970 0.76512980 19 40617100 40617225 126 + 0.768 0.694 -0.305
ENSG00000090006 E062 10.5236322 0.0017207173 0.34663571 0.63730868 19 40619347 40619493 147 + 0.992 1.080 0.323
ENSG00000090006 E063 0.3806233 0.0161151837 0.22427680   19 40622388 40622400 13 + 0.000 0.202 13.948
ENSG00000090006 E064 15.3212623 0.0012471222 0.65770962 0.85687375 19 40622401 40622667 267 + 1.176 1.214 0.135
ENSG00000090006 E065 0.3714000 0.0168315873 0.91594966   19 40622905 40622949 45 + 0.115 0.144 0.373
ENSG00000090006 E066 6.4894734 0.0023516764 0.01442806 0.10234946 19 40622950 40623021 72 + 0.667 0.948 1.110
ENSG00000090006 E067 10.2514806 0.0018663249 0.75538240 0.90358940 19 40623604 40623732 129 + 1.018 1.051 0.120
ENSG00000090006 E068 0.7524006 0.0191928213 0.24763537 0.53835165 19 40623733 40623905 173 + 0.115 0.298 1.695
ENSG00000090006 E069 0.9805185 0.0773666957 0.53502990 0.78487048 19 40623906 40623935 30 + 0.346 0.252 -0.627
ENSG00000090006 E070 5.8542426 0.0857349485 0.10509491 0.33904375 19 40623936 40623961 26 + 0.949 0.727 -0.867
ENSG00000090006 E071 8.7310515 0.0016987556 0.41666905 0.69650173 19 40623962 40624082 121 + 1.018 0.948 -0.259
ENSG00000090006 E072 10.7604467 0.0015669056 0.67461735 0.86527497 19 40625857 40626009 153 + 1.031 1.073 0.155
ENSG00000090006 E073 17.1134680 0.0008731065 0.29769581 0.59080498 19 40626975 40627193 219 + 1.284 1.219 -0.230
ENSG00000090006 E074 8.2989818 0.0075512498 0.45496085 0.72765982 19 40627194 40627249 56 + 0.903 0.985 0.310
ENSG00000090006 E075 4.8435829 0.0081248831 0.30033289 0.59321517 19 40627250 40627258 9 + 0.667 0.801 0.544
ENSG00000090006 E076 8.8810986 0.0017483042 0.81564336 0.93256400 19 40627259 40627355 97 + 0.992 0.976 -0.058
ENSG00000090006 E077 5.2789500 0.0126890766 0.32917050 0.62162051 19 40627705 40627736 32 + 0.850 0.743 -0.425
ENSG00000090006 E078 11.8453119 0.0608554986 0.69351821 0.87480906 19 40627737 40627857 121 + 1.109 1.087 -0.079
ENSG00000090006 E079 0.0000000       19 40629363 40629395 33 +      
ENSG00000090006 E080 20.4711719 0.0097892338 0.71913716 0.88680749 19 40629396 40629818 423 + 1.330 1.312 -0.063

Help

Please Click HERE to learn more details about the results from DEXseq.