ENSG00000090060

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000216277 ENSG00000090060 No_inf pgKDN_inf PAPOLA protein_coding protein_coding 83.35305 78.13345 99.06308 1.29513 5.895812 0.3423682 46.374635 32.220726 57.2895760 2.6062714 3.9093433 0.8300878 0.55738333 0.411125 0.580450 0.169325 6.577426e-02 2.459518e-08 FALSE TRUE
ENST00000553461 ENSG00000090060 No_inf pgKDN_inf PAPOLA protein_coding protein_coding 83.35305 78.13345 99.06308 1.29513 5.895812 0.3423682 4.726913 6.733790 4.0658866 0.9230311 1.4804854 -0.7264457 0.05692500 0.085850 0.039450 -0.046400 5.678274e-01 2.459518e-08 FALSE FALSE
ENST00000553940 ENSG00000090060 No_inf pgKDN_inf PAPOLA protein_coding retained_intron 83.35305 78.13345 99.06308 1.29513 5.895812 0.3423682 5.822941 17.179173 0.2896512 1.7513699 0.2896512 -5.8420720 0.07462500 0.220775 0.003100 -0.217675 2.459518e-08 2.459518e-08   FALSE
ENST00000556459 ENSG00000090060 No_inf pgKDN_inf PAPOLA protein_coding protein_coding 83.35305 78.13345 99.06308 1.29513 5.895812 0.3423682 6.465386 5.861702 9.6147905 0.8670226 1.9967362 0.7129763 0.07505000 0.075175 0.096550 0.021375 8.488405e-01 2.459518e-08 FALSE TRUE
ENST00000557320 ENSG00000090060 No_inf pgKDN_inf PAPOLA protein_coding protein_coding 83.35305 78.13345 99.06308 1.29513 5.895812 0.3423682 4.091899 4.772331 4.1045097 0.2204646 0.6161905 -0.2169936 0.05001667 0.061025 0.042325 -0.018700 7.537321e-01 2.459518e-08 FALSE TRUE
MSTRG.9035.2 ENSG00000090060 No_inf pgKDN_inf PAPOLA protein_coding   83.35305 78.13345 99.06308 1.29513 5.895812 0.3423682 5.606369 2.075726 8.5214029 1.3448292 3.0833866 2.0322332 0.06846667 0.026825 0.091675 0.064850 4.646019e-01 2.459518e-08 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000090060 E001 0.0000000       14 96501433 96501589 157 +      
ENSG00000090060 E002 0.1265070 0.0123061433 4.061086e-01   14 96502376 96502381 6 + 0.000 0.109 9.557
ENSG00000090060 E003 1.2132977 0.0106924252 8.433377e-01 0.9439963882 14 96502382 96502397 16 + 0.354 0.330 -0.146
ENSG00000090060 E004 1.5845716 0.0132826214 8.284737e-01 0.9379127866 14 96502398 96502400 3 + 0.393 0.433 0.217
ENSG00000090060 E005 2.1832483 0.0064321701 7.184546e-01 0.8867151992 14 96502401 96502411 11 + 0.520 0.476 -0.213
ENSG00000090060 E006 8.9304041 0.0015884271 2.941784e-01 0.5875479947 14 96502412 96502440 29 + 0.943 1.051 0.399
ENSG00000090060 E007 23.3968200 0.0005852877 5.394130e-02 0.2310411287 14 96502441 96502541 101 + 1.429 1.321 -0.374
ENSG00000090060 E008 13.2343930 0.0010216482 2.459781e-01 0.5366580335 14 96502542 96502557 16 + 1.185 1.103 -0.291
ENSG00000090060 E009 26.1298862 0.0033770881 3.844483e-01 0.6705977879 14 96502558 96502600 43 + 1.449 1.407 -0.146
ENSG00000090060 E010 0.1268540 0.0124232505 4.060134e-01   14 96502851 96502954 104 + 0.000 0.109 11.811
ENSG00000090060 E011 0.2438580 0.0165010188 8.298631e-01   14 96504289 96504699 411 + 0.083 0.109 0.439
ENSG00000090060 E012 82.1602647 0.0002461856 7.738586e-02 0.2845659557 14 96520055 96520228 174 + 1.937 1.890 -0.159
ENSG00000090060 E013 0.2340080 0.2866161877 4.231552e-01   14 96520964 96521005 42 + 0.152 0.000 -11.962
ENSG00000090060 E014 27.4032706 0.0041115325 6.991063e-01 0.8774050287 14 96521006 96521015 10 + 1.455 1.444 -0.040
ENSG00000090060 E015 40.5272741 0.0030061002 4.989312e-01 0.7592565316 14 96521016 96521062 47 + 1.625 1.603 -0.078
ENSG00000090060 E016 28.2925279 0.0020260992 1.441271e-01 0.4043500124 14 96521063 96521072 10 + 1.495 1.421 -0.255
ENSG00000090060 E017 48.2929560 0.0002900118 1.597783e-02 0.1096479532 14 96525310 96525391 82 + 1.729 1.635 -0.318
ENSG00000090060 E018 0.7526224 0.0147528316 4.523803e-02 0.2079137720 14 96525981 96527429 1449 + 0.083 0.385 2.761
ENSG00000090060 E019 31.3717315 0.0074160949 2.865880e-01 0.5801244902 14 96527430 96527441 12 + 1.532 1.474 -0.198
ENSG00000090060 E020 62.6994392 0.0024383325 3.081013e-03 0.0351908853 14 96527442 96527539 98 + 1.849 1.732 -0.393
ENSG00000090060 E021 0.3707734 0.0165540709 4.268563e-01   14 96527540 96527952 413 + 0.083 0.196 1.439
ENSG00000090060 E022 52.9729463 0.0002656539 7.924568e-02 0.2886923878 14 96527953 96528006 54 + 1.755 1.694 -0.207
ENSG00000090060 E023 75.1432553 0.0002340098 6.731362e-01 0.8646266355 14 96531475 96531586 112 + 1.880 1.877 -0.009
ENSG00000090060 E024 1.7083423 0.1377311849 9.828636e-01 0.9986902635 14 96531587 96532248 662 + 0.429 0.433 0.023
ENSG00000090060 E025 58.2496425 0.0002707506 2.076993e-01 0.4913396453 14 96532331 96532420 90 + 1.786 1.748 -0.129
ENSG00000090060 E026 63.3763764 0.0002900381 2.980731e-01 0.5910811782 14 96532511 96532649 139 + 1.818 1.790 -0.093
ENSG00000090060 E027 36.8586706 0.0028926250 1.571614e-04 0.0034247843 14 96532650 96534222 1573 + 1.468 1.681 0.728
ENSG00000090060 E028 10.0053397 0.0013920223 8.895877e-04 0.0137200523 14 96534223 96534490 268 + 0.876 1.183 1.128
ENSG00000090060 E029 33.6547617 0.0004149092 8.139161e-01 0.9319523597 14 96534491 96534563 73 + 1.526 1.550 0.082
ENSG00000090060 E030 12.3492999 0.0010949927 3.858048e-04 0.0070896069 14 96534564 96534889 326 + 0.964 1.264 1.084
ENSG00000090060 E031 3.0241997 0.0050837516 2.606702e-01 0.5532016781 14 96535525 96535878 354 + 0.660 0.516 -0.649
ENSG00000090060 E032 36.2586508 0.0003875099 1.932943e-02 0.1242174545 14 96535879 96535999 121 + 1.612 1.506 -0.363
ENSG00000090060 E033 0.4879983 0.1163181240 7.835944e-01   14 96536895 96536975 81 + 0.152 0.196 0.440
ENSG00000090060 E034 31.9505873 0.0004373545 2.847620e-03 0.0332072492 14 96536976 96537060 85 + 1.575 1.426 -0.512
ENSG00000090060 E035 10.0005810 0.0014122058 8.944553e-04 0.0137714968 14 96537061 96537901 841 + 0.876 1.183 1.128
ENSG00000090060 E036 3.3469288 0.0044152255 1.520093e-02 0.1061290286 14 96541907 96542181 275 + 0.461 0.787 1.439
ENSG00000090060 E037 1.1061164 0.0131254589 4.618125e-01 0.7323550946 14 96542182 96542242 61 + 0.265 0.385 0.761
ENSG00000090060 E038 29.2601821 0.0080831755 2.062810e-01 0.4898969779 14 96542243 96542296 54 + 1.510 1.435 -0.257
ENSG00000090060 E039 2.7229224 0.0105303135 5.994246e-02 0.2456362084 14 96542297 96542728 432 + 0.428 0.698 1.246
ENSG00000090060 E040 1.7419585 0.0078613790 3.457900e-02 0.1776866605 14 96542729 96542773 45 + 0.265 0.585 1.761
ENSG00000090060 E041 50.4462411 0.0058149496 3.022735e-01 0.5954145345 14 96542774 96542893 120 + 1.727 1.684 -0.146
ENSG00000090060 E042 47.7942581 0.0005023850 2.864665e-01 0.5800471163 14 96544149 96544258 110 + 1.701 1.666 -0.119
ENSG00000090060 E043 0.1176306 0.0117681665 7.088569e-01   14 96547688 96547796 109 + 0.083 0.000 -12.024
ENSG00000090060 E044 41.9333815 0.0003827469 1.992334e-01 0.4808899974 14 96547797 96547895 99 + 1.651 1.603 -0.164
ENSG00000090060 E045 21.9158217 0.0017533295 2.658235e-02 0.1511377464 14 96547896 96547918 23 + 1.412 1.278 -0.467
ENSG00000090060 E046 44.4753220 0.0003181250 2.674003e-03 0.0316409970 14 96552480 96552622 143 + 1.706 1.580 -0.428
ENSG00000090060 E047 2.5944567 0.1264730754 1.903261e-01 0.4694096488 14 96552623 96553532 910 + 0.429 0.672 1.138
ENSG00000090060 E048 12.5324143 0.0057972160 6.496437e-01 0.8523787511 14 96555847 96555849 3 + 1.141 1.113 -0.100
ENSG00000090060 E049 34.3745591 0.0105680292 9.002968e-01 0.9676132376 14 96555850 96555947 98 + 1.537 1.557 0.068
ENSG00000090060 E050 0.2372762 0.2908058985 4.241965e-01   14 96555948 96555950 3 + 0.153 0.000 -11.959
ENSG00000090060 E051 79.3252374 0.0048507272 3.431985e-01 0.6344242793 14 96556175 96556413 239 + 1.915 1.885 -0.098
ENSG00000090060 E052 1.3619956 0.0094263918 1.772222e-01 0.4517781597 14 96560438 96560648 211 + 0.265 0.476 1.246
ENSG00000090060 E053 37.6366692 0.0006334243 1.373896e-01 0.3945478312 14 96560649 96560711 63 + 1.545 1.629 0.289
ENSG00000090060 E054 0.9702949 0.0117761856 7.491850e-01 0.9011673450 14 96562458 96562818 361 + 0.312 0.268 -0.298
ENSG00000090060 E055 44.5747340 0.0003291484 1.870682e-01 0.4649250326 14 96562819 96562893 75 + 1.623 1.694 0.241
ENSG00000090060 E056 749.8732332 0.0013407632 9.806755e-06 0.0003345462 14 96564955 96567116 2162 + 2.840 2.910 0.234

Help

Please Click HERE to learn more details about the results from DEXseq.