ENSG00000090565

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000262305 ENSG00000090565 No_inf pgKDN_inf RAB11FIP3 protein_coding protein_coding 12.39342 18.82024 8.445861 1.629169 0.569671 -1.155028 1.5040076 1.5233342 1.4951063 0.2358705 0.4821703 -0.02680673 0.14230000 0.081600 0.184625 0.103025 0.67663355 0.04941986 FALSE TRUE
ENST00000412256 ENSG00000090565 No_inf pgKDN_inf RAB11FIP3 protein_coding protein_coding 12.39342 18.82024 8.445861 1.629169 0.569671 -1.155028 1.4023695 3.7727808 0.4343278 0.9205863 0.4343278 -3.08975101 0.07955000 0.194650 0.044000 -0.150650 0.20951313 0.04941986 FALSE TRUE
ENST00000434585 ENSG00000090565 No_inf pgKDN_inf RAB11FIP3 protein_coding protein_coding 12.39342 18.82024 8.445861 1.629169 0.569671 -1.155028 1.1444059 0.8441956 0.9620461 0.5104121 0.5562523 0.18645818 0.11190000 0.047200 0.115125 0.067925 0.86922283 0.04941986 FALSE TRUE
ENST00000450428 ENSG00000090565 No_inf pgKDN_inf RAB11FIP3 protein_coding protein_coding 12.39342 18.82024 8.445861 1.629169 0.569671 -1.155028 0.7040625 0.8979640 0.8086553 0.6518598 0.8086553 -0.14937895 0.06013333 0.053075 0.093250 0.040175 0.95405470 0.04941986 FALSE TRUE
ENST00000487899 ENSG00000090565 No_inf pgKDN_inf RAB11FIP3 protein_coding retained_intron 12.39342 18.82024 8.445861 1.629169 0.569671 -1.155028 2.1927306 4.1343380 1.2448820 0.7403352 0.5595803 -1.72359003 0.16045000 0.218050 0.146350 -0.071700 0.80323720 0.04941986 FALSE FALSE
ENST00000495663 ENSG00000090565 No_inf pgKDN_inf RAB11FIP3 protein_coding retained_intron 12.39342 18.82024 8.445861 1.629169 0.569671 -1.155028 0.7445096 1.4585668 0.0000000 0.3886152 0.0000000 -7.19826505 0.04954167 0.076025 0.000000 -0.076025 0.04941986 0.04941986   FALSE
MSTRG.10347.11 ENSG00000090565 No_inf pgKDN_inf RAB11FIP3 protein_coding   12.39342 18.82024 8.445861 1.629169 0.569671 -1.155028 3.1115667 5.2082700 1.7328751 0.8788381 0.5901533 -1.58210238 0.24546667 0.275675 0.207825 -0.067850 0.83741621 0.04941986 FALSE TRUE
MSTRG.10347.3 ENSG00000090565 No_inf pgKDN_inf RAB11FIP3 protein_coding   12.39342 18.82024 8.445861 1.629169 0.569671 -1.155028 1.1851104 0.6239780 1.7679680 0.6239780 0.6814037 1.48772465 0.11841667 0.038450 0.208875 0.170425 0.28166179 0.04941986 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000090565 E001 2.5475343 0.0070147560 0.02304733 0.13851513 16 425649 426006 358 + 0.711 0.398 -1.464
ENSG00000090565 E002 4.2791098 0.0033487367 0.08647375 0.30470895 16 426007 426477 471 + 0.829 0.623 -0.846
ENSG00000090565 E003 4.7825662 0.0452083342 0.20984616 0.49427212 16 426478 426720 243 + 0.849 0.677 -0.690
ENSG00000090565 E004 3.7910220 0.0039081072 0.10339835 0.33614884 16 461404 461497 94 + 0.785 0.582 -0.856
ENSG00000090565 E005 4.1786559 0.0044435395 0.40579726 0.68844231 16 471295 471389 95 + 0.762 0.660 -0.422
ENSG00000090565 E006 0.0000000       16 474850 474868 19 +      
ENSG00000090565 E007 0.1271363 0.0126103007 1.00000000   16 474869 474923 55 + 0.000 0.075 10.363
ENSG00000090565 E008 0.2543986 0.0162736438 0.48278175   16 474924 475045 122 + 0.000 0.139 11.289
ENSG00000090565 E009 0.2541163 0.0160761897 0.48337770   16 475046 475098 53 + 0.000 0.139 11.289
ENSG00000090565 E010 5.2870113 0.0190752166 0.36973037 0.65794634 16 482525 482656 132 + 0.849 0.741 -0.426
ENSG00000090565 E011 4.4166661 0.0566516966 0.22694471 0.51518297 16 482657 482736 80 + 0.829 0.642 -0.764
ENSG00000090565 E012 5.7734717 0.0314763722 0.24347736 0.53348397 16 488851 488941 91 + 0.904 0.756 -0.579
ENSG00000090565 E013 4.6978807 0.0030268471 0.96856966 0.99364123 16 488942 489000 59 + 0.738 0.741 0.014
ENSG00000090565 E014 0.0000000       16 489001 489101 101 +      
ENSG00000090565 E015 3.5955125 0.0498708926 0.73065883 0.89298331 16 491134 491268 135 + 0.622 0.660 0.162
ENSG00000090565 E016 3.8097240 0.0781688510 0.51323337 0.77016596 16 496824 496859 36 + 0.738 0.623 -0.484
ENSG00000090565 E017 1.5153454 0.0101310742 0.02268657 0.13715697 16 496860 497158 299 + 0.120 0.487 2.696
ENSG00000090565 E018 2.6018587 0.0057710358 0.71885871 0.88680068 16 497292 497448 157 + 0.509 0.560 0.237
ENSG00000090565 E019 0.6261768 0.0395296025 0.43192567 0.70949207 16 498915 498946 32 + 0.120 0.243 1.237
ENSG00000090565 E020 3.0002658 0.0085056548 0.08851087 0.30862072 16 502750 503003 254 + 0.414 0.660 1.163
ENSG00000090565 E021 4.0675536 0.0930076606 0.82988449 0.93834361 16 503004 503097 94 + 0.711 0.677 -0.141
ENSG00000090565 E022 0.2352613 0.3259090910 0.15989819   16 503311 503350 40 + 0.214 0.000 -12.711
ENSG00000090565 E023 7.1610160 0.0020366837 0.89948592 0.96724696 16 505524 505627 104 + 0.904 0.890 -0.053
ENSG00000090565 E024 0.0000000       16 510453 510562 110 +      
ENSG00000090565 E025 0.0000000       16 510563 510659 97 +      
ENSG00000090565 E026 10.0315262 0.0015908092 0.62839167 0.84037979 16 510660 510800 141 + 0.997 1.040 0.157
ENSG00000090565 E027 7.0164090 0.0025260075 0.43900194 0.71504624 16 518943 519024 82 + 0.937 0.857 -0.304
ENSG00000090565 E028 0.2541163 0.0160761897 0.48337770   16 519025 519108 84 + 0.000 0.139 11.289
ENSG00000090565 E029 9.7520117 0.0014901974 0.69498502 0.87538515 16 519754 519891 138 + 1.037 1.001 -0.132
ENSG00000090565 E030 8.4955371 0.0019960080 0.40034468 0.68382782 16 520122 520277 156 + 1.011 0.930 -0.299
ENSG00000090565 E031 11.0638591 0.0133178900 0.14786560 0.40940979 16 520459 520599 141 + 0.968 1.108 0.514
ENSG00000090565 E032 86.3831333 0.0002491929 0.01027159 0.08169176 16 520726 523283 2558 + 1.879 1.944 0.221

Help

Please Click HERE to learn more details about the results from DEXseq.