ENSG00000092108

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000458591 ENSG00000092108 No_inf pgKDN_inf SCFD1 protein_coding protein_coding 24.56818 13.23082 34.25116 0.6203426 3.450824 1.371582 2.954528 3.3381992 2.519996 1.1510391 1.498766 -0.4042503 0.16779167 0.261650 0.089875 -0.171775 0.63429282 0.03437707 FALSE TRUE
ENST00000554776 ENSG00000092108 No_inf pgKDN_inf SCFD1 protein_coding nonsense_mediated_decay 24.56818 13.23082 34.25116 0.6203426 3.450824 1.371582 2.810923 0.0000000 8.432769 0.0000000 3.588095 9.7215725 0.07640000 0.000000 0.229200 0.229200 0.03437707 0.03437707 TRUE FALSE
ENST00000554819 ENSG00000092108 No_inf pgKDN_inf SCFD1 protein_coding protein_coding_CDS_not_defined 24.56818 13.23082 34.25116 0.6203426 3.450824 1.371582 4.689243 0.0000000 7.102456 0.0000000 4.550553 9.4742041 0.13912500 0.000000 0.203900 0.203900 0.65557004 0.03437707 FALSE FALSE
ENST00000555259 ENSG00000092108 No_inf pgKDN_inf SCFD1 protein_coding nonsense_mediated_decay 24.56818 13.23082 34.25116 0.6203426 3.450824 1.371582 7.189703 5.4413460 8.293782 0.4045776 1.768780 0.6071562 0.33337500 0.409975 0.259450 -0.150525 0.51844523 0.03437707 FALSE TRUE
ENST00000677637 ENSG00000092108 No_inf pgKDN_inf SCFD1 protein_coding nonsense_mediated_decay 24.56818 13.23082 34.25116 0.6203426 3.450824 1.371582 0.299548 0.8986441 0.000000 0.8986441 0.000000 -6.5056434 0.02031667 0.060950 0.000000 -0.060950 0.77064181 0.03437707 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000092108 E001 0.0000000       14 30622291 30622295 5 +      
ENSG00000092108 E002 0.0000000       14 30622296 30622303 8 +      
ENSG00000092108 E003 0.1170040 0.0117008930 0.710341251   14 30622304 30622310 7 + 0.084 0.000 -12.284
ENSG00000092108 E004 0.1170040 0.0117008930 0.710341251   14 30622311 30622311 1 + 0.084 0.000 -12.283
ENSG00000092108 E005 0.1170040 0.0117008930 0.710341251   14 30622312 30622314 3 + 0.084 0.000 -12.283
ENSG00000092108 E006 0.1170040 0.0117008930 0.710341251   14 30622315 30622316 2 + 0.084 0.000 -12.283
ENSG00000092108 E007 0.1170040 0.0117008930 0.710341251   14 30622317 30622318 2 + 0.084 0.000 -12.283
ENSG00000092108 E008 0.1170040 0.0117008930 0.710341251   14 30622319 30622319 1 + 0.084 0.000 -12.283
ENSG00000092108 E009 0.1170040 0.0117008930 0.710341251   14 30622320 30622321 2 + 0.084 0.000 -12.283
ENSG00000092108 E010 0.3617709 0.0166136470 0.771574432   14 30622322 30622326 5 + 0.154 0.108 -0.597
ENSG00000092108 E011 0.4804091 0.0153208286 0.472069271   14 30622327 30622328 2 + 0.214 0.108 -1.182
ENSG00000092108 E012 0.4804091 0.0153208286 0.472069271   14 30622329 30622329 1 + 0.214 0.108 -1.182
ENSG00000092108 E013 0.5990472 0.0149750198 0.288623734 0.58217771 14 30622330 30622331 2 + 0.267 0.108 -1.597
ENSG00000092108 E014 0.8363884 0.0129895716 0.106055667 0.34102783 14 30622332 30622338 7 + 0.357 0.108 -2.182
ENSG00000092108 E015 4.6937484 0.0104253268 0.029567853 0.16162474 14 30622339 30622399 61 + 0.856 0.581 -1.133
ENSG00000092108 E016 0.2346346 0.0156436759 0.353716933   14 30622400 30622462 63 + 0.154 0.000 -13.283
ENSG00000092108 E017 0.3722815 0.0166557669 0.424607823   14 30627890 30628208 319 + 0.084 0.194 1.403
ENSG00000092108 E018 6.3110242 0.0410383213 0.449043482 0.72293546 14 30628209 30628279 71 + 0.904 0.803 -0.393
ENSG00000092108 E019 11.6716918 0.0277846479 0.894350173 0.96502983 14 30630477 30630565 89 + 1.111 1.088 -0.081
ENSG00000092108 E020 0.2459655 0.0164444311 0.828836731   14 30630566 30630917 352 + 0.084 0.108 0.403
ENSG00000092108 E021 0.0000000       14 30633930 30633946 17 +      
ENSG00000092108 E022 16.7018273 0.0208976585 0.171111577 0.44346521 14 30633947 30634037 91 + 1.300 1.170 -0.457
ENSG00000092108 E023 0.0000000       14 30634038 30634794 757 +      
ENSG00000092108 E024 0.0000000       14 30634795 30634921 127 +      
ENSG00000092108 E025 0.0000000       14 30634922 30635034 113 +      
ENSG00000092108 E026 0.0000000       14 30635035 30635176 142 +      
ENSG00000092108 E027 0.0000000       14 30638107 30638124 18 +      
ENSG00000092108 E028 12.3843459 0.0088987412 0.467026030 0.73559770 14 30638125 30638183 59 + 1.152 1.088 -0.229
ENSG00000092108 E029 8.0239608 0.0026296634 0.725895117 0.89016683 14 30638184 30638196 13 + 0.969 0.934 -0.127
ENSG00000092108 E030 9.7836047 0.0015306480 0.307886048 0.60119207 14 30638197 30638247 51 + 0.988 1.078 0.331
ENSG00000092108 E031 14.7648428 0.0018397897 0.729832503 0.89244762 14 30639777 30639864 88 + 1.184 1.209 0.092
ENSG00000092108 E032 14.5949093 0.0046027924 0.518203958 0.77344606 14 30643316 30643405 90 + 1.213 1.162 -0.182
ENSG00000092108 E033 0.4982566 0.0152999248 0.202946343   14 30643880 30644018 139 + 0.084 0.266 1.988
ENSG00000092108 E034 10.0647170 0.0017783931 0.293869180 0.58730886 14 30649528 30649583 56 + 1.082 0.988 -0.343
ENSG00000092108 E035 13.7531347 0.0011174645 0.006648235 0.06081512 14 30650565 30650650 86 + 1.251 1.035 -0.771
ENSG00000092108 E036 0.0000000       14 30652338 30652372 35 +      
ENSG00000092108 E037 17.4038553 0.0018851024 0.011281316 0.08707019 14 30653489 30653588 100 + 1.335 1.153 -0.642
ENSG00000092108 E038 0.1268540 0.0123432885 0.404886831   14 30653589 30653981 393 + 0.000 0.108 12.983
ENSG00000092108 E039 2.5497069 0.0053781336 0.647800349 0.85124413 14 30658083 30661939 3857 + 0.576 0.512 -0.297
ENSG00000092108 E040 0.1271363 0.0123934434 0.404829733   14 30669763 30670255 493 + 0.000 0.108 12.983
ENSG00000092108 E041 22.0545506 0.0006180959 0.040764902 0.19592000 14 30670256 30670395 140 + 1.413 1.285 -0.445
ENSG00000092108 E042 0.3812526 0.0158828437 0.059597068   14 30673235 30673256 22 + 0.000 0.266 14.568
ENSG00000092108 E043 13.8334714 0.0010368010 0.175535404 0.44961246 14 30673257 30673347 91 + 1.213 1.108 -0.374
ENSG00000092108 E044 0.1265070 0.0123303585 0.404876973   14 30673348 30673923 576 + 0.000 0.108 12.983
ENSG00000092108 E045 6.2024405 0.0103207550 0.594644680 0.82176222 14 30673924 30673930 7 + 0.881 0.821 -0.229
ENSG00000092108 E046 15.6271941 0.0046712403 0.621402077 0.83668781 14 30673931 30673997 67 + 1.201 1.239 0.132
ENSG00000092108 E047 17.5016252 0.0300888875 0.338094338 0.62994812 14 30674984 30675065 82 + 1.219 1.316 0.342
ENSG00000092108 E048 1.9677457 0.0079944768 0.296658886 0.58981828 14 30675066 30676125 1060 + 0.396 0.548 0.766
ENSG00000092108 E049 0.4894115 0.0158308017 0.781603626   14 30676126 30676633 508 + 0.154 0.194 0.403
ENSG00000092108 E050 0.2356421 0.0156724936 0.353711846   14 30676634 30676783 150 + 0.154 0.000 -13.283
ENSG00000092108 E051 0.1265070 0.0123303585 0.404876973   14 30676784 30676855 72 + 0.000 0.108 12.983
ENSG00000092108 E052 1.3611142 0.0093496785 0.175255542 0.44931466 14 30693187 30694772 1586 + 0.267 0.473 1.211
ENSG00000092108 E053 16.8311356 0.0008620181 0.785708989 0.91748370 14 30694773 30694869 97 + 1.240 1.259 0.067
ENSG00000092108 E054 0.0000000       14 30694870 30695867 998 +      
ENSG00000092108 E055 7.9088160 0.0017328220 0.804726634 0.92770288 14 30700188 30700190 3 + 0.958 0.934 -0.090
ENSG00000092108 E056 14.5417929 0.0010656413 0.379483228 0.66621602 14 30700191 30700258 68 + 1.159 1.224 0.233
ENSG00000092108 E057 3.3028913 0.0060631743 0.601777075 0.82583763 14 30700259 30702295 2037 + 0.600 0.668 0.296
ENSG00000092108 E058 17.0522700 0.0008253750 0.037335033 0.18606798 14 30702296 30702375 80 + 1.184 1.328 0.507
ENSG00000092108 E059 15.6216169 0.0162444425 0.779429868 0.91499838 14 30705823 30705885 63 + 1.207 1.232 0.086
ENSG00000092108 E060 3.0873977 0.0050629861 0.093339317 0.31760144 14 30705886 30707816 1931 + 0.495 0.718 0.988
ENSG00000092108 E061 0.3550369 0.0400061928 0.172930462   14 30707817 30707876 60 + 0.214 0.000 -13.868
ENSG00000092108 E062 0.3719033 0.2442262027 0.483254763   14 30707877 30707914 38 + 0.084 0.194 1.404
ENSG00000092108 E063 0.8428717 0.1518364577 0.486163535 0.74997838 14 30707915 30707989 75 + 0.315 0.194 -0.918
ENSG00000092108 E064 16.8719307 0.0130913240 0.417627081 0.69734672 14 30707990 30708065 76 + 1.219 1.285 0.235
ENSG00000092108 E065 8.1782888 0.0017910662 0.598049173 0.82376096 14 30708066 30710174 2109 + 0.938 0.988 0.187
ENSG00000092108 E066 4.2105408 0.0217029665 0.020162543 0.12767954 14 30714649 30715297 649 + 0.551 0.857 1.278
ENSG00000092108 E067 3.3157029 0.0172060540 0.213573699 0.49873848 14 30715298 30715808 511 + 0.551 0.718 0.725
ENSG00000092108 E068 1.8302626 0.0338620389 0.792583626 0.92085782 14 30715809 30715923 115 + 0.432 0.473 0.210
ENSG00000092108 E069 15.2780822 0.0064705868 0.297504551 0.59060698 14 30715924 30715977 54 + 1.171 1.253 0.288
ENSG00000092108 E070 2.4512688 0.0931286325 0.643178375 0.84869546 14 30715978 30719324 3347 + 0.495 0.582 0.403
ENSG00000092108 E071 15.7204473 0.0008883152 0.935403802 0.98147303 14 30719325 30719377 53 + 1.218 1.224 0.021
ENSG00000092108 E072 1.1093612 0.0293682324 0.465972060 0.73486760 14 30720025 30721694 1670 + 0.268 0.382 0.725
ENSG00000092108 E073 0.1187032 0.0119138941 0.710196591   14 30721695 30721701 7 + 0.084 0.000 -12.283
ENSG00000092108 E074 0.1187032 0.0119138941 0.710196591   14 30721702 30721725 24 + 0.084 0.000 -12.283
ENSG00000092108 E075 0.1187032 0.0119138941 0.710196591   14 30721726 30721771 46 + 0.084 0.000 -12.283
ENSG00000092108 E076 0.0000000       14 30721772 30721883 112 +      
ENSG00000092108 E077 11.3987559 0.0016648581 0.149072768 0.41132095 14 30721884 30721917 34 + 1.033 1.153 0.434
ENSG00000092108 E078 13.4202787 0.0118276364 0.771479023 0.91191702 14 30722494 30722559 66 + 1.146 1.170 0.087
ENSG00000092108 E079 0.0000000       14 30722560 30722842 283 +      
ENSG00000092108 E080 0.3808443 0.0327794438 0.061297911   14 30734494 30734789 296 + 0.000 0.266 14.568
ENSG00000092108 E081 13.3960910 0.0067187771 0.952764928 0.98834840 14 30734790 30734858 69 + 1.159 1.153 -0.020
ENSG00000092108 E082 17.8659260 0.0009531380 0.126292909 0.37676544 14 30735586 30737694 2109 + 1.224 1.328 0.364

Help

Please Click HERE to learn more details about the results from DEXseq.