ENSG00000095787

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000345541 ENSG00000095787 No_inf pgKDN_inf WAC protein_coding retained_intron 25.51262 18.73053 29.87706 1.868323 1.803014 0.6733592 0.4710722 1.0705050 0.1062017 0.06307033 0.04561818 -3.2170024 0.02344167 0.057950 0.003625 -0.054325 0.01591565 0.01591565 TRUE  
ENST00000354911 ENSG00000095787 No_inf pgKDN_inf WAC protein_coding protein_coding 25.51262 18.73053 29.87706 1.868323 1.803014 0.6733592 8.0987642 5.1333321 7.0551726 1.72978650 3.00717324 0.4580215 0.32939167 0.303375 0.245050 -0.058325 0.92650156 0.01591565 FALSE  
ENST00000424454 ENSG00000095787 No_inf pgKDN_inf WAC protein_coding nonsense_mediated_decay 25.51262 18.73053 29.87706 1.868323 1.803014 0.6733592 5.4416575 2.0437926 8.7497554 2.04379265 2.47706243 2.0926000 0.18735000 0.084750 0.280325 0.195575 0.09987583 0.01591565 FALSE  
ENST00000679428 ENSG00000095787 No_inf pgKDN_inf WAC protein_coding protein_coding 25.51262 18.73053 29.87706 1.868323 1.803014 0.6733592 0.2961458 0.8884375 0.0000000 0.88843749 0.00000000 -6.4893462 0.01913333 0.057400 0.000000 -0.057400 0.83336508 0.01591565 FALSE  
MSTRG.3228.17 ENSG00000095787 No_inf pgKDN_inf WAC protein_coding   25.51262 18.73053 29.87706 1.868323 1.803014 0.6733592 2.7088500 1.9223128 4.1440824 1.92231280 2.19594595 1.1042012 0.09375833 0.079700 0.131925 0.052225 0.61370846 0.01591565 FALSE  
MSTRG.3228.18 ENSG00000095787 No_inf pgKDN_inf WAC protein_coding   25.51262 18.73053 29.87706 1.868323 1.803014 0.6733592 1.3133194 1.2433010 1.1274395 0.86864342 0.82932923 -0.1399432 0.05142500 0.059025 0.038125 -0.020900 0.94405005 0.01591565 FALSE  
MSTRG.3228.5 ENSG00000095787 No_inf pgKDN_inf WAC protein_coding   25.51262 18.73053 29.87706 1.868323 1.803014 0.6733592 1.8995311 1.8716449 2.5859882 0.77920324 1.06992389 0.4642894 0.07617500 0.096925 0.083050 -0.013875 0.98552566 0.01591565 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000095787 E001 0.0000000       10 28532493 28532536 44 +      
ENSG00000095787 E002 0.0000000       10 28532537 28532767 231 +      
ENSG00000095787 E003 0.0000000       10 28532768 28532770 3 +      
ENSG00000095787 E004 0.0000000       10 28532771 28532772 2 +      
ENSG00000095787 E005 0.0000000       10 28532773 28532775 3 +      
ENSG00000095787 E006 0.0000000       10 28532776 28532778 3 +      
ENSG00000095787 E007 0.0000000       10 28532779 28532783 5 +      
ENSG00000095787 E008 0.0000000       10 28532784 28532794 11 +      
ENSG00000095787 E009 0.0000000       10 28532795 28533007 213 +      
ENSG00000095787 E010 0.6052820 1.774739e-02 7.965718e-01 0.9229578584 10 28533118 28533152 35 + 0.224 0.186 -0.338
ENSG00000095787 E011 1.8403944 1.682343e-02 5.702223e-01 0.8069047685 10 28533153 28533196 44 + 0.410 0.496 0.440
ENSG00000095787 E012 7.3437300 1.903936e-03 5.200289e-01 0.7745962632 10 28533197 28533312 116 + 0.889 0.954 0.247
ENSG00000095787 E013 5.9490026 4.258745e-03 3.293412e-01 0.6217284302 10 28533313 28533370 58 + 0.889 0.783 -0.412
ENSG00000095787 E014 10.3373979 1.432233e-03 3.912330e-01 0.6763721721 10 28533371 28533499 129 + 1.088 1.014 -0.267
ENSG00000095787 E015 3.3814179 4.492580e-03 1.460738e-01 0.4070566244 10 28533500 28533500 1 + 0.722 0.531 -0.831
ENSG00000095787 E016 3.3814179 4.492580e-03 1.460738e-01 0.4070566244 10 28533501 28533505 5 + 0.722 0.531 -0.831
ENSG00000095787 E017 4.2135005 5.035147e-03 4.042433e-02 0.1950304652 10 28533506 28533539 34 + 0.821 0.564 -1.075
ENSG00000095787 E018 5.9379525 2.396431e-03 2.030416e-01 0.4856516541 10 28533540 28533582 43 + 0.901 0.763 -0.537
ENSG00000095787 E019 4.4066549 3.271595e-03 6.193762e-01 0.8353655607 10 28533583 28533596 14 + 0.703 0.763 0.247
ENSG00000095787 E020 5.6046855 2.599578e-03 7.507359e-01 0.9016992914 10 28533597 28533620 24 + 0.835 0.802 -0.131
ENSG00000095787 E021 0.0000000       10 28533749 28533762 14 +      
ENSG00000095787 E022 0.0000000       10 28533763 28533893 131 +      
ENSG00000095787 E023 0.2539903 1.605681e-02 1.904971e-01   10 28533894 28533997 104 + 0.000 0.186 12.094
ENSG00000095787 E024 6.6662326 4.006154e-03 1.633712e-01 0.4321576426 10 28533998 28534034 37 + 0.948 0.802 -0.560
ENSG00000095787 E025 0.1176306 1.184522e-02 6.344255e-01   10 28534035 28534122 88 + 0.088 0.000 -11.626
ENSG00000095787 E026 0.3627758 1.660777e-02 6.920581e-01   10 28534123 28534182 60 + 0.161 0.103 -0.753
ENSG00000095787 E027 0.4994176 4.181780e-01 4.579405e-01   10 28534234 28534346 113 + 0.088 0.255 1.833
ENSG00000095787 E028 0.3813786 2.327292e-02 7.593003e-02   10 28535266 28535543 278 + 0.000 0.255 12.614
ENSG00000095787 E029 2.2114178 8.097424e-03 4.165633e-01 0.6964317211 10 28535544 28535561 18 + 0.447 0.564 0.569
ENSG00000095787 E030 18.8540664 6.992276e-03 1.770534e-01 0.4514650478 10 28535562 28535685 124 + 1.340 1.244 -0.338
ENSG00000095787 E031 17.2573248 4.201900e-03 1.060054e-01 0.3409444242 10 28535686 28535757 72 + 1.313 1.195 -0.415
ENSG00000095787 E032 0.2454921 1.641351e-02 8.968047e-01   10 28535758 28535909 152 + 0.088 0.103 0.247
ENSG00000095787 E033 0.0000000       10 28535910 28535918 9 +      
ENSG00000095787 E034 0.1176306 1.184522e-02 6.344255e-01   10 28535919 28536059 141 + 0.088 0.000 -11.626
ENSG00000095787 E035 0.3722815 1.671050e-02 4.852884e-01   10 28537584 28537815 232 + 0.088 0.186 1.247
ENSG00000095787 E036 0.2537079 2.890131e-01 2.506638e-01   10 28537950 28538066 117 + 0.000 0.186 11.521
ENSG00000095787 E037 0.2346346 1.560603e-02 3.051039e-01   10 28547941 28548063 123 + 0.161 0.000 -12.562
ENSG00000095787 E038 9.6839757 1.143113e-02 4.676380e-02 0.2123386559 10 28583399 28583405 7 + 1.111 0.914 -0.726
ENSG00000095787 E039 20.2343847 6.880982e-04 5.976166e-03 0.0563198563 10 28583406 28583505 100 + 1.403 1.224 -0.625
ENSG00000095787 E040 1.0069597 3.620764e-02 1.703911e-02 0.1140041714 10 28588737 28589735 999 + 0.088 0.457 3.054
ENSG00000095787 E041 20.4249625 1.298050e-02 1.488706e-01 0.4109522290 10 28589736 28589851 116 + 1.379 1.270 -0.381
ENSG00000095787 E042 9.2417673 2.541744e-03 2.708443e-01 0.5645493517 10 28590720 28590721 2 + 1.054 0.954 -0.370
ENSG00000095787 E043 25.5883924 6.334231e-03 3.670371e-01 0.6557264291 10 28590722 28590832 111 + 1.450 1.393 -0.196
ENSG00000095787 E044 1.1245257 1.073398e-02 5.252283e-02 0.2277875573 10 28590833 28591833 1001 + 0.161 0.457 2.054
ENSG00000095787 E045 0.4889046 1.397180e-01 8.661561e-01   10 28595695 28595732 38 + 0.161 0.186 0.247
ENSG00000095787 E046 17.6020255 8.596249e-04 7.369058e-01 0.8956859969 10 28595733 28595794 62 + 1.257 1.282 0.087
ENSG00000095787 E047 43.8263201 3.396413e-04 9.551024e-01 0.9890592934 10 28595795 28596041 247 + 1.651 1.651 -0.003
ENSG00000095787 E048 57.6369762 6.138414e-04 3.186645e-01 0.6112739597 10 28608186 28608431 246 + 1.785 1.748 -0.127
ENSG00000095787 E049 0.1176306 1.184522e-02 6.344255e-01   10 28608432 28608593 162 + 0.088 0.000 -11.626
ENSG00000095787 E050 12.4862657 1.211613e-03 4.010201e-01 0.6842334601 10 28610699 28610707 9 + 1.095 1.164 0.247
ENSG00000095787 E051 11.9952165 1.219405e-03 4.102700e-01 0.6921527959 10 28610708 28610710 3 + 1.080 1.148 0.247
ENSG00000095787 E052 29.3166881 1.895849e-03 9.048893e-01 0.9695449990 10 28610711 28610821 111 + 1.477 1.486 0.030
ENSG00000095787 E053 0.7530610 2.372370e-02 6.311625e-02 0.2527555629 10 28610822 28611009 188 + 0.088 0.368 2.569
ENSG00000095787 E054 1.6427374 8.042420e-03 3.874725e-04 0.0071105623 10 28611010 28611254 245 + 0.088 0.623 3.832
ENSG00000095787 E055 1.1149340 2.579618e-02 2.203009e-01 0.5072016769 10 28611255 28611481 227 + 0.224 0.415 1.247
ENSG00000095787 E056 0.3543453 1.573129e-02 1.395735e-01   10 28611482 28611773 292 + 0.224 0.000 -13.109
ENSG00000095787 E057 35.8843617 4.488048e-04 8.372358e-01 0.9416807214 10 28611774 28611922 149 + 1.570 1.562 -0.029
ENSG00000095787 E058 28.7011281 1.335562e-02 7.288148e-01 0.8918816408 10 28614567 28614685 119 + 1.460 1.486 0.088
ENSG00000095787 E059 1.8940523 7.112835e-03 8.830994e-05 0.0021464211 10 28614686 28614998 313 + 0.088 0.675 4.054
ENSG00000095787 E060 2.5198536 5.641046e-03 3.431697e-05 0.0009685252 10 28614999 28615327 329 + 0.161 0.763 3.417
ENSG00000095787 E061 2.3766002 1.151886e-02 3.871427e-03 0.0415112410 10 28615328 28615573 246 + 0.278 0.699 2.154
ENSG00000095787 E062 2.8932655 5.604065e-03 4.528412e-05 0.0012297854 10 28615574 28616172 599 + 0.224 0.802 2.984
ENSG00000095787 E063 6.8659241 2.168282e-02 2.988271e-01 0.5918165422 10 28616173 28616175 3 + 0.835 0.954 0.454
ENSG00000095787 E064 39.1310268 9.239931e-03 4.643297e-01 0.7338490585 10 28616176 28616362 187 + 1.581 1.627 0.157
ENSG00000095787 E065 32.7072381 3.558974e-03 7.401263e-01 0.8968699089 10 28617657 28617784 128 + 1.535 1.518 -0.056
ENSG00000095787 E066 0.0000000       10 28617785 28618041 257 +      
ENSG00000095787 E067 255.4607099 9.458845e-05 7.983274e-02 0.2899915713 10 28619537 28623112 3576 + 2.394 2.424 0.098

Help

Please Click HERE to learn more details about the results from DEXseq.