ENSG00000099219

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000214893 ENSG00000099219 No_inf pgKDN_inf ERMP1 protein_coding retained_intron 54.9021 55.52343 50.74174 13.16237 8.635957 -0.1298993 23.042404 15.5380959 27.674458 0.5023971 0.9442312 0.8323384 0.47761667 0.358400 0.587800 0.229400 0.392333329 0.001032947 FALSE TRUE
ENST00000690648 ENSG00000099219 No_inf pgKDN_inf ERMP1 protein_coding protein_coding 54.9021 55.52343 50.74174 13.16237 8.635957 -0.1298993 1.289917 2.8209070 1.048845 0.9583685 1.0488449 -1.4187731 0.03433333 0.078500 0.024500 -0.054000 0.456477899 0.001032947 FALSE TRUE
ENST00000691251 ENSG00000099219 No_inf pgKDN_inf ERMP1 protein_coding protein_coding 54.9021 55.52343 50.74174 13.16237 8.635957 -0.1298993 7.551470 0.9081361 11.166929 0.9081361 1.1088767 3.6056719 0.14996667 0.011550 0.229275 0.217725 0.001032947 0.001032947 FALSE TRUE
MSTRG.28501.32 ENSG00000099219 No_inf pgKDN_inf ERMP1 protein_coding   54.9021 55.52343 50.74174 13.16237 8.635957 -0.1298993 9.362180 7.8959113 8.586016 7.8959113 8.5860160 0.1207364 0.11586667 0.100375 0.112125 0.011750 1.000000000 0.001032947   FALSE
MSTRG.28501.33 ENSG00000099219 No_inf pgKDN_inf ERMP1 protein_coding   54.9021 55.52343 50.74174 13.16237 8.635957 -0.1298993 10.545240 25.1665022 0.000000 10.3527857 0.0000000 -11.2978621 0.15892500 0.380375 0.000000 -0.380375 0.039815706 0.001032947   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000099219 E001 0.0000000       9 5749832 5749978 147 -      
ENSG00000099219 E002 0.9718342 2.345282e-01 0.9740242881 0.995387733 9 5749979 5750873 895 - 0.283 0.296 0.086
ENSG00000099219 E003 0.1265070 1.226347e-02 0.2946284329   9 5750874 5750876 3 - 0.000 0.122 12.725
ENSG00000099219 E004 0.0000000       9 5764015 5764151 137 -      
ENSG00000099219 E005 0.0000000       9 5764152 5764152 1 -      
ENSG00000099219 E006 0.1271363 1.230620e-02 0.2946820282   9 5764153 5764210 58 - 0.000 0.122 12.725
ENSG00000099219 E007 0.3709943 1.656121e-02 0.2915152308   9 5764211 5764276 66 - 0.073 0.218 1.825
ENSG00000099219 E008 2.6041012 9.742021e-02 0.0197156502 0.125765095 9 5764277 5764697 421 - 0.359 0.745 1.825
ENSG00000099219 E009 3.2970201 3.449788e-02 0.4245031668 0.703708431 9 5764698 5765075 378 - 0.575 0.691 0.503
ENSG00000099219 E010 1.2250744 1.035248e-02 0.3767079265 0.663940711 9 5765076 5765788 713 - 0.283 0.420 0.825
ENSG00000099219 E011 0.6267447 1.473456e-02 0.0475302414 0.214357057 9 5779009 5779055 47 - 0.073 0.362 2.825
ENSG00000099219 E012 0.6070457 1.580114e-02 0.8601018511 0.951505205 9 5784561 5784570 10 - 0.191 0.218 0.240
ENSG00000099219 E013 0.7343081 1.431908e-02 0.4930087342 0.755025244 9 5784571 5784571 1 - 0.191 0.296 0.825
ENSG00000099219 E014 1.0971515 1.147914e-02 0.6133182594 0.831848845 9 5784572 5784582 11 - 0.283 0.362 0.503
ENSG00000099219 E015 1.5799849 8.897017e-03 0.8644926020 0.953132021 9 5784583 5784584 2 - 0.393 0.420 0.147
ENSG00000099219 E016 77.3721082 2.030704e-04 0.0002509467 0.005040805 9 5784585 5784986 402 - 1.830 1.954 0.418
ENSG00000099219 E017 379.8194441 7.408517e-05 0.0369897584 0.185185708 9 5784987 5786642 1656 - 2.557 2.584 0.090
ENSG00000099219 E018 60.2147616 4.145415e-03 0.6614234261 0.858724817 9 5786643 5787060 418 - 1.781 1.761 -0.068
ENSG00000099219 E019 20.2331622 2.949336e-02 0.9011328836 0.968064953 9 5787061 5787173 113 - 1.319 1.306 -0.047
ENSG00000099219 E020 23.5769767 2.514386e-03 0.3495286739 0.639931854 9 5787174 5787308 135 - 1.400 1.339 -0.209
ENSG00000099219 E021 8.4490054 1.635498e-03 0.2813552226 0.574687089 9 5787430 5787433 4 - 1.001 0.894 -0.398
ENSG00000099219 E022 27.1301718 5.214883e-04 0.7836109068 0.916783569 9 5787434 5787593 160 - 1.442 1.427 -0.051
ENSG00000099219 E023 2.3491241 6.003744e-03 0.0184252253 0.120090837 9 5787594 5788721 1128 - 0.359 0.691 1.602
ENSG00000099219 E024 0.0000000       9 5791234 5791282 49 -      
ENSG00000099219 E025 24.0962094 7.765149e-04 0.7763555607 0.914130928 9 5797817 5797932 116 - 1.393 1.377 -0.057
ENSG00000099219 E026 35.9018598 1.767831e-03 0.1462266368 0.407175767 9 5798806 5799008 203 - 1.582 1.504 -0.264
ENSG00000099219 E027 25.8514778 1.204764e-03 0.1421665245 0.401168963 9 5801176 5801328 153 - 1.448 1.358 -0.309
ENSG00000099219 E028 21.0178378 6.187671e-04 0.3897800474 0.675339559 9 5805027 5805217 191 - 1.308 1.365 0.198
ENSG00000099219 E029 18.2720019 8.835412e-04 0.5444978899 0.790956076 9 5805611 5805785 175 - 1.288 1.246 -0.147
ENSG00000099219 E030 21.2410286 2.709216e-02 0.2162087044 0.502336081 9 5810011 5810118 108 - 1.377 1.254 -0.430
ENSG00000099219 E031 11.7182413 2.800113e-02 0.4079650276 0.690361000 9 5810119 5810144 26 - 1.125 1.032 -0.335
ENSG00000099219 E032 15.3447911 9.525918e-04 0.2730598019 0.566845285 9 5810145 5810231 87 - 1.230 1.147 -0.296
ENSG00000099219 E033 24.9153098 6.292205e-04 0.3455919315 0.636507223 9 5811111 5811323 213 - 1.421 1.365 -0.196
ENSG00000099219 E034 14.4012836 4.401691e-03 0.7147396033 0.885059483 9 5812125 5812217 93 - 1.186 1.157 -0.103
ENSG00000099219 E035 0.6261154 1.510007e-02 0.0475475752 0.214385977 9 5812737 5812888 152 - 0.073 0.362 2.825
ENSG00000099219 E036 17.4821272 1.394932e-03 0.1029661364 0.335391733 9 5812889 5813035 147 - 1.296 1.176 -0.421
ENSG00000099219 E037 1.5563123 4.811039e-02 0.1185631446 0.363762708 9 5821918 5823157 1240 - 0.481 0.218 -1.635
ENSG00000099219 E038 0.2459004 1.624644e-02 0.6577850802   9 5823158 5823895 738 - 0.073 0.122 0.825
ENSG00000099219 E039 12.2465367 1.608919e-02 0.0291277655 0.160140357 9 5823896 5824001 106 - 1.181 0.961 -0.798
ENSG00000099219 E040 12.0549004 8.143993e-03 0.1615052794 0.429666341 9 5825092 5825219 128 - 1.148 1.019 -0.467
ENSG00000099219 E041 0.1268540 1.229632e-02 0.2946497300   9 5825220 5825285 66 - 0.000 0.122 12.725
ENSG00000099219 E042 22.1696345 6.570975e-04 0.0097078780 0.078829373 9 5830727 5831028 302 - 1.409 1.238 -0.598
ENSG00000099219 E043 0.1271363 1.230620e-02 0.2946820282   9 5832454 5832689 236 - 0.000 0.122 12.725
ENSG00000099219 E044 9.0399109 2.542820e-03 0.1405192112 0.398873568 9 5832690 5832817 128 - 1.039 0.894 -0.538
ENSG00000099219 E045 9.1911595 1.722854e-03 0.5566492048 0.798848337 9 5832818 5832980 163 - 1.016 0.961 -0.204
ENSG00000099219 E046 3.7745574 3.684481e-03 0.5113489723 0.768542591 9 5832981 5833312 332 - 0.635 0.719 0.355
ENSG00000099219 E047 0.1268540 1.229632e-02 0.2946497300   9 5841985 5842017 33 - 0.000 0.122 12.725
ENSG00000099219 E048 0.9819037 3.650492e-01 0.3991113520 0.682899389 9 5859468 5859611 144 - 0.240 0.362 0.822
ENSG00000099219 E049 0.5071304 1.591069e-02 0.0103447016 0.082084911 9 5860206 5860282 77 - 0.000 0.362 14.613
ENSG00000099219 E050 0.4991354 1.521717e-02 0.1190068592   9 5867802 5867902 101 - 0.073 0.296 2.410
ENSG00000099219 E051 0.0000000       9 5872158 5872216 59 -      
ENSG00000099219 E052 0.3719033 1.511488e-01 0.3258034799   9 5874819 5875063 245 - 0.073 0.218 1.825
ENSG00000099219 E053 1.0161486 1.151210e-02 0.0001379653 0.003090124 9 5875718 5877293 1576 - 0.000 0.557 15.555
ENSG00000099219 E054 0.8810788 1.894492e-02 0.0076787640 0.067212216 9 5878464 5879537 1074 - 0.073 0.470 3.410

Help

Please Click HERE to learn more details about the results from DEXseq.