ENSG00000099783

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000325495 ENSG00000099783 No_inf pgKDN_inf HNRNPM protein_coding protein_coding 138.8919 111.2738 154.3458 2.154351 5.629609 0.4720162 82.706330 65.282590 96.260689 2.116759 1.646300 0.5601773 0.59550833 0.587075 0.625825 0.03875 0.81029126 0.0002262268 FALSE  
ENST00000348943 ENSG00000099783 No_inf pgKDN_inf HNRNPM protein_coding protein_coding 138.8919 111.2738 154.3458 2.154351 5.629609 0.4720162 8.800586 4.009744 9.517230 1.023870 1.620250 1.2449532 0.06123333 0.036350 0.062100 0.02575 0.62875772 0.0002262268 FALSE  
ENST00000600092 ENSG00000099783 No_inf pgKDN_inf HNRNPM protein_coding protein_coding 138.8919 111.2738 154.3458 2.154351 5.629609 0.4720162 5.584905 0.000000 9.500286 0.000000 4.411000 9.8933448 0.03540000 0.000000 0.059100 0.05910 0.01418954 0.0002262268 FALSE  
MSTRG.14457.7 ENSG00000099783 No_inf pgKDN_inf HNRNPM protein_coding   138.8919 111.2738 154.3458 2.154351 5.629609 0.4720162 31.277532 26.604255 33.935901 1.958757 1.361698 0.3510382 0.22719167 0.238525 0.221125 -0.01740 0.87660448 0.0002262268 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000099783 E001 0.0000000       19 8444767 8444919 153 +      
ENSG00000099783 E002 0.0000000       19 8444920 8444954 35 +      
ENSG00000099783 E003 0.0000000       19 8444955 8444970 16 +      
ENSG00000099783 E004 0.0000000       19 8444971 8444974 4 +      
ENSG00000099783 E005 0.0000000       19 8444975 8444976 2 +      
ENSG00000099783 E006 0.0000000       19 8444977 8444977 1 +      
ENSG00000099783 E007 0.0000000       19 8444978 8444989 12 +      
ENSG00000099783 E008 0.0000000       19 8444990 8444991 2 +      
ENSG00000099783 E009 0.0000000       19 8444992 8444992 1 +      
ENSG00000099783 E010 0.0000000       19 8444993 8444993 1 +      
ENSG00000099783 E011 0.0000000       19 8444994 8445111 118 +      
ENSG00000099783 E012 97.4236414 1.882996e-04 3.756702e-01 6.630972e-01 19 8455405 8455574 170 + 2.004 1.977 -0.089
ENSG00000099783 E013 5.8954111 3.515880e-03 6.824168e-08 4.130805e-06 19 8461969 8462528 560 + 0.438 1.070 2.625
ENSG00000099783 E014 82.4832611 1.800832e-04 9.459486e-02 3.200075e-01 19 8462529 8462581 53 + 1.945 1.890 -0.185
ENSG00000099783 E015 0.4968720 3.433267e-02 2.241032e-01   19 8462582 8462589 8 + 0.085 0.261 1.925
ENSG00000099783 E016 56.5681307 2.770692e-04 7.830392e-01 9.165837e-01 19 8463497 8463500 4 + 1.763 1.753 -0.036
ENSG00000099783 E017 59.8183286 2.896265e-04 4.752679e-01 7.418273e-01 19 8463501 8463504 4 + 1.795 1.767 -0.093
ENSG00000099783 E018 92.8424660 1.868045e-04 4.833554e-01 7.479678e-01 19 8463593 8463638 46 + 1.981 1.959 -0.072
ENSG00000099783 E019 102.4562302 1.961803e-04 3.851900e-01 6.712169e-01 19 8463639 8463686 48 + 2.025 1.999 -0.085
ENSG00000099783 E020 1.1160930 4.201696e-02 1.934644e-01 4.732002e-01 19 8463687 8463852 166 + 0.218 0.424 1.339
ENSG00000099783 E021 90.2898202 1.856245e-04 4.897583e-01 7.526178e-01 19 8465324 8465362 39 + 1.969 1.947 -0.072
ENSG00000099783 E022 89.7894073 1.819571e-04 8.878196e-01 9.624857e-01 19 8465363 8465479 117 + 1.954 1.959 0.017
ENSG00000099783 E023 86.4265458 1.883487e-04 2.357142e-01 5.250489e-01 19 8465480 8465515 36 + 1.957 1.919 -0.128
ENSG00000099783 E024 65.2721745 3.238734e-04 5.415719e-02 2.316347e-01 19 8466235 8466248 14 + 1.852 1.780 -0.243
ENSG00000099783 E025 164.8236874 1.028926e-03 2.854056e-03 3.326580e-02 19 8466249 8466388 140 + 2.252 2.174 -0.260
ENSG00000099783 E026 88.8784238 1.777824e-04 2.484057e-02 1.448938e-01 19 8467535 8467584 50 + 1.984 1.912 -0.240
ENSG00000099783 E027 75.2616298 1.995787e-04 9.050347e-01 9.695450e-01 19 8468774 8468815 42 + 1.879 1.883 0.016
ENSG00000099783 E028 51.1716330 2.739280e-04 3.819990e-01 6.683119e-01 19 8468816 8468834 19 + 1.699 1.736 0.126
ENSG00000099783 E029 87.4801495 3.755321e-04 1.882175e-01 4.665558e-01 19 8471326 8471427 102 + 1.925 1.968 0.146
ENSG00000099783 E030 57.4802339 2.538810e-04 7.301974e-02 2.745670e-01 19 8473664 8473708 45 + 1.731 1.803 0.241
ENSG00000099783 E031 74.7594711 2.041208e-04 8.553690e-01 9.491180e-01 19 8474167 8474244 78 + 1.875 1.882 0.023
ENSG00000099783 E032 0.9982098 1.150826e-02 7.964531e-02 2.895773e-01 19 8481469 8481556 88 + 0.157 0.424 1.925
ENSG00000099783 E033 2.9865385 4.728466e-03 9.187746e-03 7.601348e-02 19 8482549 8483157 609 + 0.402 0.754 1.620
ENSG00000099783 E034 48.4804766 3.264552e-04 5.254162e-02 2.278141e-01 19 8483158 8483211 54 + 1.730 1.646 -0.285
ENSG00000099783 E035 158.4902813 4.591388e-04 6.895739e-01 8.724226e-01 19 8485603 8485861 259 + 2.205 2.196 -0.031
ENSG00000099783 E036 145.7975040 1.226958e-03 2.375767e-01 5.265592e-01 19 8485862 8486157 296 + 2.180 2.147 -0.110
ENSG00000099783 E037 160.7268017 1.971840e-04 5.151333e-01 7.713698e-01 19 8486158 8486405 248 + 2.214 2.199 -0.050
ENSG00000099783 E038 80.9697375 1.932497e-04 3.417158e-01 6.332063e-01 19 8487024 8487075 52 + 1.897 1.929 0.108
ENSG00000099783 E039 1.8968190 8.925421e-03 5.718194e-05 1.487724e-03 19 8487076 8487184 109 + 0.086 0.686 4.147
ENSG00000099783 E040 7.9435803 1.580209e-02 1.919401e-12 2.407465e-10 19 8487302 8488008 707 + 0.363 1.223 3.588
ENSG00000099783 E041 1.6331370 8.142523e-03 2.803088e-03 3.278260e-02 19 8488009 8488066 58 + 0.157 0.605 2.799
ENSG00000099783 E042 7.5255977 1.812773e-03 5.640129e-10 5.048895e-08 19 8488067 8488690 624 + 0.502 1.169 2.662
ENSG00000099783 E043 325.5490809 7.775788e-05 1.603210e-05 5.113395e-04 19 8488691 8489114 424 + 2.479 2.549 0.231

Help

Please Click HERE to learn more details about the results from DEXseq.