ENSG00000099797

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000215567 ENSG00000099797 No_inf pgKDN_inf TECR protein_coding protein_coding 88.02491 62.26222 92.49098 2.793284 1.3382 0.5708799 78.20084 52.37523 85.96292 3.17094 2.409132 0.7147223 0.8834 0.839625 0.9295 0.089875 0.04370818 0.04370818 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000099797 E001 0.0000000       19 14517085 14517384 300 +      
ENSG00000099797 E002 0.0000000       19 14529543 14529578 36 +      
ENSG00000099797 E003 0.0000000       19 14529579 14529591 13 +      
ENSG00000099797 E004 0.0000000       19 14529592 14529593 2 +      
ENSG00000099797 E005 0.0000000       19 14529594 14529594 1 +      
ENSG00000099797 E006 0.0000000       19 14529595 14529597 3 +      
ENSG00000099797 E007 0.0000000       19 14529598 14529609 12 +      
ENSG00000099797 E008 0.0000000       19 14529610 14529629 20 +      
ENSG00000099797 E009 0.0000000       19 14529630 14529635 6 +      
ENSG00000099797 E010 0.0000000       19 14529636 14529640 5 +      
ENSG00000099797 E011 0.0000000       19 14529641 14529656 16 +      
ENSG00000099797 E012 0.0000000       19 14529657 14529696 40 +      
ENSG00000099797 E013 0.0000000       19 14529697 14529711 15 +      
ENSG00000099797 E014 1.4989783 0.0515946399 0.035496221 0.18040456 19 14529712 14532528 2817 + 0.214 0.549 1.995
ENSG00000099797 E015 0.1186381 0.0118697442 0.711015486   19 14533933 14534046 114 + 0.084 0.000 -11.877
ENSG00000099797 E016 0.0000000       19 14536665 14536694 30 +      
ENSG00000099797 E017 0.2452102 0.0168180606 0.827878204   19 14545114 14545180 67 + 0.084 0.108 0.410
ENSG00000099797 E018 0.0000000       19 14545724 14545758 35 +      
ENSG00000099797 E019 0.0000000       19 14545759 14545888 130 +      
ENSG00000099797 E020 0.0000000       19 14561967 14562051 85 +      
ENSG00000099797 E021 0.0000000       19 14562052 14562121 70 +      
ENSG00000099797 E022 0.1272623 0.0123747749 0.404704867   19 14562356 14562524 169 + 0.000 0.108 12.591
ENSG00000099797 E023 21.4730695 0.0007330688 0.622447583 0.83732729 19 14562525 14562575 51 + 1.334 1.367 0.114
ENSG00000099797 E024 0.2530140 0.3400527736 0.226886362   19 14563141 14563173 33 + 0.000 0.194 13.590
ENSG00000099797 E025 1.6005006 0.0777556050 0.500022818 0.76019803 19 14563174 14563205 32 + 0.357 0.474 0.632
ENSG00000099797 E026 34.7980286 0.0004858558 0.261803552 0.55455631 19 14563206 14563257 52 + 1.525 1.583 0.197
ENSG00000099797 E027 0.0000000       19 14563258 14563526 269 +      
ENSG00000099797 E028 35.2925739 0.0059049742 0.221630910 0.50886220 19 14563658 14563702 45 + 1.525 1.595 0.240
ENSG00000099797 E029 0.1170040 0.0117220800 0.711099336   19 14563703 14563770 68 + 0.084 0.000 -11.877
ENSG00000099797 E030 0.1170040 0.0117220800 0.711099336   19 14563771 14563778 8 + 0.084 0.000 -11.877
ENSG00000099797 E031 0.2346346 0.0156179625 0.354219942   19 14563779 14563799 21 + 0.154 0.000 -12.877
ENSG00000099797 E032 33.8461856 0.0003869873 0.741943259 0.89785138 19 14563800 14563834 35 + 1.546 1.532 -0.051
ENSG00000099797 E033 48.1641216 0.0003257581 0.682783850 0.86858482 19 14563835 14563903 69 + 1.681 1.700 0.065
ENSG00000099797 E034 61.2677748 0.0002756173 0.811651627 0.93070279 19 14563982 14564057 76 + 1.795 1.788 -0.024
ENSG00000099797 E035 49.5842313 0.0003303735 0.161829692 0.43009659 19 14564058 14564097 40 + 1.726 1.669 -0.193
ENSG00000099797 E036 0.2537079 0.2709340559 0.213265236   19 14564098 14564181 84 + 0.000 0.194 13.591
ENSG00000099797 E037 47.0567269 0.0003623827 0.265830365 0.55928593 19 14564182 14564228 47 + 1.699 1.653 -0.157
ENSG00000099797 E038 36.0581333 0.0004276214 0.058265325 0.24167863 19 14564229 14564251 23 + 1.605 1.513 -0.314
ENSG00000099797 E039 42.3771624 0.0009384983 0.675547931 0.86558340 19 14564252 14564287 36 + 1.642 1.625 -0.059
ENSG00000099797 E040 0.0000000       19 14564694 14564697 4 +      
ENSG00000099797 E041 0.0000000       19 14564698 14564785 88 +      
ENSG00000099797 E042 60.4015407 0.0002874889 0.812773384 0.93122096 19 14564786 14564858 73 + 1.789 1.782 -0.024
ENSG00000099797 E043 1.3766636 0.0093213262 0.008910051 0.07444689 19 14564859 14564941 83 + 0.154 0.549 2.580
ENSG00000099797 E044 0.7520260 0.0133571662 0.044538940 0.20633909 19 14564942 14564948 7 + 0.084 0.382 2.732
ENSG00000099797 E045 35.4072949 0.0004420334 0.609136004 0.82995666 19 14564949 14564960 12 + 1.569 1.546 -0.081
ENSG00000099797 E046 36.1570904 0.0004779054 0.827322186 0.93748218 19 14564961 14564992 32 + 1.572 1.563 -0.031
ENSG00000099797 E047 0.6344876 0.0149515084 0.008916993 0.07449336 19 14564993 14565065 73 + 0.000 0.382 14.913
ENSG00000099797 E048 43.7565635 0.0003667664 0.707522396 0.88131758 19 14565066 14565123 58 + 1.640 1.659 0.063
ENSG00000099797 E049 0.6260544 0.0150161800 0.095778772 0.32232709 19 14565124 14565201 78 + 0.084 0.328 2.410
ENSG00000099797 E050 49.2328857 0.0003206259 0.136797038 0.39366191 19 14565202 14565290 89 + 1.669 1.733 0.216
ENSG00000099797 E051 38.1341967 0.0003971093 0.838439181 0.94210680 19 14565618 14565663 46 + 1.594 1.586 -0.027
ENSG00000099797 E052 0.2373413 0.0157938390 0.353844026   19 14565664 14565743 80 + 0.154 0.000 -12.877
ENSG00000099797 E053 19.2302241 0.0007237870 0.625599163 0.83894191 19 14565744 14565980 237 + 1.317 1.286 -0.107

Help

Please Click HERE to learn more details about the results from DEXseq.