ENSG00000100911

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000216802 ENSG00000100911 No_inf pgKDN_inf PSME2 protein_coding protein_coding 106.3113 85.80905 109.3102 2.470955 1.336906 0.3491902 85.03131 59.456483 92.275652 1.6644591 3.7412508 0.6340296 0.79081667 0.69380 0.843525 0.149725 0.008498834 0.0002406831 FALSE TRUE
ENST00000561103 ENSG00000100911 No_inf pgKDN_inf PSME2 protein_coding protein_coding_CDS_not_defined 106.3113 85.80905 109.3102 2.470955 1.336906 0.3491902 3.21436 5.973025 1.598914 0.2123355 0.9317008 -1.8947878 0.03383333 0.06975 0.014800 -0.054950 0.176706491 0.0002406831   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000100911 E001 0.000000       14 24143362 24143364 3 -      
ENSG00000100911 E002 0.381661 0.0233769114 7.696243e-02   14 24143365 24143365 1 - 0.000 0.255 11.135
ENSG00000100911 E003 1.241686 0.0104831205 1.298220e-01 0.382179492 14 24143366 24143366 1 - 0.224 0.456 1.458
ENSG00000100911 E004 4.408573 0.0035086487 6.364176e-01 0.844885635 14 24143367 24143381 15 - 0.704 0.762 0.236
ENSG00000100911 E005 15.602019 0.0009350942 6.161217e-02 0.249436338 14 24143382 24143404 23 - 1.149 1.286 0.486
ENSG00000100911 E006 15.846160 0.0009437148 6.172627e-02 0.249635363 14 24143405 24143406 2 - 1.156 1.292 0.483
ENSG00000100911 E007 35.886256 0.0004587302 8.841298e-01 0.961044007 14 24143407 24143488 82 - 1.569 1.563 -0.020
ENSG00000100911 E008 18.692293 0.0007684737 3.717617e-02 0.185629676 14 24143489 24143489 1 - 1.355 1.215 -0.491
ENSG00000100911 E009 0.244893 0.0164085997 9.011211e-01   14 24143490 24143584 95 - 0.088 0.102 0.236
ENSG00000100911 E010 18.576041 0.0007520716 4.379220e-02 0.204404047 14 24143585 24143593 9 - 1.351 1.215 -0.476
ENSG00000100911 E011 46.344827 0.0006453017 3.676925e-02 0.184603559 14 24143594 24143671 78 - 1.716 1.625 -0.308
ENSG00000100911 E012 2.720121 0.0052261038 1.006333e-01 0.331190914 14 24143672 24143974 303 - 0.448 0.674 1.043
ENSG00000100911 E013 56.783218 0.0006042017 2.918147e-01 0.585202920 14 24143975 24144029 55 - 1.780 1.740 -0.138
ENSG00000100911 E014 1.116695 0.0118785596 2.178022e-01 0.504290785 14 24144034 24144191 158 - 0.224 0.414 1.236
ENSG00000100911 E015 36.060832 0.0068894422 5.012696e-01 0.761293060 14 24144192 24144202 11 - 1.587 1.547 -0.136
ENSG00000100911 E016 60.215140 0.0002934196 3.011280e-01 0.594147992 14 24144203 24144259 57 - 1.804 1.766 -0.128
ENSG00000100911 E017 68.690140 0.0003072217 4.898776e-01 0.752735920 14 24144400 24144468 69 - 1.854 1.830 -0.078
ENSG00000100911 E018 7.631867 0.0540737853 2.584636e-01 0.550793285 14 24144469 24144799 331 - 0.851 1.013 0.610
ENSG00000100911 E019 10.547024 0.0162625113 6.791311e-04 0.011082680 14 24144800 24145057 258 - 0.864 1.208 1.261
ENSG00000100911 E020 58.929607 0.0017049080 5.368362e-01 0.786059644 14 24145058 24145133 76 - 1.764 1.791 0.092
ENSG00000100911 E021 29.144677 0.0005362598 6.085480e-01 0.829557084 14 24145134 24145155 22 - 1.491 1.465 -0.091
ENSG00000100911 E022 3.789203 0.0306269048 8.005225e-01 0.925418048 14 24145156 24145169 14 - 0.664 0.698 0.143
ENSG00000100911 E023 1.113920 0.0144328804 2.185093e-01 0.505153532 14 24145170 24145184 15 - 0.224 0.414 1.236
ENSG00000100911 E024 1.121789 0.0825841469 7.427263e-02 0.277796101 14 24145185 24145226 42 - 0.162 0.456 2.043
ENSG00000100911 E025 0.497781 0.0364377935 2.528354e-01   14 24145227 24145242 16 - 0.088 0.255 1.821
ENSG00000100911 E026 39.714315 0.0037125591 2.698478e-01 0.563495781 14 24145243 24145273 31 - 1.635 1.579 -0.192
ENSG00000100911 E027 1.108224 0.0115604304 5.707722e-01 0.807089987 14 24145274 24145378 105 - 0.279 0.367 0.558
ENSG00000100911 E028 71.615289 0.0002132802 9.695304e-02 0.324363591 14 24145379 24145465 87 - 1.887 1.830 -0.189
ENSG00000100911 E029 3.962878 0.0206640272 3.780054e-02 0.187625079 14 24145466 24145709 244 - 0.542 0.818 1.169
ENSG00000100911 E030 40.685456 0.0003506740 2.376323e-01 0.526573229 14 24145710 24145740 31 - 1.644 1.591 -0.182
ENSG00000100911 E031 32.651552 0.0004401798 3.070527e-01 0.600260338 14 24145741 24145752 12 - 1.550 1.499 -0.176
ENSG00000100911 E032 28.900682 0.0004936730 5.992101e-01 0.824288626 14 24145753 24145772 20 - 1.488 1.461 -0.094
ENSG00000100911 E033 8.671268 0.0020606958 1.053148e-03 0.015583345 14 24145773 24145857 85 - 0.807 1.121 1.175
ENSG00000100911 E034 6.810006 0.0113435667 1.444756e-02 0.102447359 14 24145858 24145896 39 - 0.741 1.013 1.043
ENSG00000100911 E035 4.728374 0.0031409696 2.021217e-03 0.025760595 14 24145897 24145911 15 - 0.542 0.912 1.531
ENSG00000100911 E036 23.860519 0.0006751192 4.549351e-03 0.046365208 14 24145912 24146207 296 - 1.305 1.476 0.595
ENSG00000100911 E037 50.868840 0.0070147409 7.002878e-01 0.877886802 14 24146208 24146240 33 - 1.723 1.705 -0.063
ENSG00000100911 E038 1.970359 0.0069104346 4.179734e-01 0.697690608 14 24146241 24146314 74 - 0.411 0.530 0.598
ENSG00000100911 E039 54.913841 0.0077733008 8.873177e-01 0.962297876 14 24146534 24146809 276 - 1.750 1.744 -0.021
ENSG00000100911 E040 7.954361 0.0019171887 9.921005e-05 0.002359257 14 24146810 24147221 412 - 0.723 1.112 1.480
ENSG00000100911 E041 1.471667 0.0090951699 7.845659e-01 0.916838543 14 24147222 24147258 37 - 0.372 0.414 0.236
ENSG00000100911 E042 0.000000       14 24147523 24147570 48 -      

Help

Please Click HERE to learn more details about the results from DEXseq.