ENSG00000101126

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000349014 ENSG00000101126 No_inf pgKDN_inf ADNP protein_coding protein_coding 21.50534 21.52044 24.23559 0.9919292 1.079167 0.1713442 10.6322597 9.281607 13.2203313 1.1420605 0.9034751 0.5098492 0.49384167 0.432550 0.549750 0.117200 0.67020700 0.04094766 FALSE  
ENST00000371602 ENSG00000101126 No_inf pgKDN_inf ADNP protein_coding protein_coding 21.50534 21.52044 24.23559 0.9919292 1.079167 0.1713442 1.3109160 2.399661 0.4607587 0.4498691 0.1145988 -2.3557706 0.06323333 0.113125 0.018600 -0.094525 0.05508444 0.04094766 FALSE  
ENST00000396029 ENSG00000101126 No_inf pgKDN_inf ADNP protein_coding protein_coding 21.50534 21.52044 24.23559 0.9919292 1.079167 0.1713442 4.8802602 5.863046 4.4309174 0.5192136 1.5160713 -0.4032513 0.23228333 0.274900 0.185975 -0.088925 0.81598880 0.04094766 FALSE  
ENST00000396032 ENSG00000101126 No_inf pgKDN_inf ADNP protein_coding protein_coding 21.50534 21.52044 24.23559 0.9919292 1.079167 0.1713442 1.6363815 2.010809 0.4992977 0.9814740 0.4992977 -1.9883518 0.07857500 0.090025 0.019250 -0.070775 0.46660207 0.04094766 FALSE  
ENST00000644386 ENSG00000101126 No_inf pgKDN_inf ADNP protein_coding protein_coding 21.50534 21.52044 24.23559 0.9919292 1.079167 0.1713442 1.4529818 1.746412 2.3263087 0.6191677 0.8361791 0.4115993 0.06109167 0.077675 0.091725 0.014050 0.99067126 0.04094766 FALSE  
ENST00000645081 ENSG00000101126 No_inf pgKDN_inf ADNP protein_coding protein_coding 21.50534 21.52044 24.23559 0.9919292 1.079167 0.1713442 0.7032349 0.000000 2.1097046 0.0000000 0.7644137 7.7277194 0.02787500 0.000000 0.083625 0.083625 0.04094766 0.04094766 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000101126 E001 0.0000000       20 50888916 50888917 2 -      
ENSG00000101126 E002 0.0000000       20 50888918 50889047 130 -      
ENSG00000101126 E003 48.9845650 4.128509e-04 0.0009283299 0.014175692 20 50889048 50889957 910 - 1.615 1.757 0.480
ENSG00000101126 E004 13.2207797 1.861149e-02 0.0730331981 0.274568582 20 50889958 50890335 378 - 1.051 1.222 0.612
ENSG00000101126 E005 2.2557956 5.870582e-02 0.0126437969 0.093556118 20 50890336 50890348 13 - 0.248 0.654 2.190
ENSG00000101126 E006 2.9818581 1.656491e-02 0.0775929879 0.285031550 20 50890349 50890371 23 - 0.446 0.697 1.148
ENSG00000101126 E007 445.7713458 9.154445e-05 0.0032861247 0.037016259 20 50890372 50894062 3691 - 2.660 2.639 -0.068
ENSG00000101126 E008 42.4124423 4.857527e-04 0.0401590547 0.194219732 20 50894063 50894512 450 - 1.683 1.592 -0.307
ENSG00000101126 E009 13.8789935 1.151710e-03 0.0284939358 0.158085116 20 50902017 50902109 93 - 1.253 1.087 -0.592
ENSG00000101126 E010 11.8774161 1.193196e-03 0.5685401809 0.805943723 20 50903889 50904001 113 - 1.132 1.087 -0.162
ENSG00000101126 E011 4.7562569 3.220678e-03 0.0007689713 0.012259443 20 50904002 50904765 764 - 0.484 0.904 1.774
ENSG00000101126 E012 2.0762306 1.375273e-01 0.7438988186 0.898717355 20 50904766 50904849 84 - 0.519 0.458 -0.302
ENSG00000101126 E013 5.1385802 6.826463e-03 0.0000635377 0.001617961 20 50904850 50905558 709 - 0.446 0.952 2.148
ENSG00000101126 E014 1.1144584 1.063679e-02 0.3907403246 0.676126567 20 50909500 50909791 292 - 0.248 0.381 0.867
ENSG00000101126 E015 0.2541163 1.602989e-02 0.2767161341   20 50918739 50918781 43 - 0.000 0.167 9.303
ENSG00000101126 E016 6.6099179 7.183644e-02 0.9786019065 0.997089115 20 50928651 50928825 175 - 0.884 0.878 -0.024
ENSG00000101126 E017 7.9962730 5.415499e-03 0.4815024483 0.746546112 20 50930826 50931437 612 - 0.913 0.984 0.269

Help

Please Click HERE to learn more details about the results from DEXseq.