ENSG00000101187

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000217159 ENSG00000101187 No_inf pgKDN_inf SLCO4A1 protein_coding protein_coding 118.495 16.36751 147.3316 0.6387372 6.014085 3.169376 58.732261 2.816810 69.976900 0.5550660 3.320763 4.6298380 0.39852500 0.175500 0.478300 0.302800 0.0002226672 0.0002226672 FALSE TRUE
ENST00000451793 ENSG00000101187 No_inf pgKDN_inf SLCO4A1 protein_coding protein_coding 118.495 16.36751 147.3316 0.6387372 6.014085 3.169376 11.514929 6.821379 17.387337 1.0760182 5.816110 1.3486177 0.19368333 0.411650 0.117025 -0.294625 0.0242554991 0.0002226672 FALSE FALSE
ENST00000466818 ENSG00000101187 No_inf pgKDN_inf SLCO4A1 protein_coding protein_coding_CDS_not_defined 118.495 16.36751 147.3316 0.6387372 6.014085 3.169376 2.597555 1.400678 2.698009 0.4901466 1.390038 0.9408435 0.04150000 0.086325 0.019250 -0.067075 0.5107639946 0.0002226672   FALSE
ENST00000497209 ENSG00000101187 No_inf pgKDN_inf SLCO4A1 protein_coding nonsense_mediated_decay 118.495 16.36751 147.3316 0.6387372 6.014085 3.169376 6.608520 1.170451 7.150180 0.2710817 1.222933 2.6006576 0.05981667 0.070550 0.049200 -0.021350 0.8336666781 0.0002226672 TRUE TRUE
ENST00000497919 ENSG00000101187 No_inf pgKDN_inf SLCO4A1 protein_coding protein_coding_CDS_not_defined 118.495 16.36751 147.3316 0.6387372 6.014085 3.169376 9.966180 0.000000 14.845056 0.0000000 8.570799 10.5367384 0.05684167 0.000000 0.094775 0.094775 0.8835449234 0.0002226672 FALSE FALSE
MSTRG.18518.1 ENSG00000101187 No_inf pgKDN_inf SLCO4A1 protein_coding   118.495 16.36751 147.3316 0.6387372 6.014085 3.169376 12.093223 3.956915 16.890092 0.4501826 2.811407 2.0909419 0.14601667 0.243650 0.114025 -0.129625 0.1547369511 0.0002226672 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000101187 E001 1.3175605 0.0406811475 4.926001e-01 7.547145e-01 20 62642465 62642502 38 + 0.249 0.379 0.853
ENSG00000101187 E002 4.5462387 0.0031095543 1.784839e-01 4.533675e-01 20 62642503 62642519 17 + 0.564 0.770 0.876
ENSG00000101187 E003 9.4354320 0.0014683875 2.562341e-01 5.482762e-01 20 62642520 62642553 34 + 0.829 0.972 0.542
ENSG00000101187 E004 0.1186381 0.0118107501 4.914136e-01   20 62642727 62642782 56 + 0.036 0.000 -7.073
ENSG00000101187 E005 0.4911106 0.0160712468 4.628835e-02   20 62656341 62656358 18 + 0.069 0.379 3.023
ENSG00000101187 E006 167.3373302 0.0001213577 4.311922e-02 2.024190e-01 20 62656359 62657250 892 + 2.043 1.972 -0.238
ENSG00000101187 E007 39.2170300 0.0003872168 3.395068e-01 6.311939e-01 20 62658677 62658767 91 + 1.426 1.355 -0.246
ENSG00000101187 E008 0.2374063 0.2523597285 1.000000e+00   20 62660374 62660411 38 + 0.069 0.001 -7.144
ENSG00000101187 E009 56.6084924 0.0002441699 7.314024e-01 8.932539e-01 20 62660412 62660533 122 + 1.575 1.555 -0.068
ENSG00000101187 E010 34.8441925 0.0005579225 3.710162e-03 4.031102e-02 20 62661064 62661175 112 + 1.393 1.132 -0.915
ENSG00000101187 E011 0.0000000       20 62664934 62665088 155 +      
ENSG00000101187 E012 0.0000000       20 62666380 62666414 35 +      
ENSG00000101187 E013 0.0000000       20 62666415 62666575 161 +      
ENSG00000101187 E014 0.2435110 0.0163887564 1.030442e-01   20 62667478 62667586 109 + 0.036 0.230 3.023
ENSG00000101187 E015 0.2448930 0.0161915595 1.032378e-01   20 62667741 62667744 4 + 0.036 0.230 3.023
ENSG00000101187 E016 22.1877222 0.0006092204 5.942369e-02 2.445872e-01 20 62667745 62667812 68 + 1.202 1.003 -0.719
ENSG00000101187 E017 41.0713934 0.0003417970 4.467369e-02 2.066053e-01 20 62667813 62667869 57 + 1.453 1.298 -0.539
ENSG00000101187 E018 38.8482237 0.0003449194 2.772957e-01 5.706527e-01 20 62667870 62667910 41 + 1.423 1.341 -0.284
ENSG00000101187 E019 3.8424541 0.0072665119 8.112091e-02 2.926103e-01 20 62667911 62668011 101 + 0.498 0.770 1.187
ENSG00000101187 E020 76.9953608 0.0007463380 6.940323e-03 6.272108e-02 20 62668012 62668154 143 + 1.719 1.563 -0.528
ENSG00000101187 E021 27.6718986 0.0006438027 3.203053e-01 6.131444e-01 20 62668155 62668157 3 + 1.283 1.195 -0.312
ENSG00000101187 E022 35.8856800 0.0003929914 4.291093e-01 7.075383e-01 20 62668158 62668184 27 + 1.388 1.327 -0.211
ENSG00000101187 E023 7.4955526 0.0508870540 6.543386e-01 8.548745e-01 20 62668185 62668418 234 + 0.757 0.818 0.243
ENSG00000101187 E024 2.1613079 0.0065688907 1.753934e-01 4.494294e-01 20 62668419 62668476 58 + 0.343 0.579 1.216
ENSG00000101187 E025 27.7449738 0.0005322644 4.808678e-01 7.460769e-01 20 62668477 62668479 3 + 1.267 1.327 0.209
ENSG00000101187 E026 50.0547797 0.0038232595 6.249808e-01 8.385891e-01 20 62668480 62668541 62 + 1.524 1.492 -0.113
ENSG00000101187 E027 105.3695313 0.0001574417 6.262881e-01 8.393870e-01 20 62668930 62669078 149 + 1.839 1.819 -0.069
ENSG00000101187 E028 14.7791225 0.0010876753 3.475250e-01 6.381605e-01 20 62669951 62670053 103 + 1.008 1.109 0.369
ENSG00000101187 E029 10.5820874 0.0059901314 9.377946e-01 9.821151e-01 20 62670054 62670120 67 + 0.891 0.902 0.042
ENSG00000101187 E030 82.8414964 0.0002121201 1.398838e-07 7.883485e-06 20 62670121 62671266 1146 + 1.700 1.932 0.782
ENSG00000101187 E031 44.9613103 0.0011340577 4.676561e-04 8.296895e-03 20 62671267 62671749 483 + 1.444 1.660 0.738
ENSG00000101187 E032 207.8114384 0.0001156964 4.903929e-01 7.530259e-01 20 62671750 62672455 706 + 2.126 2.148 0.073
ENSG00000101187 E033 2.8574760 0.0050329737 8.164756e-01 9.331199e-01 20 62672456 62672613 158 + 0.448 0.490 0.216
ENSG00000101187 E034 2.1800046 0.1688526021 9.596793e-03 7.828092e-02 20 62685441 62685785 345 + 0.288 0.770 2.373

Help

Please Click HERE to learn more details about the results from DEXseq.