ENSG00000101605

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000261606 ENSG00000101605 No_inf pgKDN_inf MYOM1 protein_coding protein_coding 1.516678 0.6039598 2.482388 0.2560047 0.5069791 2.021313 0.24909952 0.0000000 0.4217098 0.00000000 0.08932696 5.431990 0.2176667 0.000000 0.202600 0.202600 0.635348540 0.007297103 FALSE TRUE
ENST00000356443 ENSG00000101605 No_inf pgKDN_inf MYOM1 protein_coding protein_coding 1.516678 0.6039598 2.482388 0.2560047 0.5069791 2.021313 0.26527441 0.3871200 0.0000000 0.05370993 0.00000000 -5.311503 0.3520250 0.840875 0.000000 -0.840875 0.007297103 0.007297103 FALSE TRUE
ENST00000581075 ENSG00000101605 No_inf pgKDN_inf MYOM1 protein_coding nonsense_mediated_decay 1.516678 0.6039598 2.482388 0.2560047 0.5069791 2.021313 0.40694887 0.0000000 0.4914537 0.00000000 0.28600575 5.648045 0.1815917 0.000000 0.210375 0.210375 0.838535393 0.007297103 TRUE TRUE
ENST00000581804 ENSG00000101605 No_inf pgKDN_inf MYOM1 protein_coding protein_coding_CDS_not_defined 1.516678 0.6039598 2.482388 0.2560047 0.5069791 2.021313 0.50631589 0.2168398 1.3021079 0.21683980 0.48392697 2.532141 0.2255750 0.159125 0.517600 0.358475 0.757829876 0.007297103   FALSE
ENST00000582016 ENSG00000101605 No_inf pgKDN_inf MYOM1 protein_coding retained_intron 1.516678 0.6039598 2.482388 0.2560047 0.5069791 2.021313 0.08903888 0.0000000 0.2671166 0.00000000 0.26711663 4.792421 0.0231500 0.000000 0.069450 0.069450 1.000000000 0.007297103 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000101605 E001 0.1265070 0.013717006 0.406390830   18 3066807 3066952 146 - 0.000 0.094 11.239
ENSG00000101605 E002 1.4893204 0.010726669 0.094105585 0.31929357 18 3066953 3067264 312 - 0.300 0.466 0.954
ENSG00000101605 E003 2.9237865 0.007709263 0.856083894 0.94938303 18 3067265 3067555 291 - 0.651 0.533 -0.532
ENSG00000101605 E004 0.6094054 0.018926380 0.884714748 0.96116819 18 3071834 3071889 56 - 0.242 0.171 -0.631
ENSG00000101605 E005 0.2374063 0.248671911 0.407166442   18 3075454 3075476 23 - 0.175 0.000 -15.395
ENSG00000101605 E006 0.0000000       18 3075477 3075651 175 -      
ENSG00000101605 E007 0.3621152 0.019675120 0.773908562   18 3075725 3075737 13 - 0.175 0.094 -1.046
ENSG00000101605 E008 0.2352613 0.038666484 0.358046605   18 3075738 3075761 24 - 0.175 0.000 -15.422
ENSG00000101605 E009 0.7078638 0.017728333 0.021538369 0.13297280 18 3079179 3079342 164 - 0.397 0.000 -16.414
ENSG00000101605 E010 0.7083097 0.013917076 0.020617995 0.12936377 18 3083789 3083894 106 - 0.397 0.000 -16.415
ENSG00000101605 E011 0.6074541 0.015882503 0.883146803 0.96060582 18 3083989 3084027 39 - 0.242 0.171 -0.631
ENSG00000101605 E012 0.6063816 0.017154865 0.886252926 0.96194738 18 3085045 3085132 88 - 0.242 0.171 -0.631
ENSG00000101605 E013 0.5868999 0.079450897 0.050501286 0.22207390 18 3086038 3086151 114 - 0.351 0.000 -16.238
ENSG00000101605 E014 0.4692693 0.046365329 0.086056132   18 3089174 3089241 68 - 0.300 0.000 -16.048
ENSG00000101605 E015 0.1176306 0.012097274 0.702445977   18 3089537 3089596 60 - 0.096 0.000 -14.749
ENSG00000101605 E016 0.9803347 0.015802336 0.702739181 0.87908002 18 3090658 3090802 145 - 0.300 0.293 -0.046
ENSG00000101605 E017 0.8364535 0.014159986 0.097183899 0.32471295 18 3094170 3094306 137 - 0.397 0.094 -2.631
ENSG00000101605 E018 0.1272623 0.012962173 0.407082717   18 3100159 3100203 45 - 0.000 0.094 13.833
ENSG00000101605 E019 0.5083889 0.016549391 0.022500576 0.13638414 18 3100320 3100426 107 - 0.000 0.293 15.329
ENSG00000101605 E020 0.3720293 0.017451339 0.427683232   18 3102474 3102630 157 - 0.096 0.171 0.954
ENSG00000101605 E021 0.7426766 0.014833992 0.246389093 0.53706033 18 3112298 3112412 115 - 0.175 0.293 0.954
ENSG00000101605 E022 0.7331709 0.015307665 0.736679978 0.89557304 18 3116331 3116515 185 - 0.242 0.236 -0.046
ENSG00000101605 E023 0.1187032 0.012589325 0.701866366   18 3119869 3119971 103 - 0.096 0.000 -14.749
ENSG00000101605 E024 0.1187032 0.012589325 0.701866366   18 3119972 3119995 24 - 0.096 0.000 -14.749
ENSG00000101605 E025 0.3644776 0.018167900 0.766053826   18 3126701 3126897 197 - 0.175 0.094 -1.046
ENSG00000101605 E026 0.1186381 0.012860709 0.701523406   18 3129232 3129519 288 - 0.096 0.000 -14.749
ENSG00000101605 E027 0.0000000       18 3129520 3129581 62 -      
ENSG00000101605 E028 0.2457744 0.017444130 0.832542909   18 3131375 3131496 122 - 0.096 0.094 -0.046
ENSG00000101605 E029 0.3726284 0.018130077 0.428730832   18 3134650 3134824 175 - 0.096 0.171 0.954
ENSG00000101605 E030 0.0000000       18 3135058 3135546 489 -      
ENSG00000101605 E031 0.4998298 0.018264334 0.204959814   18 3135547 3135730 184 - 0.096 0.236 1.539
ENSG00000101605 E032 0.3729758 0.019852707 0.430642648   18 3141939 3142063 125 - 0.096 0.171 0.954
ENSG00000101605 E033 0.2451451 0.017944872 0.829386234   18 3149145 3149201 57 - 0.096 0.094 -0.046
ENSG00000101605 E034 1.0077764 0.013856911 0.008503823 0.07200081 18 3151694 3151893 200 - 0.096 0.429 2.761
ENSG00000101605 E035 0.6169223 0.018225023 0.449982093 0.72346969 18 3154947 3155088 142 - 0.175 0.236 0.539
ENSG00000101605 E036 0.1176306 0.012097274 0.702445977   18 3164278 3164439 162 - 0.096 0.000 -14.749
ENSG00000101605 E037 0.1271363 0.012768870 0.407435165   18 3168817 3168981 165 - 0.000 0.094 13.833
ENSG00000101605 E038 0.0000000       18 3173938 3174000 63 -      
ENSG00000101605 E039 0.0000000       18 3174120 3174208 89 -      
ENSG00000101605 E040 0.1268540 0.013414888 0.406654220   18 3176042 3176134 93 - 0.000 0.094 13.833
ENSG00000101605 E041 0.4703418 0.018412826 0.080895211   18 3187480 3187637 158 - 0.300 0.000 -16.053
ENSG00000101605 E042 0.4805351 0.017115628 0.465720896   18 3188748 3189087 340 - 0.242 0.094 -1.631
ENSG00000101605 E043 0.0000000       18 3193818 3193958 141 -      
ENSG00000101605 E044 0.3720293 0.017451339 0.427683232   18 3214934 3215251 318 - 0.096 0.171 0.954
ENSG00000101605 E045 0.1272623 0.012962173 0.407082717   18 3219803 3219968 166 - 0.000 0.094 13.833

Help

Please Click HERE to learn more details about the results from DEXseq.