ENSG00000101972

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000218089 ENSG00000101972 No_inf pgKDN_inf STAG2 protein_coding protein_coding 30.46588 30.62081 34.00574 0.7181877 0.7519388 0.1512187 3.983617 4.586082 4.815650 0.7183491 0.8824052 0.07031868 0.12917500 0.148875 0.140300 -0.008575 0.9856645 0.013054 FALSE TRUE
ENST00000371144 ENSG00000101972 No_inf pgKDN_inf STAG2 protein_coding protein_coding 30.46588 30.62081 34.00574 0.7181877 0.7519388 0.1512187 3.866179 5.648747 0.000000 2.0569220 0.0000000 -9.14433893 0.13530000 0.183750 0.000000 -0.183750 0.0130540 0.013054 FALSE TRUE
ENST00000371157 ENSG00000101972 No_inf pgKDN_inf STAG2 protein_coding protein_coding 30.46588 30.62081 34.00574 0.7181877 0.7519388 0.1512187 4.370717 0.000000 5.690375 0.0000000 3.4145210 9.15491290 0.15028333 0.000000 0.169275 0.169275 0.5013856 0.013054 FALSE TRUE
ENST00000688971 ENSG00000101972 No_inf pgKDN_inf STAG2 protein_coding retained_intron 30.46588 30.62081 34.00574 0.7181877 0.7519388 0.1512187 5.018534 9.041891 2.880752 0.2758139 1.3911425 -1.64677412 0.16646667 0.296325 0.085150 -0.211175 0.1498094 0.013054   FALSE
MSTRG.30426.27 ENSG00000101972 No_inf pgKDN_inf STAG2 protein_coding   30.46588 30.62081 34.00574 0.7181877 0.7519388 0.1512187 3.744252 2.561794 8.670961 2.5617937 3.4504959 1.75507988 0.11420833 0.085775 0.256850 0.171075 0.2585777 0.013054 FALSE TRUE
MSTRG.30426.28 ENSG00000101972 No_inf pgKDN_inf STAG2 protein_coding   30.46588 30.62081 34.00574 0.7181877 0.7519388 0.1512187 1.594110 0.000000 4.782331 0.0000000 2.7791774 8.90458384 0.04528333 0.000000 0.135850 0.135850 0.4822921 0.013054 FALSE TRUE
MSTRG.30426.7 ENSG00000101972 No_inf pgKDN_inf STAG2 protein_coding   30.46588 30.62081 34.00574 0.7181877 0.7519388 0.1512187 3.617987 3.297494 4.385353 1.4954397 1.8299520 0.41024039 0.11757500 0.106175 0.131525 0.025350 0.9740118 0.013054 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000101972 E001 0.1265070 1.229551e-02 4.653005e-01   X 123960212 123960288 77 + 0.000 0.102 11.442
ENSG00000101972 E002 0.0000000       X 123960519 123960559 41 +      
ENSG00000101972 E003 0.2536433 1.602083e-02 1.966825e-01   X 123960560 123960570 11 + 0.000 0.184 14.561
ENSG00000101972 E004 1.3697661 9.629616e-03 7.992355e-02 0.2901781648 X 123960571 123960651 81 + 0.226 0.492 1.626
ENSG00000101972 E005 1.1060790 7.855495e-02 6.040471e-01 0.8273529553 X 123960652 123960669 18 + 0.281 0.365 0.533
ENSG00000101972 E006 1.2157197 1.278504e-01 7.156147e-01 0.8853258763 X 123960670 123960694 25 + 0.374 0.312 -0.375
ENSG00000101972 E007 6.7743761 1.495315e-02 1.114317e-01 0.3505165573 X 123960695 123960863 169 + 0.795 0.974 0.687
ENSG00000101972 E008 1.6333542 1.080137e-02 4.707413e-03 0.0474648735 X 123960864 123960866 3 + 0.163 0.591 2.670
ENSG00000101972 E009 0.3706473 1.660293e-02 4.977719e-01   X 123960867 123960942 76 + 0.089 0.184 1.211
ENSG00000101972 E010 0.0000000       X 123961314 123961317 4 +      
ENSG00000101972 E011 0.0000000       X 123961318 123961386 69 +      
ENSG00000101972 E012 0.0000000       X 123961387 123961435 49 +      
ENSG00000101972 E013 0.1186381 1.183286e-02 6.209191e-01   X 123961706 123961715 10 + 0.089 0.000 -14.147
ENSG00000101972 E014 0.1186381 1.183286e-02 6.209191e-01   X 123961716 123961717 2 + 0.089 0.000 -14.147
ENSG00000101972 E015 0.1186381 1.183286e-02 6.209191e-01   X 123961718 123961724 7 + 0.089 0.000 -14.147
ENSG00000101972 E016 0.1186381 1.183286e-02 6.209191e-01   X 123961725 123961725 1 + 0.089 0.000 -14.147
ENSG00000101972 E017 0.1186381 1.183286e-02 6.209191e-01   X 123961726 123961738 13 + 0.089 0.000 -14.147
ENSG00000101972 E018 0.7438075 3.239539e-02 3.285051e-01 0.6210162469 X 123961739 123961774 36 + 0.163 0.312 1.211
ENSG00000101972 E019 0.9975768 1.566930e-01 1.649778e-01 0.4344683187 X 123961775 123961785 11 + 0.163 0.412 1.795
ENSG00000101972 E020 1.2508420 6.404390e-02 4.184742e-02 0.1990649807 X 123961786 123961801 16 + 0.163 0.492 2.211
ENSG00000101972 E021 1.6058139 2.942810e-02 2.942699e-01 0.5875886797 X 123961802 123961822 21 + 0.330 0.492 0.889
ENSG00000101972 E022 2.5957839 5.267247e-03 1.584441e-01 0.4254678631 X 123961823 123961856 34 + 0.450 0.646 0.911
ENSG00000101972 E023 0.1271363 1.232280e-02 4.653626e-01   X 123962033 123962078 46 + 0.000 0.102 13.615
ENSG00000101972 E024 0.2543986 1.603261e-02 1.966876e-01   X 123962079 123962093 15 + 0.000 0.184 14.561
ENSG00000101972 E025 0.2543986 1.603261e-02 1.966876e-01   X 123962094 123962106 13 + 0.000 0.184 14.561
ENSG00000101972 E026 0.1265070 1.229551e-02 4.653005e-01   X 123963170 123963401 232 + 0.000 0.102 13.615
ENSG00000101972 E027 0.1272623 1.236331e-02 4.653114e-01   X 124003467 124003747 281 + 0.000 0.102 13.614
ENSG00000101972 E028 0.0000000       X 124018358 124018423 66 +      
ENSG00000101972 E029 4.5990666 3.119078e-03 3.696658e-03 0.0402128975 X 124021367 124021431 65 + 0.544 0.895 1.452
ENSG00000101972 E030 6.1958434 2.274723e-03 5.754004e-03 0.0547523686 X 124022531 124022552 22 + 0.687 0.986 1.168
ENSG00000101972 E031 13.3359244 3.493574e-03 7.866772e-01 0.9179517672 X 124022553 124022671 119 + 1.145 1.167 0.078
ENSG00000101972 E032 9.7360534 1.433674e-03 3.606098e-01 0.6502597431 X 124025840 124025918 79 + 1.068 0.986 -0.300
ENSG00000101972 E033 0.2442663 1.631487e-02 9.104094e-01   X 124026565 124026687 123 + 0.089 0.102 0.211
ENSG00000101972 E034 18.9546833 1.042715e-02 1.195700e-01 0.3655209687 X 124030961 124031125 165 + 1.354 1.232 -0.429
ENSG00000101972 E035 12.2269599 1.327141e-02 7.744630e-01 0.9132949294 X 124037527 124037623 97 + 1.108 1.135 0.095
ENSG00000101972 E036 0.1268540 1.231014e-02 4.653356e-01   X 124040895 124042505 1611 + 0.000 0.102 13.615
ENSG00000101972 E037 0.0000000       X 124042506 124042568 63 +      
ENSG00000101972 E038 11.3887677 1.755517e-02 5.913007e-01 0.8192569248 X 124042569 124042645 77 + 1.068 1.118 0.179
ENSG00000101972 E039 20.2631867 7.351617e-04 2.472316e-02 0.1445440698 X 124045164 124045368 205 + 1.392 1.245 -0.512
ENSG00000101972 E040 19.0881377 7.742062e-04 8.381167e-02 0.2986652675 X 124047354 124047505 152 + 1.354 1.239 -0.405
ENSG00000101972 E041 12.4245096 1.106104e-03 4.471978e-02 0.2067668147 X 124049005 124049078 74 + 1.042 1.204 0.584
ENSG00000101972 E042 0.0000000       X 124049079 124049798 720 +      
ENSG00000101972 E043 18.5590922 9.731377e-03 9.460459e-01 0.9855147026 X 124050186 124050309 124 + 1.288 1.294 0.021
ENSG00000101972 E044 12.8635456 3.825363e-02 2.488233e-01 0.5396895906 X 124051121 124051219 99 + 1.198 1.072 -0.454
ENSG00000101972 E045 9.2864800 1.771650e-03 9.558394e-01 0.9893155486 X 124051315 124051394 80 + 1.014 1.009 -0.018
ENSG00000101972 E046 12.1947379 1.320609e-03 6.364930e-01 0.8448856354 X 124056128 124056235 108 + 1.138 1.100 -0.137
ENSG00000101972 E047 13.6958842 1.005638e-03 1.900879e-02 0.1227955239 X 124057866 124057977 112 + 1.246 1.062 -0.657
ENSG00000101972 E048 18.6835021 1.130493e-03 1.308306e-02 0.0957954656 X 124061224 124061341 118 + 1.367 1.197 -0.597
ENSG00000101972 E049 23.7997894 8.592282e-04 1.575645e-02 0.1086615044 X 124061771 124061874 104 + 1.459 1.311 -0.511
ENSG00000101972 E050 18.0760296 8.312808e-04 2.036579e-02 0.1284087705 X 124062902 124062994 93 + 1.350 1.190 -0.563
ENSG00000101972 E051 18.9698791 8.929195e-04 9.771911e-02 0.3258473322 X 124063116 124063205 90 + 1.350 1.239 -0.390
ENSG00000101972 E052 0.0000000       X 124063206 124063548 343 +      
ENSG00000101972 E053 31.3552207 7.997933e-04 2.828133e-02 0.1572824627 X 124063848 124064051 204 + 1.562 1.445 -0.402
ENSG00000101972 E054 12.2158601 2.969634e-02 9.905546e-01 1.0000000000 X 124065876 124065946 71 + 1.123 1.118 -0.021
ENSG00000101972 E055 15.2800767 4.455548e-03 3.442999e-02 0.1772403182 X 124066175 124066262 88 + 1.283 1.118 -0.588
ENSG00000101972 E056 14.8085316 9.987970e-04 5.491738e-02 0.2334237701 X 124066356 124066436 81 + 1.262 1.118 -0.514
ENSG00000101972 E057 15.4322200 6.606611e-03 5.630302e-01 0.8026050114 X 124068564 124068656 93 + 1.192 1.239 0.165
ENSG00000101972 E058 26.6448898 1.366715e-03 8.018648e-01 0.9261024637 X 124071149 124071323 175 + 1.434 1.449 0.052
ENSG00000101972 E059 28.7542804 5.047432e-04 3.302584e-01 0.6227791104 X 124076332 124076471 140 + 1.498 1.445 -0.183
ENSG00000101972 E060 0.0000000       X 124076472 124077050 579 +      
ENSG00000101972 E061 30.0415781 5.356805e-03 8.980484e-01 0.9663489668 X 124077957 124078058 102 + 1.495 1.488 -0.025
ENSG00000101972 E062 33.4442560 4.507457e-04 8.013241e-01 0.9258882686 X 124081380 124081528 149 + 1.543 1.530 -0.043
ENSG00000101972 E063 26.5205050 5.545171e-04 1.310746e-01 0.3840662981 X 124083421 124083549 129 + 1.479 1.393 -0.297
ENSG00000101972 E064 0.1268540 1.231014e-02 4.653356e-01   X 124083550 124085400 1851 + 0.000 0.102 13.615
ENSG00000101972 E065 0.3711203 1.656396e-02 4.977110e-01   X 124085401 124085760 360 + 0.089 0.184 1.211
ENSG00000101972 E066 50.7090297 3.011554e-04 1.122806e-01 0.3522085902 X 124086547 124086770 224 + 1.680 1.746 0.225
ENSG00000101972 E067 52.5808915 2.809515e-04 4.411679e-01 0.7166852604 X 124090575 124090764 190 + 1.743 1.712 -0.105
ENSG00000101972 E068 0.0000000       X 124090765 124090853 89 +      
ENSG00000101972 E069 8.0909025 1.686858e-03 4.080626e-01 0.6904611140 X 124090854 124090964 111 + 0.918 0.998 0.298
ENSG00000101972 E070 0.2356421 1.569441e-02 2.959455e-01   X 124093475 124093503 29 + 0.163 0.000 -15.086
ENSG00000101972 E071 0.4903851 1.580757e-02 8.854690e-01   X 124093504 124094017 514 + 0.163 0.184 0.211
ENSG00000101972 E072 47.1168531 3.469034e-04 8.351801e-01 0.9406943640 X 124094018 124094144 127 + 1.686 1.678 -0.029
ENSG00000101972 E073 38.6722779 4.596474e-03 6.113808e-01 0.8308704974 X 124095372 124095449 78 + 1.611 1.584 -0.091
ENSG00000101972 E074 4.9706540 2.865772e-03 2.842313e-03 0.0331525324 X 124095450 124097163 1714 + 0.572 0.923 1.433
ENSG00000101972 E075 380.5172902 8.038369e-05 2.301495e-05 0.0006946573 X 124100574 124102656 2083 + 2.554 2.609 0.183
ENSG00000101972 E076 0.0000000       X 124411822 124412090 269 +      
ENSG00000101972 E077 0.0000000       X 124422398 124422664 267 +      

Help

Please Click HERE to learn more details about the results from DEXseq.