ENSG00000102054

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000330735 ENSG00000102054 No_inf pgKDN_inf RBBP7 protein_coding retained_intron 80.68169 74.2171 81.92309 4.382172 3.262087 0.1425001 14.563762 18.699160 10.148276 3.7414082 3.610602 -0.8810892 0.17716667 0.245825 0.119300 -0.126525 0.58769606 0.02164928 FALSE  
ENST00000380087 ENSG00000102054 No_inf pgKDN_inf RBBP7 protein_coding protein_coding 80.68169 74.2171 81.92309 4.382172 3.262087 0.1425001 20.639222 16.491251 22.420798 3.2098230 1.750160 0.4429055 0.26121667 0.232100 0.277600 0.045500 0.83467830 0.02164928 FALSE  
ENST00000404022 ENSG00000102054 No_inf pgKDN_inf RBBP7 protein_coding protein_coding 80.68169 74.2171 81.92309 4.382172 3.262087 0.1425001 30.737232 21.759178 36.534975 1.6207350 1.392009 0.7473861 0.38045833 0.292925 0.449650 0.156725 0.06157114 0.02164928 FALSE  
ENST00000416035 ENSG00000102054 No_inf pgKDN_inf RBBP7 protein_coding protein_coding 80.68169 74.2171 81.92309 4.382172 3.262087 0.1425001 6.961927 8.929469 5.228998 2.7481846 3.060527 -0.7708984 0.08272500 0.115775 0.060175 -0.055600 0.58486801 0.02164928 FALSE  
ENST00000486166 ENSG00000102054 No_inf pgKDN_inf RBBP7 protein_coding retained_intron 80.68169 74.2171 81.92309 4.382172 3.262087 0.1425001 3.862489 6.227168 1.551898 0.3745162 0.581744 -1.9975909 0.04888333 0.084650 0.018300 -0.066350 0.02164928 0.02164928 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000102054 E001 0.1187032 0.0118535988 6.097799e-01   X 16839283 16839390 108 - 0.090 0.000 -10.068
ENSG00000102054 E002 0.3539644 0.0306018560 1.321130e-01   X 16844341 16844649 309 - 0.228 0.000 -11.653
ENSG00000102054 E003 0.3533378 0.0157312156 1.297152e-01   X 16844650 16844653 4 - 0.228 0.000 -11.653
ENSG00000102054 E004 6.2294515 0.0025840235 9.773611e-01 9.965915e-01 X 16844654 16844689 36 - 0.859 0.859 0.001
ENSG00000102054 E005 117.1069280 0.0001637936 1.443387e-01 4.044662e-01 X 16844690 16845027 338 - 2.054 2.090 0.119
ENSG00000102054 E006 51.9839437 0.0003563299 5.179685e-01 7.732933e-01 X 16845028 16845103 76 - 1.738 1.709 -0.101
ENSG00000102054 E007 37.2273232 0.0023585160 6.723033e-01 8.642801e-01 X 16845828 16845870 43 - 1.594 1.569 -0.086
ENSG00000102054 E008 42.8853237 0.0036154637 1.841920e-01 4.613053e-01 X 16845871 16845938 68 - 1.676 1.604 -0.242
ENSG00000102054 E009 4.0926888 0.0047823664 2.415629e-02 1.423719e-01 X 16845939 16848990 3052 - 0.549 0.827 1.170
ENSG00000102054 E010 0.2438580 0.0165238781 9.216355e-01   X 16848991 16849243 253 - 0.090 0.100 0.170
ENSG00000102054 E011 51.7247089 0.0002689029 6.360652e-01 8.447976e-01 X 16849244 16849301 58 - 1.714 1.730 0.054
ENSG00000102054 E012 58.9783100 0.0004047584 3.777437e-02 1.875752e-01 X 16852046 16852122 77 - 1.738 1.816 0.260
ENSG00000102054 E013 2.9589690 0.0090188053 2.716390e-01 5.653756e-01 X 16852123 16852280 158 - 0.519 0.666 0.656
ENSG00000102054 E014 2.5936351 0.1456670176 3.074246e-01 6.006166e-01 X 16852416 16852550 135 - 0.454 0.641 0.872
ENSG00000102054 E015 27.3905733 0.0095965100 1.078024e-01 3.442539e-01 X 16852551 16852551 1 - 1.398 1.504 0.364
ENSG00000102054 E016 53.0552423 0.0005110324 1.209221e-01 3.679235e-01 X 16852552 16852628 77 - 1.702 1.762 0.204
ENSG00000102054 E017 3.5065063 0.1599018303 1.382182e-02 9.914429e-02 X 16852629 16852748 120 - 0.378 0.827 2.044
ENSG00000102054 E018 70.0734540 0.0037155633 8.465642e-01 9.455866e-01 X 16852749 16852875 127 - 1.858 1.846 -0.041
ENSG00000102054 E019 20.1714250 0.0008488204 2.539840e-11 2.739675e-09 X 16852876 16853681 806 - 1.047 1.500 1.594
ENSG00000102054 E020 81.0559603 0.0002836042 4.687547e-01 7.368644e-01 X 16853682 16853842 161 - 1.927 1.900 -0.091
ENSG00000102054 E021 58.6959733 0.0002668553 5.723949e-01 8.084097e-01 X 16857594 16857709 116 - 1.767 1.785 0.062
ENSG00000102054 E022 68.4143059 0.0003015564 9.738923e-01 9.953877e-01 X 16858676 16858822 147 - 1.844 1.839 -0.015
ENSG00000102054 E023 29.7802690 0.0004886641 6.693404e-01 8.624700e-01 X 16858823 16858849 27 - 1.501 1.475 -0.090
ENSG00000102054 E024 19.0964437 0.0101614379 2.498058e-01 5.407820e-01 X 16862955 16862956 2 - 1.347 1.252 -0.330
ENSG00000102054 E025 55.0322609 0.0192673977 8.241478e-01 9.361749e-01 X 16862957 16863100 144 - 1.760 1.736 -0.079
ENSG00000102054 E026 25.3292636 0.0160387103 5.324320e-01 7.828547e-01 X 16869076 16869115 40 - 1.447 1.391 -0.191
ENSG00000102054 E027 47.4820046 0.0004601031 9.852687e-04 1.483514e-02 X 16869116 16869220 105 - 1.751 1.604 -0.498
ENSG00000102054 E028 0.0000000       X 16869221 16869254 34 -      
ENSG00000102054 E029 2.9076700 0.1176069825 3.110953e-01 6.042863e-01 X 16869494 16870037 544 - 0.671 0.488 -0.830
ENSG00000102054 E030 21.9771192 0.0203716909 7.484101e-02 2.790897e-01 X 16870038 16870046 9 - 1.429 1.277 -0.528
ENSG00000102054 E031 49.5710132 0.0057465155 4.915940e-03 4.898140e-02 X 16870047 16870362 316 - 1.770 1.621 -0.507

Help

Please Click HERE to learn more details about the results from DEXseq.