ENSG00000102100

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000247138 ENSG00000102100 No_inf pgKDN_inf SLC35A2 protein_coding protein_coding 22.49791 12.11231 28.8815 1.119378 0.7880969 1.252981 4.2077606 0.0000000 6.8947502 0.0000000 0.7182061 9.431445 0.15096667 0.000000 0.238175 0.238175 7.125244e-08 7.125244e-08 FALSE TRUE
ENST00000376521 ENSG00000102100 No_inf pgKDN_inf SLC35A2 protein_coding protein_coding 22.49791 12.11231 28.8815 1.119378 0.7880969 1.252981 0.6812476 1.0851068 0.2719538 0.4155281 0.2719538 -1.957541 0.04230833 0.090975 0.008875 -0.082100 2.793320e-01 7.125244e-08 FALSE TRUE
ENST00000413561 ENSG00000102100 No_inf pgKDN_inf SLC35A2 protein_coding protein_coding 22.49791 12.11231 28.8815 1.119378 0.7880969 1.252981 7.4357984 3.4161489 8.0606764 0.3412356 1.3167486 1.236102 0.32652500 0.285400 0.280775 -0.004625 9.987446e-01 7.125244e-08 FALSE TRUE
ENST00000445167 ENSG00000102100 No_inf pgKDN_inf SLC35A2 protein_coding protein_coding 22.49791 12.11231 28.8815 1.119378 0.7880969 1.252981 7.6496736 4.8399600 10.8353803 0.4035106 1.4568332 1.161036 0.35120000 0.407925 0.373425 -0.034500 9.211308e-01 7.125244e-08 FALSE TRUE
ENST00000634665 ENSG00000102100 No_inf pgKDN_inf SLC35A2 protein_coding protein_coding 22.49791 12.11231 28.8815 1.119378 0.7880969 1.252981 0.5165764 1.5497292 0.0000000 0.9135260 0.0000000 -7.285152 0.03790833 0.113725 0.000000 -0.113725 2.947279e-01 7.125244e-08 FALSE TRUE
ENST00000635015 ENSG00000102100 No_inf pgKDN_inf SLC35A2 protein_coding protein_coding 22.49791 12.11231 28.8815 1.119378 0.7880969 1.252981 1.2705814 0.7759997 2.1199145 0.3653616 0.6442116 1.438195 0.05717500 0.064775 0.074400 0.009625 9.368118e-01 7.125244e-08 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000102100 E001 0.0000000       X 48903180 48903182 3 -      
ENSG00000102100 E002 0.0000000       X 48903183 48903183 1 -      
ENSG00000102100 E003 0.3617709 0.0165680995 0.974374671   X 48903184 48903465 282 - 0.124 0.134 0.129
ENSG00000102100 E004 0.1176306 0.0117669390 1.000000000   X 48903466 48903612 147 - 0.067 0.000 -9.262
ENSG00000102100 E005 0.2362687 0.0157203619 0.666610694   X 48903613 48903613 1 - 0.124 0.000 -10.177
ENSG00000102100 E006 47.3157584 0.0003462409 0.004638179 0.0469247 X 48903614 48904163 550 - 1.617 1.731 0.388
ENSG00000102100 E007 18.1133628 0.0007495848 0.994908574 1.0000000 X 48904164 48904283 120 - 1.256 1.256 -0.003
ENSG00000102100 E008 8.4254658 0.0015782923 0.437680472 0.7139440 X 48904284 48904311 28 - 0.975 0.896 -0.295
ENSG00000102100 E009 9.2722216 0.0027660370 0.594663800 0.8217622 X 48904312 48904343 32 - 1.004 0.952 -0.193
ENSG00000102100 E010 12.6102925 0.0011789015 0.254756406 0.5465624 X 48904344 48904439 96 - 1.076 1.169 0.333
ENSG00000102100 E011 17.6533669 0.0008177073 0.823605593 0.9359730 X 48904440 48904745 306 - 1.240 1.256 0.054
ENSG00000102100 E012 14.0007481 0.0130665980 0.814860965 0.9323955 X 48904746 48904892 147 - 1.159 1.136 -0.082
ENSG00000102100 E013 20.6072065 0.0006770083 0.332059411 0.6242129 X 48904893 48905165 273 - 1.330 1.264 -0.229
ENSG00000102100 E014 6.2193374 0.0024166659 0.048695783 0.2174498 X 48905166 48905259 94 - 0.900 0.665 -0.941
ENSG00000102100 E015 3.4872025 0.0069070256 0.399244673 0.6830472 X 48905260 48905295 36 - 0.667 0.548 -0.523
ENSG00000102100 E016 5.7430193 0.0026827563 0.048712374 0.2174701 X 48905296 48905397 102 - 0.872 0.629 -0.986
ENSG00000102100 E017 7.4269907 0.0046412767 0.070259989 0.2681813 X 48905398 48905482 85 - 0.959 0.756 -0.785
ENSG00000102100 E018 1.4257442 0.0422879284 0.066988744 0.2608832 X 48905859 48905955 97 - 0.450 0.134 -2.330
ENSG00000102100 E019 2.6696674 0.0878047118 0.641659842 0.8479050 X 48905956 48906134 179 - 0.521 0.591 0.321
ENSG00000102100 E020 1.9437035 0.0072901416 0.606815605 0.8288698 X 48906135 48906391 257 - 0.424 0.501 0.392
ENSG00000102100 E021 16.6265024 0.0008668077 0.415772709 0.6958108 X 48906392 48906508 117 - 1.240 1.179 -0.215
ENSG00000102100 E022 8.5332350 0.0017161709 0.164852511 0.4343235 X 48906509 48906543 35 - 0.997 0.855 -0.538
ENSG00000102100 E023 9.2791951 0.0143401660 0.464322697 0.7338491 X 48909814 48909852 39 - 1.012 0.935 -0.286
ENSG00000102100 E024 12.3924562 0.0011959966 0.089000130 0.3095918 X 48909853 48909996 144 - 1.052 1.190 0.497
ENSG00000102100 E025 0.0000000       X 48910234 48910317 84 -      
ENSG00000102100 E026 0.0000000       X 48911469 48911506 38 -      
ENSG00000102100 E027 0.0000000       X 48911507 48911545 39 -      
ENSG00000102100 E028 7.3023855 0.0287000265 0.089864361 0.3114268 X 48911546 48911712 167 - 0.821 1.017 0.742
ENSG00000102100 E029 0.4884040 0.0157970324 0.439157775   X 48911713 48911858 146 - 0.124 0.237 1.129
ENSG00000102100 E030 0.3711203 0.0169563774 0.212327643   X 48911859 48911958 100 - 0.067 0.237 2.129

Help

Please Click HERE to learn more details about the results from DEXseq.