ENSG00000102710

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000360252 ENSG00000102710 No_inf pgKDN_inf SUPT20H protein_coding protein_coding 19.2894 21.11286 18.71952 1.289389 1.536208 -0.1734908 1.2489160 2.437014 0.8028524 1.5118667 0.8028524 -1.5899569 0.06167500 0.110100 0.042975 -0.067125 8.228028e-01 3.602961e-07 FALSE TRUE
ENST00000469488 ENSG00000102710 No_inf pgKDN_inf SUPT20H protein_coding protein_coding 19.2894 21.11286 18.71952 1.289389 1.536208 -0.1734908 1.9149705 1.426750 2.1154559 1.0335288 1.2526183 0.5649637 0.09855000 0.062450 0.105650 0.043200 9.482456e-01 3.602961e-07 FALSE TRUE
ENST00000475892 ENSG00000102710 No_inf pgKDN_inf SUPT20H protein_coding protein_coding 19.2894 21.11286 18.71952 1.289389 1.536208 -0.1734908 5.2903761 3.497183 6.6955399 1.2780073 1.2985182 0.9350406 0.29193333 0.176925 0.378875 0.201950 6.046390e-01 3.602961e-07 FALSE TRUE
ENST00000476539 ENSG00000102710 No_inf pgKDN_inf SUPT20H protein_coding protein_coding_CDS_not_defined 19.2894 21.11286 18.71952 1.289389 1.536208 -0.1734908 0.6223770 1.632326 0.2348046 0.7245303 0.2348046 -2.7460381 0.02961667 0.076275 0.012575 -0.063700 4.775202e-01 3.602961e-07 TRUE FALSE
ENST00000484078 ENSG00000102710 No_inf pgKDN_inf SUPT20H protein_coding retained_intron 19.2894 21.11286 18.71952 1.289389 1.536208 -0.1734908 0.8187521 1.595908 0.3830087 0.3827463 0.1462726 -2.0307564 0.04204167 0.079175 0.020900 -0.058275 3.888476e-01 3.602961e-07 FALSE TRUE
ENST00000493537 ENSG00000102710 No_inf pgKDN_inf SUPT20H protein_coding retained_intron 19.2894 21.11286 18.71952 1.289389 1.536208 -0.1734908 1.4542172 2.638108 0.7247403 0.2966008 0.2001176 -1.8496555 0.07432500 0.123950 0.038050 -0.085900 2.090377e-01 3.602961e-07 FALSE TRUE
ENST00000495071 ENSG00000102710 No_inf pgKDN_inf SUPT20H protein_coding nonsense_mediated_decay 19.2894 21.11286 18.71952 1.289389 1.536208 -0.1734908 1.9048609 4.986231 0.1292919 0.2850921 0.1292919 -5.1646566 0.09397500 0.238550 0.005600 -0.232950 2.417899e-06 3.602961e-07 TRUE TRUE
ENST00000497318 ENSG00000102710 No_inf pgKDN_inf SUPT20H protein_coding protein_coding 19.2894 21.11286 18.71952 1.289389 1.536208 -0.1734908 0.6514305 0.000000 1.9542915 0.0000000 1.2636428 7.6178652 0.03038333 0.000000 0.091150 0.091150 4.188843e-01 3.602961e-07 FALSE FALSE
MSTRG.7711.14 ENSG00000102710 No_inf pgKDN_inf SUPT20H protein_coding   19.2894 21.11286 18.71952 1.289389 1.536208 -0.1734908 1.5840733 0.000000 3.7007343 0.0000000 0.7284009 8.5355609 0.08092500 0.000000 0.196575 0.196575 3.602961e-07 3.602961e-07 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000102710 E001 0.0000000       13 37009312 37009315 4 -      
ENSG00000102710 E002 0.0000000       13 37009316 37009492 177 -      
ENSG00000102710 E003 0.0000000       13 37009493 37009493 1 -      
ENSG00000102710 E004 0.0000000       13 37009494 37009496 3 -      
ENSG00000102710 E005 0.0000000       13 37009497 37009616 120 -      
ENSG00000102710 E006 0.0000000       13 37009617 37009738 122 -      
ENSG00000102710 E007 0.0000000       13 37009739 37009809 71 -      
ENSG00000102710 E008 0.0000000       13 37010552 37010655 104 -      
ENSG00000102710 E009 0.0000000       13 37010656 37010852 197 -      
ENSG00000102710 E010 11.6099267 0.0028686515 3.422987e-01 6.337129e-01 13 37012192 37012297 106 - 1.049 1.127 0.284
ENSG00000102710 E011 2.7177528 0.0228569046 4.765634e-01 7.430323e-01 13 37012298 37013906 1609 - 0.505 0.607 0.468
ENSG00000102710 E012 14.9498954 0.0010373414 1.591033e-01 4.263465e-01 13 37017245 37017328 84 - 1.136 1.239 0.366
ENSG00000102710 E013 8.5424646 0.0019409912 1.097463e-01 3.476684e-01 13 37017329 37017364 36 - 0.881 1.033 0.568
ENSG00000102710 E014 6.3051766 0.0023192770 3.130495e-01 6.063788e-01 13 37019342 37019397 56 - 0.795 0.901 0.413
ENSG00000102710 E015 0.0000000       13 37021448 37021602 155 -      
ENSG00000102710 E016 0.0000000       13 37022011 37022080 70 -      
ENSG00000102710 E017 0.0000000       13 37022081 37022222 142 -      
ENSG00000102710 E018 0.0000000       13 37022223 37022317 95 -      
ENSG00000102710 E019 0.0000000       13 37022318 37023044 727 -      
ENSG00000102710 E020 7.1608970 0.0044657139 1.300071e-06 5.843169e-05 13 37023549 37024034 486 - 0.505 1.067 2.276
ENSG00000102710 E021 9.9601453 0.0014147952 9.681171e-01 9.936142e-01 13 37024035 37024133 99 - 1.038 1.033 -0.017
ENSG00000102710 E022 7.2772011 0.0018802239 5.803841e-01 8.127758e-01 13 37024134 37024150 17 - 0.881 0.935 0.205
ENSG00000102710 E023 11.5895689 0.0014319782 4.525618e-01 7.257171e-01 13 37024151 37024193 43 - 1.059 1.120 0.220
ENSG00000102710 E024 12.9741377 0.0011446110 1.363729e-01 3.928051e-01 13 37024340 37024442 103 - 1.070 1.186 0.420
ENSG00000102710 E025 2.5046522 0.0057538425 2.369690e-02 1.408030e-01 13 37024443 37024947 505 - 0.322 0.651 1.661
ENSG00000102710 E026 0.6335114 0.0526145307 4.214954e-02 1.998324e-01 13 37025191 37025319 129 - 0.000 0.320 11.686
ENSG00000102710 E027 0.7516790 0.0146120322 1.586538e-01 4.257539e-01 13 37025320 37025437 118 - 0.106 0.320 1.983
ENSG00000102710 E028 0.8776490 0.1639283562 1.435535e-01 4.035028e-01 13 37025830 37026203 374 - 0.106 0.363 2.245
ENSG00000102710 E029 1.3789894 0.0093144884 6.971883e-02 2.670360e-01 13 37026204 37026236 33 - 0.190 0.471 1.831
ENSG00000102710 E030 2.9736745 0.0097795309 2.861184e-01 5.797614e-01 13 37026790 37026816 27 - 0.505 0.651 0.661
ENSG00000102710 E031 11.1489036 0.0048168869 2.423327e-01 5.320888e-01 13 37028148 37028305 158 - 1.136 1.033 -0.371
ENSG00000102710 E032 0.0000000       13 37028306 37028308 3 -      
ENSG00000102710 E033 6.2431440 0.0022790753 3.348848e-01 6.267259e-01 13 37029765 37029836 72 - 0.912 0.809 -0.396
ENSG00000102710 E034 6.8900987 0.0028090630 8.382220e-01 9.420435e-01 13 37031567 37031623 57 - 0.881 0.901 0.076
ENSG00000102710 E035 12.5558521 0.0012150074 8.216870e-01 9.353299e-01 13 37031739 37031895 157 - 1.118 1.134 0.059
ENSG00000102710 E036 14.1080059 0.0009830212 4.308142e-01 7.085732e-01 13 37033449 37033588 140 - 1.208 1.148 -0.214
ENSG00000102710 E037 0.7372970 0.0141143119 7.800276e-01 9.152418e-01 13 37038035 37040403 2369 - 0.261 0.218 -0.339
ENSG00000102710 E038 0.0000000       13 37040404 37040404 1 -      
ENSG00000102710 E039 5.9443756 0.0025005171 2.152223e-01 5.009840e-01 13 37040405 37040416 12 - 0.754 0.889 0.528
ENSG00000102710 E040 7.4035086 0.0021414060 5.080963e-01 7.664327e-01 13 37040417 37040458 42 - 0.881 0.946 0.246
ENSG00000102710 E041 14.0622345 0.0010723027 8.291040e-02 2.967279e-01 13 37040576 37040692 117 - 1.243 1.113 -0.465
ENSG00000102710 E042 14.8760683 0.0009464474 5.458789e-03 5.276242e-02 13 37044078 37044181 104 - 1.301 1.098 -0.720
ENSG00000102710 E043 13.9637470 0.0012303723 1.503705e-01 4.129772e-01 13 37045247 37045373 127 - 1.230 1.120 -0.390
ENSG00000102710 E044 1.3279070 0.0907573063 9.124226e-02 3.137814e-01 13 37045374 37045376 3 - 0.506 0.218 -1.755
ENSG00000102710 E045 0.9720202 0.2875216357 3.702377e-01 6.585016e-01 13 37046864 37047345 482 - 0.376 0.218 -1.076
ENSG00000102710 E046 0.2435110 0.0167842225 8.566188e-01   13 37047346 37047408 63 - 0.106 0.086 -0.339
ENSG00000102710 E047 0.1265070 0.0124393009 6.779413e-01   13 37047409 37047534 126 - 0.000 0.086 9.364
ENSG00000102710 E048 6.7621381 0.0546922106 2.216706e-03 2.760467e-02 13 37047535 37047601 67 - 1.080 0.651 -1.662
ENSG00000102710 E049 8.2270220 0.0017848543 9.591499e-05 2.292015e-03 13 37047878 37047936 59 - 1.136 0.763 -1.403
ENSG00000102710 E050 0.0000000       13 37047937 37047937 1 -      
ENSG00000102710 E051 6.2088532 0.0181466705 5.676662e-02 2.378720e-01 13 37048564 37048599 36 - 0.967 0.746 -0.854
ENSG00000102710 E052 0.2455571 0.0163232345 8.571673e-01   13 37048600 37048600 1 - 0.106 0.086 -0.339
ENSG00000102710 E053 5.4366374 0.0142921340 4.708712e-01 7.384481e-01 13 37051488 37051541 54 - 0.754 0.837 0.328
ENSG00000102710 E054 3.5010377 0.0046913977 1.222084e-02 9.154424e-02 13 37051542 37051583 42 - 0.424 0.763 1.535
ENSG00000102710 E055 0.0000000       13 37056878 37057133 256 -      
ENSG00000102710 E056 0.0000000       13 37059195 37059361 167 -      
ENSG00000102710 E057 0.1176306 0.0117932825 4.250004e-01   13 37059362 37059468 107 - 0.106 0.000 -10.148
ENSG00000102710 E058 0.2441377 0.0164400280 8.573516e-01   13 37059480 37059558 79 - 0.106 0.086 -0.339
ENSG00000102710 E059 3.9495984 0.0039507093 6.824542e-01 8.685848e-01 13 37059559 37059713 155 - 0.661 0.711 0.208

Help

Please Click HERE to learn more details about the results from DEXseq.