ENSG00000103042

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000219320 ENSG00000103042 No_inf pgKDN_inf SLC38A7 protein_coding protein_coding 11.86353 10.38464 12.61101 0.6091104 1.401326 0.2799877 3.7802747 0.5885509 5.5456644 0.5885509 0.1484214 3.2144136 0.31163333 0.057550 0.455600 0.398050 0.01420230 0.0142023 FALSE TRUE
ENST00000562149 ENSG00000103042 No_inf pgKDN_inf SLC38A7 protein_coding retained_intron 11.86353 10.38464 12.61101 0.6091104 1.401326 0.2799877 0.7690786 0.7868358 0.5880787 0.1392861 0.2232215 -0.4139472 0.06520833 0.075800 0.046750 -0.029050 0.79623467 0.0142023 FALSE TRUE
ENST00000563196 ENSG00000103042 No_inf pgKDN_inf SLC38A7 protein_coding protein_coding 11.86353 10.38464 12.61101 0.6091104 1.401326 0.2799877 0.3707269 0.0000000 1.1121807 0.0000000 1.1121807 6.8101612 0.02235833 0.000000 0.067075 0.067075 0.84449562 0.0142023 TRUE FALSE
ENST00000569209 ENSG00000103042 No_inf pgKDN_inf SLC38A7 protein_coding retained_intron 11.86353 10.38464 12.61101 0.6091104 1.401326 0.2799877 0.6185202 1.2943945 0.3909781 0.2475108 0.2260274 -1.7017850 0.05639167 0.123500 0.032800 -0.090700 0.38943455 0.0142023 TRUE TRUE
MSTRG.11274.3 ENSG00000103042 No_inf pgKDN_inf SLC38A7 protein_coding   11.86353 10.38464 12.61101 0.6091104 1.401326 0.2799877 4.1278778 4.5643396 4.1964371 0.7761502 0.5756492 -0.1209647 0.35332500 0.432975 0.340375 -0.092600 0.82818222 0.0142023 FALSE TRUE
MSTRG.11274.4 ENSG00000103042 No_inf pgKDN_inf SLC38A7 protein_coding   11.86353 10.38464 12.61101 0.6091104 1.401326 0.2799877 1.3140340 2.3215986 0.0000000 0.9419268 0.0000000 -7.8651756 0.11858333 0.231900 0.000000 -0.231900 0.03915718 0.0142023 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000103042 E001 0.1268540 0.012378960 0.455957971   16 58665109 58665111 3 - 0.000 0.103 9.733
ENSG00000103042 E002 76.1518775 0.006683528 0.442590319 0.71791806 16 58665112 58666371 1260 - 1.873 1.902 0.098
ENSG00000103042 E003 37.8386060 0.010024116 0.718179309 0.88658715 16 58666372 58667277 906 - 1.595 1.581 -0.048
ENSG00000103042 E004 7.3158442 0.002006511 0.681480402 0.86827810 16 58667278 58667361 84 - 0.936 0.900 -0.136
ENSG00000103042 E005 4.8926664 0.003019775 0.846347334 0.94545790 16 58667362 58667382 21 - 0.757 0.783 0.106
ENSG00000103042 E006 7.9352748 0.062770695 0.963754544 0.99234787 16 58667383 58667487 105 - 0.947 0.955 0.030
ENSG00000103042 E007 4.5283361 0.066286297 0.783394780 0.91662033 16 58670113 58670167 55 - 0.721 0.764 0.173
ENSG00000103042 E008 7.7077828 0.002163125 0.790116569 0.91953076 16 58671045 58671244 200 - 0.925 0.955 0.113
ENSG00000103042 E009 3.2084368 0.004828092 0.113257016 0.35394622 16 58671572 58672029 458 - 0.511 0.722 0.929
ENSG00000103042 E010 0.3731018 0.016523281 0.488174865   16 58672030 58672095 66 - 0.088 0.186 1.251
ENSG00000103042 E011 5.0231333 0.008741100 0.506735247 0.76544626 16 58672096 58672243 148 - 0.739 0.820 0.321
ENSG00000103042 E012 0.3709916 0.016929386 0.486626548   16 58675213 58675342 130 - 0.088 0.186 1.251
ENSG00000103042 E013 1.4405952 0.050775927 0.165851571 0.43574818 16 58675940 58675943 4 - 0.480 0.255 -1.334
ENSG00000103042 E014 3.6367155 0.011023683 0.324005716 0.61652736 16 58675944 58676022 79 - 0.721 0.595 -0.538
ENSG00000103042 E015 2.5587766 0.005890571 0.776531165 0.91415756 16 58676023 58676054 32 - 0.567 0.532 -0.164
ENSG00000103042 E016 1.0165569 0.011874080 0.001024140 0.01527966 16 58676055 58676121 67 - 0.000 0.496 14.513
ENSG00000103042 E017 1.5071942 0.008966743 0.007813789 0.06803824 16 58676122 58676288 167 - 0.161 0.565 2.573
ENSG00000103042 E018 2.3046576 0.005971565 0.425851269 0.70479795 16 58676289 58676346 58 - 0.567 0.458 -0.527
ENSG00000103042 E019 4.1677356 0.004093838 0.642061194 0.84818695 16 58677326 58677424 99 - 0.683 0.743 0.251
ENSG00000103042 E020 0.8702833 0.013168285 0.176588550 0.45086759 16 58677425 58677577 153 - 0.161 0.368 1.573
ENSG00000103042 E021 4.0288679 0.003563831 0.955057743 0.98905929 16 58678333 58678474 142 - 0.702 0.699 -0.012
ENSG00000103042 E022 2.5567256 0.005959894 0.778216624 0.91486644 16 58678696 58678742 47 - 0.567 0.532 -0.164
ENSG00000103042 E023 5.2251031 0.002831656 0.397943181 0.68200405 16 58678743 58678880 138 - 0.835 0.743 -0.362
ENSG00000103042 E024 2.0625901 0.007090777 0.378250642 0.66527380 16 58678881 58678894 14 - 0.540 0.415 -0.624
ENSG00000103042 E025 0.2442663 0.016155286 0.900111376   16 58679610 58679856 247 - 0.088 0.103 0.251
ENSG00000103042 E026 1.8082216 0.014824325 0.131978471 0.38545117 16 58679857 58679873 17 - 0.540 0.316 -1.209
ENSG00000103042 E027 11.1147932 0.022694087 0.029153388 0.16022163 16 58679874 58680241 368 - 1.173 0.955 -0.796
ENSG00000103042 E028 0.1265070 0.012481225 0.455811646   16 58681388 58681515 128 - 0.000 0.103 11.931
ENSG00000103042 E029 0.1170040 0.011718836 0.633459383   16 58681516 58681708 193 - 0.088 0.000 -12.298
ENSG00000103042 E030 0.1170040 0.011718836 0.633459383   16 58681709 58681871 163 - 0.088 0.000 -12.298
ENSG00000103042 E031 0.2444846 0.016143002 0.899243030   16 58683666 58683954 289 - 0.088 0.103 0.251
ENSG00000103042 E032 3.6212318 0.057446641 0.113461119 0.35437873 16 58683955 58684083 129 - 0.757 0.532 -0.972
ENSG00000103042 E033 0.7434018 0.013309871 0.310251566 0.60347331 16 58684084 58684135 52 - 0.161 0.316 1.251
ENSG00000103042 E034 1.3689207 0.009701463 0.074613455 0.27853004 16 58684136 58684178 43 - 0.224 0.496 1.666
ENSG00000103042 E035 0.7450660 0.014938597 0.312552812 0.60596079 16 58684179 58684716 538 - 0.161 0.316 1.251
ENSG00000103042 E036 0.7437487 0.013868871 0.310875650 0.60401269 16 58684717 58684770 54 - 0.161 0.316 1.251

Help

Please Click HERE to learn more details about the results from DEXseq.