ENSG00000103051

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000323786 ENSG00000103051 No_inf pgKDN_inf COG4 protein_coding protein_coding 27.50833 31.09841 24.67464 0.7148408 1.942084 -0.3336913 12.584414 13.603758 11.999813 0.9109986 1.8294367 -0.1808517 0.46528333 0.437950 0.496175 0.058225 0.8626505874 0.0001877266 FALSE  
ENST00000393612 ENSG00000103051 No_inf pgKDN_inf COG4 protein_coding protein_coding 27.50833 31.09841 24.67464 0.7148408 1.942084 -0.3336913 0.633863 0.000000 1.296702 0.0000000 0.7653155 7.0297864 0.02829167 0.000000 0.058325 0.058325 0.4452089052 0.0001877266 FALSE  
ENST00000530314 ENSG00000103051 No_inf pgKDN_inf COG4 protein_coding retained_intron 27.50833 31.09841 24.67464 0.7148408 1.942084 -0.3336913 1.844333 4.635629 0.000000 2.6938267 0.0000000 -8.8597301 0.05910833 0.149425 0.000000 -0.149425 0.5447076319 0.0001877266 FALSE  
ENST00000565715 ENSG00000103051 No_inf pgKDN_inf COG4 protein_coding protein_coding 27.50833 31.09841 24.67464 0.7148408 1.942084 -0.3336913 2.161418 0.000000 4.642174 0.0000000 2.8150749 8.8617612 0.07479167 0.000000 0.167125 0.167125 0.4094787474 0.0001877266 FALSE  
ENST00000567244 ENSG00000103051 No_inf pgKDN_inf COG4 protein_coding retained_intron 27.50833 31.09841 24.67464 0.7148408 1.942084 -0.3336913 1.333189 2.625604 0.000000 0.3819135 0.0000000 -8.0419901 0.04480000 0.084725 0.000000 -0.084725 0.0001877266 0.0001877266    
MSTRG.11451.13 ENSG00000103051 No_inf pgKDN_inf COG4 protein_coding   27.50833 31.09841 24.67464 0.7148408 1.942084 -0.3336913 4.385556 4.813791 4.228566 2.7823940 0.3593307 -0.1865911 0.16431667 0.154275 0.172475 0.018200 0.7753995728 0.0001877266 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000103051 E001 0.0000000       16 70480568 70480570 3 -      
ENSG00000103051 E002 0.0000000       16 70480571 70480571 1 -      
ENSG00000103051 E003 0.0000000       16 70480572 70480572 1 -      
ENSG00000103051 E004 0.2373413 0.0156369475 1.235758e-01   16 70480573 70480573 1 - 0.208 0.000 -13.413
ENSG00000103051 E005 0.8613496 0.0124186008 8.381174e-01 0.942004416 16 70480574 70480577 4 - 0.283 0.251 -0.232
ENSG00000103051 E006 0.8613496 0.0124186008 8.381174e-01 0.942004416 16 70480578 70480580 3 - 0.283 0.251 -0.232
ENSG00000103051 E007 0.8613496 0.0124186008 8.381174e-01 0.942004416 16 70480581 70480581 1 - 0.283 0.251 -0.232
ENSG00000103051 E008 1.3602641 0.0105208061 8.566335e-01 0.949643743 16 70480582 70480587 6 - 0.347 0.375 0.161
ENSG00000103051 E009 1.7322934 0.0079887498 8.004748e-01 0.925382785 16 70480588 70480593 6 - 0.403 0.441 0.201
ENSG00000103051 E010 2.1125698 0.0140066095 4.201961e-01 0.699622063 16 70480594 70480606 13 - 0.403 0.525 0.616
ENSG00000103051 E011 2.4936964 0.0057855043 1.898394e-01 0.468745114 16 70480607 70480614 8 - 0.403 0.595 0.938
ENSG00000103051 E012 4.3347539 0.0033101220 5.669453e-01 0.804865059 16 70480615 70480641 27 - 0.670 0.740 0.292
ENSG00000103051 E013 12.7807238 0.0010908936 1.417016e-01 0.400527291 16 70480642 70480747 106 - 1.046 1.167 0.438
ENSG00000103051 E014 6.6985393 0.0066677742 3.961353e-01 0.680931505 16 70480748 70480752 5 - 0.814 0.905 0.353
ENSG00000103051 E015 19.7908063 0.0007805980 5.733434e-01 0.808762558 16 70480753 70480844 92 - 1.280 1.317 0.129
ENSG00000103051 E016 13.9474742 0.0009985738 8.638650e-01 0.952892847 16 70480845 70480858 14 - 1.170 1.155 -0.051
ENSG00000103051 E017 13.8294701 0.0009844455 9.568246e-01 0.989750547 16 70480859 70480866 8 - 1.161 1.155 -0.019
ENSG00000103051 E018 24.7599435 0.0005470718 3.432408e-01 0.634424279 16 70480867 70480968 102 - 1.432 1.375 -0.198
ENSG00000103051 E019 11.0727208 0.0012770617 4.071112e-01 0.689637831 16 70480969 70480971 3 - 1.112 1.040 -0.260
ENSG00000103051 E020 38.7116740 0.0004212251 3.834085e-01 0.669509783 16 70480972 70481144 173 - 1.611 1.568 -0.146
ENSG00000103051 E021 31.9585707 0.0004992334 9.043246e-01 0.969234998 16 70481359 70481487 129 - 1.508 1.501 -0.025
ENSG00000103051 E022 1.0957316 0.0990402000 3.577485e-01 0.647237831 16 70481488 70481658 171 - 0.403 0.251 -0.968
ENSG00000103051 E023 1.4976573 0.0293083095 3.236189e-01 0.616333078 16 70481659 70481763 105 - 0.283 0.441 0.938
ENSG00000103051 E024 28.6278314 0.0005641475 8.444646e-01 0.944493281 16 70481764 70481865 102 - 1.465 1.453 -0.041
ENSG00000103051 E025 26.8957094 0.0073925512 8.195348e-01 0.934378817 16 70482092 70482175 84 - 1.442 1.425 -0.057
ENSG00000103051 E026 0.4992916 0.0360479807 5.846792e-01   16 70482380 70482728 349 - 0.116 0.201 0.938
ENSG00000103051 E027 26.8923825 0.0016891271 1.076071e-01 0.343942278 16 70482729 70482821 93 - 1.368 1.465 0.333
ENSG00000103051 E028 27.9628110 0.0006556190 3.213278e-01 0.614403940 16 70483853 70483969 117 - 1.412 1.468 0.193
ENSG00000103051 E029 0.0000000       16 70483970 70484065 96 -      
ENSG00000103051 E030 0.2536433 0.0159808991 4.385916e-01   16 70486702 70486827 126 - 0.000 0.143 12.020
ENSG00000103051 E031 14.3562799 0.0027569086 5.388719e-01 0.787394488 16 70490330 70490363 34 - 1.142 1.190 0.170
ENSG00000103051 E032 13.2421347 0.0048019731 4.737411e-01 0.740708906 16 70490364 70490392 29 - 1.102 1.161 0.214
ENSG00000103051 E033 25.2853136 0.0165136108 8.176393e-01 0.933615641 16 70496266 70496379 114 - 1.417 1.399 -0.061
ENSG00000103051 E034 14.9106711 0.0112238129 5.280584e-01 0.779876333 16 70496380 70496431 52 - 1.221 1.167 -0.190
ENSG00000103051 E035 26.8192053 0.0004930402 1.293881e-01 0.381624007 16 70497221 70497387 167 - 1.483 1.396 -0.301
ENSG00000103051 E036 0.1268540 0.0123756631 8.671305e-01   16 70497388 70497410 23 - 0.000 0.078 11.020
ENSG00000103051 E037 11.3402820 0.0025651596 6.618012e-01 0.858831553 16 70497937 70497972 36 - 1.102 1.063 -0.140
ENSG00000103051 E038 15.9309194 0.0009151182 9.504728e-01 0.987304074 16 70497973 70498055 83 - 1.213 1.216 0.013
ENSG00000103051 E039 24.6784596 0.0007686480 8.927537e-01 0.964422893 16 70500958 70501091 134 - 1.401 1.392 -0.032
ENSG00000103051 E040 3.0366137 0.0053797738 6.406217e-05 0.001630547 16 70501092 70501597 506 - 0.116 0.740 3.877
ENSG00000103051 E041 17.3846991 0.0015179359 7.368757e-01 0.895685997 16 70508406 70508464 59 - 1.266 1.241 -0.087
ENSG00000103051 E042 9.3647020 0.0047344122 3.492325e-03 0.038724308 16 70508465 70508665 201 - 0.793 1.092 1.124
ENSG00000103051 E043 6.4282618 0.0140945820 7.224917e-01 0.888437451 16 70508666 70508796 131 - 0.834 0.872 0.150
ENSG00000103051 E044 4.7196269 0.0032145297 1.987819e-01 0.480222163 16 70508797 70508824 28 - 0.640 0.798 0.649
ENSG00000103051 E045 22.9865749 0.0006050212 8.084714e-03 0.069577303 16 70508825 70509230 406 - 1.252 1.422 0.594
ENSG00000103051 E046 18.9595829 0.0215130717 5.219487e-01 0.775631883 16 70509231 70509299 69 - 1.320 1.265 -0.193
ENSG00000103051 E047 16.7674369 0.0012402467 7.382100e-01 0.896079777 16 70509300 70509388 89 - 1.252 1.226 -0.088
ENSG00000103051 E048 0.0000000       16 70509872 70509915 44 -      
ENSG00000103051 E049 18.2851063 0.0054729729 7.840917e-01 0.916834232 16 70509916 70510021 106 - 1.259 1.279 0.069
ENSG00000103051 E050 9.7304243 0.0015496045 4.712913e-01 0.738697806 16 70512239 70512266 28 - 1.057 0.991 -0.242
ENSG00000103051 E051 10.7199239 0.0014279174 5.093386e-01 0.767272840 16 70512267 70512318 52 - 1.091 1.033 -0.212
ENSG00000103051 E052 6.7774359 0.0020273274 6.755001e-01 0.865571290 16 70512319 70512336 18 - 0.905 0.861 -0.170
ENSG00000103051 E053 8.6162196 0.0030878540 5.235534e-01 0.776752392 16 70512337 70512373 37 - 1.008 0.946 -0.232
ENSG00000103051 E054 7.4879096 0.0279158321 3.568814e-01 0.646688604 16 70512374 70512397 24 - 0.981 0.872 -0.410
ENSG00000103051 E055 8.0314918 0.0018187394 7.294316e-01 0.892158251 16 70512398 70512432 35 - 0.922 0.955 0.126
ENSG00000103051 E056 7.9283918 0.0018442277 4.447963e-01 0.719355829 16 70514335 70514365 31 - 0.889 0.965 0.286
ENSG00000103051 E057 16.0273826 0.0008597655 5.599518e-01 0.800690438 16 70514366 70514509 144 - 1.244 1.200 -0.154
ENSG00000103051 E058 1.2520438 0.0298597425 2.104965e-01 0.494960963 16 70515868 70516040 173 - 0.208 0.409 1.353
ENSG00000103051 E059 17.9623940 0.0007730019 2.367589e-01 0.525659955 16 70517626 70517740 115 - 1.314 1.231 -0.289
ENSG00000103051 E060 11.2966978 0.0312377808 2.446414e-01 0.534988486 16 70519649 70519676 28 - 1.151 1.025 -0.458
ENSG00000103051 E061 11.0905841 0.0238193090 7.229726e-01 0.888603311 16 70519677 70519731 55 - 1.091 1.056 -0.128
ENSG00000103051 E062 0.1265070 0.0123077462 8.671742e-01   16 70523087 70523233 147 - 0.000 0.078 11.020
ENSG00000103051 E063 0.2340080 0.2383487568 1.630535e-01   16 70523234 70523372 139 - 0.207 0.000 -13.418
ENSG00000103051 E064 13.7278186 0.0009879541 3.118288e-02 0.166516604 16 70523373 70523560 188 - 1.252 1.085 -0.595

Help

Please Click HERE to learn more details about the results from DEXseq.