ENSG00000103512

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000287667 ENSG00000103512 No_inf pgKDN_inf NOMO1 protein_coding protein_coding 199.4572 148.2787 218.5132 4.813658 8.952381 0.5593774 132.68357 77.60082 157.03639 3.120534 4.303114 1.0168610 0.6513583 0.525700 0.721425 0.195725 0.003596219 0.002345414 FALSE TRUE
ENST00000565655 ENSG00000103512 No_inf pgKDN_inf NOMO1 protein_coding protein_coding 199.4572 148.2787 218.5132 4.813658 8.952381 0.5593774 64.10531 69.28592 57.65613 6.906906 9.277840 -0.2650463 0.3354750 0.464775 0.260675 -0.204100 0.011321146 0.002345414 TRUE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000103512 E001 0.0000000       16 14833721 14834016 296 +      
ENSG00000103512 E002 0.0000000       16 14838407 14838496 90 +      
ENSG00000103512 E003 0.0000000       16 14841362 14841407 46 +      
ENSG00000103512 E004 0.0000000       16 14844674 14844774 101 +      
ENSG00000103512 E005 0.0000000       16 14846577 14846683 107 +      
ENSG00000103512 E006 0.0000000       16 14848521 14848704 184 +      
ENSG00000103512 E007 0.0000000       16 14848899 14848971 73 +      
ENSG00000103512 E008 0.0000000       16 14852430 14852582 153 +      
ENSG00000103512 E009 0.0000000       16 14853054 14853080 27 +      
ENSG00000103512 E010 0.0000000       16 14853256 14853466 211 +      
ENSG00000103512 E011 0.0000000       16 14853467 14853604 138 +      
ENSG00000103512 E012 0.0000000       16 14853937 14854026 90 +      
ENSG00000103512 E013 0.0000000       16 14857217 14857322 106 +      
ENSG00000103512 E014 36.2117442 0.0056682335 0.0004703333 0.008326633 16 14857505 14857655 151 + 1.643 1.432 -0.723
ENSG00000103512 E015 29.0441375 0.0151395036 0.0011063450 0.016196962 16 14863013 14863187 175 + 1.564 1.306 -0.892
ENSG00000103512 E016 36.3942915 0.0004198872 0.1954257341 0.475807672 16 14864585 14864726 142 + 1.594 1.529 -0.222
ENSG00000103512 E017 7.6868360 0.0033577202 0.5460370853 0.791877245 16 14865024 14865155 132 + 0.908 0.968 0.224
ENSG00000103512 E018 39.3855759 0.0003458533 0.0006783258 0.011079595 16 14866555 14866691 137 + 1.664 1.498 -0.569
ENSG00000103512 E019 2.7710355 0.0805465048 0.4298803055 0.707938861 16 14868548 14868635 88 + 0.627 0.487 -0.646
ENSG00000103512 E020 0.0000000       16 14871621 14871684 64 +      
ENSG00000103512 E021 0.2346346 0.0157086597 0.4016005450   16 14872234 14872329 96 + 0.148 0.000 -11.738
ENSG00000103512 E022 46.7800116 0.0005839716 0.0620377438 0.250201426 16 14875036 14875254 219 + 1.708 1.624 -0.284
ENSG00000103512 E023 16.4314952 0.0018572120 0.9861570477 0.999194425 16 14875340 14875422 83 + 1.236 1.237 0.005
ENSG00000103512 E024 37.5785466 0.0004215149 0.7622846186 0.907258548 16 14876359 14876518 160 + 1.588 1.573 -0.051
ENSG00000103512 E025 50.3256493 0.0035521490 0.9075315460 0.970646804 16 14876664 14876790 127 + 1.708 1.702 -0.019
ENSG00000103512 E026 67.0824964 0.0002379857 0.6347336799 0.843901945 16 14878721 14878834 114 + 1.835 1.818 -0.059
ENSG00000103512 E027 12.9995787 0.0011578319 0.7706849494 0.911507725 16 14880015 14880142 128 + 1.151 1.128 -0.084
ENSG00000103512 E028 0.2536433 0.0161174744 0.1376906781   16 14881544 14881685 142 + 0.000 0.202 11.931
ENSG00000103512 E029 0.1265070 0.0123824224 0.3643554127   16 14882594 14882677 84 + 0.000 0.113 10.978
ENSG00000103512 E030 66.8210352 0.0003214283 0.8695429829 0.955134144 16 14884372 14884482 111 + 1.824 1.830 0.020
ENSG00000103512 E031 60.0425373 0.0037137447 0.7063248254 0.880766742 16 14886761 14886774 14 + 1.773 1.790 0.055
ENSG00000103512 E032 138.6178095 0.0001424692 0.1717529206 0.444393789 16 14886775 14886862 88 + 2.125 2.159 0.111
ENSG00000103512 E033 0.9965079 0.0286251135 0.0553739289 0.234459243 16 14888054 14889095 1042 + 0.148 0.443 2.131
ENSG00000103512 E034 75.2741300 0.0033419312 0.3091394050 0.602491272 16 14889096 14889215 120 + 1.859 1.901 0.142
ENSG00000103512 E035 26.3103186 0.0201078661 0.5926604632 0.820342466 16 14894998 14895090 93 + 1.452 1.402 -0.172
ENSG00000103512 E036 167.8377142 0.0003818090 0.0137153111 0.098677114 16 14895514 14895694 181 + 2.198 2.254 0.186
ENSG00000103512 E037 33.7539242 0.0004159421 0.0155192748 0.107668712 16 14895695 14895972 278 + 1.480 1.602 0.420
ENSG00000103512 E038 74.1169946 0.0062645635 0.0445858517 0.206358305 16 14895973 14896157 185 + 1.829 1.922 0.312

Help

Please Click HERE to learn more details about the results from DEXseq.