ENSG00000104320

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000265433 ENSG00000104320 No_inf pgKDN_inf NBN protein_coding protein_coding 22.59146 15.24856 26.63436 0.8679435 0.6443716 0.8042118 2.002682 1.459993 3.802720 1.459993 2.2338925 1.3750115 0.09129167 0.103200 0.142975 0.039775 8.346783e-01 5.412862e-06 FALSE TRUE
ENST00000409330 ENSG00000104320 No_inf pgKDN_inf NBN protein_coding protein_coding 22.59146 15.24856 26.63436 0.8679435 0.6443716 0.8042118 5.708109 3.103537 7.321915 1.838757 3.3294543 1.2356355 0.24887500 0.204050 0.267975 0.063925 8.423965e-01 5.412862e-06 FALSE TRUE
ENST00000523444 ENSG00000104320 No_inf pgKDN_inf NBN protein_coding protein_coding 22.59146 15.24856 26.63436 0.8679435 0.6443716 0.8042118 3.641370 4.861366 5.446268 1.788498 2.2790234 0.1635883 0.18946667 0.331150 0.210825 -0.120325 8.257336e-01 5.412862e-06 FALSE TRUE
ENST00000613033 ENSG00000104320 No_inf pgKDN_inf NBN protein_coding protein_coding 22.59146 15.24856 26.63436 0.8679435 0.6443716 0.8042118 2.979921 1.830666 1.356614 1.175260 1.3566144 -0.4296213 0.12124167 0.108575 0.049000 -0.059575 7.624298e-01 5.412862e-06 FALSE TRUE
ENST00000697292 ENSG00000104320 No_inf pgKDN_inf NBN protein_coding protein_coding 22.59146 15.24856 26.63436 0.8679435 0.6443716 0.8042118 2.598810 0.000000 4.982318 0.000000 0.9077549 8.9635659 0.10144167 0.000000 0.187900 0.187900 5.412862e-06 5.412862e-06 FALSE TRUE
ENST00000697310 ENSG00000104320 No_inf pgKDN_inf NBN protein_coding protein_coding 22.59146 15.24856 26.63436 0.8679435 0.6443716 0.8042118 2.255012 1.446647 0.000000 1.446647 0.0000000 -7.1865077 0.09197500 0.083775 0.000000 -0.083775 8.217117e-01 5.412862e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000104320 E001 0.0000000       8 89924515 89925341 827 -      
ENSG00000104320 E002 0.0000000       8 89930980 89930999 20 -      
ENSG00000104320 E003 0.8523743 0.1621935034 0.8599672502 0.95144075 8 89931000 89931987 988 - 0.253 0.281 0.202
ENSG00000104320 E004 2.5358054 0.0535532161 0.6034745380 0.82699604 8 89931988 89933330 1343 - 0.576 0.494 -0.382
ENSG00000104320 E005 0.4801918 0.0152974678 0.5616496760   8 89933331 89933335 5 - 0.202 0.115 -0.968
ENSG00000104320 E006 2.8196195 0.0052699938 0.2309334335 0.51938235 8 89933336 89933483 148 - 0.502 0.666 0.743
ENSG00000104320 E007 1.9696645 0.0589382565 0.2280089147 0.51646174 8 89933484 89933497 14 - 0.377 0.571 0.979
ENSG00000104320 E008 2.9567069 0.0054628606 0.0688064046 0.26492038 8 89933498 89933514 17 - 0.474 0.720 1.103
ENSG00000104320 E009 3.3296150 0.0074723303 0.0445695342 0.20635361 8 89933515 89933524 10 - 0.502 0.767 1.158
ENSG00000104320 E010 9.9298150 0.0539419996 0.0984107132 0.32727976 8 89933525 89933602 78 - 0.930 1.147 0.796
ENSG00000104320 E011 7.2008581 0.0214723704 0.2824394317 0.57611619 8 89933603 89933605 3 - 0.853 0.977 0.471
ENSG00000104320 E012 50.1026624 0.0026762344 0.6522131003 0.85347133 8 89933606 89934053 448 - 1.692 1.715 0.079
ENSG00000104320 E013 81.1058893 0.0002604616 0.0968828320 0.32418902 8 89934054 89935040 987 - 1.884 1.940 0.189
ENSG00000104320 E014 15.3019095 0.0058239391 0.7357919489 0.89519971 8 89935041 89935170 130 - 1.215 1.192 -0.083
ENSG00000104320 E015 32.8661149 0.0005050688 0.2864887707 0.58004712 8 89935171 89935505 335 - 1.544 1.492 -0.180
ENSG00000104320 E016 10.2710007 0.0014069828 0.1341755011 0.38929590 8 89935506 89935506 1 - 1.096 0.963 -0.486
ENSG00000104320 E017 12.9373267 0.0010715595 0.1389371029 0.39637311 8 89935507 89935543 37 - 1.183 1.065 -0.424
ENSG00000104320 E018 15.5411586 0.0008884863 0.0053169390 0.05179852 8 89935544 89935612 69 - 1.287 1.076 -0.752
ENSG00000104320 E019 0.7265656 0.0428064779 0.7554371981 0.90358940 8 89936154 89937025 872 - 0.253 0.206 -0.383
ENSG00000104320 E020 12.6768438 0.0012074151 0.0518371336 0.22599499 8 89937026 89937075 50 - 1.188 1.029 -0.573
ENSG00000104320 E021 0.7342408 0.0153127963 0.6121876133 0.83126651 8 89937076 89937684 609 - 0.202 0.281 0.617
ENSG00000104320 E022 0.7171210 0.0135395359 0.2318020225 0.52044627 8 89937685 89937793 109 - 0.298 0.115 -1.705
ENSG00000104320 E023 4.5937876 0.0256623793 0.0006645669 0.01089114 8 89937794 89940679 2886 - 0.502 0.948 1.858
ENSG00000104320 E024 0.2362687 0.0156724470 0.4234576931   8 89941677 89941731 55 - 0.145 0.000 -12.624
ENSG00000104320 E025 0.1187032 0.0118252950 0.8332422298   8 89942789 89942839 51 - 0.078 0.000 -11.702
ENSG00000104320 E026 0.7280127 0.4092381625 0.8301813981 0.93846470 8 89942840 89943252 413 - 0.253 0.206 -0.384
ENSG00000104320 E027 21.5444923 0.0008316682 0.1017907415 0.33323107 8 89943253 89943358 106 - 1.386 1.283 -0.359
ENSG00000104320 E028 9.0950744 0.0015527791 0.5191159440 0.77389572 8 89943359 89943366 8 - 1.021 0.963 -0.213
ENSG00000104320 E029 0.7270387 0.0139728582 0.7515398075 0.90214885 8 89943367 89945703 2337 - 0.253 0.206 -0.383
ENSG00000104320 E030 0.0000000       8 89945963 89946139 177 -      
ENSG00000104320 E031 29.1663760 0.0044217136 0.1412500373 0.39981234 8 89946140 89946295 156 - 1.433 1.524 0.314
ENSG00000104320 E032 2.4485044 0.0055458120 0.3540340349 0.64375684 8 89946296 89947823 1528 - 0.474 0.605 0.617
ENSG00000104320 E033 12.2250467 0.0011724728 0.1376888515 0.39499900 8 89947824 89947842 19 - 1.060 1.183 0.444
ENSG00000104320 E034 16.9755385 0.0008663936 0.1258945833 0.37623536 8 89947843 89947892 50 - 1.199 1.310 0.388
ENSG00000104320 E035 0.1268540 0.0122655024 0.3481185100   8 89947893 89947915 23 - 0.000 0.115 11.710
ENSG00000104320 E036 0.0000000       8 89953076 89953243 168 -      
ENSG00000104320 E037 62.5296232 0.0030338597 0.5430174490 0.79008021 8 89953244 89953685 442 - 1.784 1.813 0.095
ENSG00000104320 E038 7.4813894 0.0020608970 0.1443134139 0.40443750 8 89953686 89953691 6 - 0.978 0.830 -0.561
ENSG00000104320 E039 32.8921548 0.0004478154 0.5762583561 0.81048908 8 89955283 89955555 273 - 1.534 1.508 -0.089
ENSG00000104320 E040 17.0499961 0.0160457501 0.5957171508 0.82226802 8 89958725 89958854 130 - 1.231 1.276 0.160
ENSG00000104320 E041 16.5590232 0.0042974724 0.6084446036 0.82949842 8 89964410 89964507 98 - 1.220 1.262 0.146
ENSG00000104320 E042 21.8758936 0.0007739678 0.8014915240 0.92592094 8 89970364 89970518 155 - 1.345 1.364 0.065
ENSG00000104320 E043 6.8067871 0.0021196169 0.8286991006 0.93804727 8 89970519 89970519 1 - 0.876 0.902 0.096
ENSG00000104320 E044 10.0331405 0.0021250064 0.2722362717 0.56606790 8 89970520 89970557 38 - 1.074 0.977 -0.357
ENSG00000104320 E045 18.2390414 0.0008152014 0.0452978441 0.20813545 8 89971173 89971290 118 - 1.330 1.192 -0.484
ENSG00000104320 E046 14.0932681 0.0028498136 0.8561485668 0.94941025 8 89978220 89978323 104 - 1.177 1.166 -0.041
ENSG00000104320 E047 0.0000000       8 89980339 89980428 90 -      
ENSG00000104320 E048 13.4505747 0.0014503724 0.4373927162 0.71363676 8 89980734 89980852 119 - 1.177 1.118 -0.211
ENSG00000104320 E049 6.7279542 0.0799417041 0.0740866320 0.27731199 8 89980853 89980893 41 - 0.968 0.720 -0.968
ENSG00000104320 E050 1.4595804 0.0086434409 0.8876164231 0.96240074 8 89980894 89981374 481 - 0.377 0.401 0.132
ENSG00000104320 E051 13.9818115 0.0117641090 0.0244765927 0.14355378 8 89981375 89981523 149 - 1.241 1.042 -0.714
ENSG00000104320 E052 1.1975572 0.0711852576 0.2211249373 0.50818785 8 89981524 89981887 364 - 0.412 0.206 -1.383
ENSG00000104320 E053 0.6243526 0.0278277089 0.0714619029 0.27085216 8 89981888 89981952 65 - 0.078 0.345 2.617
ENSG00000104320 E054 2.2135197 0.0063638677 0.1790517101 0.45413877 8 89981953 89982002 50 - 0.412 0.605 0.939
ENSG00000104320 E055 1.8685269 0.0072650235 0.0089315647 0.07456889 8 89982003 89982721 719 - 0.253 0.637 2.077
ENSG00000104320 E056 9.3208959 0.0014884262 0.4110976919 0.69277122 8 89982722 89982855 134 - 1.037 0.963 -0.272
ENSG00000104320 E057 0.0000000       8 89983877 89984059 183 -      
ENSG00000104320 E058 0.0000000       8 89984208 89984404 197 -      
ENSG00000104320 E059 4.9603188 0.0030996655 0.4726079260 0.73985003 8 89984525 89984733 209 - 0.802 0.720 -0.330
ENSG00000104320 E060 0.0000000       8 89984917 89984973 57 -      
ENSG00000104320 E061 0.7611821 0.0212627224 0.0022089157 0.02753346 8 90003112 90003228 117 - 0.000 0.450 14.051

Help

Please Click HERE to learn more details about the results from DEXseq.