ENSG00000104783

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000600909 ENSG00000104783 No_inf pgKDN_inf KCNN4 protein_coding protein_coding 324.7018 174.1172 365.0121 2.783474 2.255887 1.067842 23.45884 24.60653 20.03300 1.178399 2.867755 -0.2965295 0.08520833 0.141500 0.054850 -0.086650 0.001150040 0.00115004 FALSE TRUE
ENST00000648053 ENSG00000104783 No_inf pgKDN_inf KCNN4 protein_coding protein_coding_CDS_not_defined 324.7018 174.1172 365.0121 2.783474 2.255887 1.067842 62.66204 44.23730 77.63401 2.476201 10.278012 0.8112853 0.20623333 0.254275 0.212525 -0.041750 0.747599410 0.00115004 FALSE TRUE
ENST00000648319 ENSG00000104783 No_inf pgKDN_inf KCNN4 protein_coding protein_coding 324.7018 174.1172 365.0121 2.783474 2.255887 1.067842 192.59593 74.71231 230.80209 6.264631 14.651152 1.6271077 0.56245833 0.428825 0.632100 0.203275 0.005496926 0.00115004 FALSE TRUE
MSTRG.15265.1 ENSG00000104783 No_inf pgKDN_inf KCNN4 protein_coding   324.7018 174.1172 365.0121 2.783474 2.255887 1.067842 17.50631 11.22408 15.30775 6.166934 9.592941 0.4473226 0.05572500 0.065525 0.042250 -0.023275 0.942897310 0.00115004 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000104783 E001 6.409518 2.207856e-03 8.643655e-01 9.530876e-01 19 43766533 43766538 6 - 0.844 0.864 0.076
ENSG00000104783 E002 24.536441 7.495060e-03 9.549977e-01 9.890593e-01 19 43766539 43766585 47 - 1.385 1.389 0.014
ENSG00000104783 E003 270.896050 9.373756e-05 1.306620e-01 3.833849e-01 19 43766586 43766821 236 - 2.402 2.432 0.099
ENSG00000104783 E004 290.838770 5.976122e-04 3.911328e-01 6.763722e-01 19 43766822 43766952 131 - 2.437 2.455 0.061
ENSG00000104783 E005 277.943972 3.766669e-04 6.924391e-01 8.741662e-01 19 43766953 43767089 137 - 2.420 2.429 0.030
ENSG00000104783 E006 55.761375 7.632612e-03 1.116687e-15 2.014295e-13 19 43767090 43767451 362 - 1.531 1.964 1.465
ENSG00000104783 E007 12.947599 1.081561e-03 5.510922e-08 3.416391e-06 19 43767452 43767539 88 - 0.922 1.357 1.563
ENSG00000104783 E008 141.033811 1.203033e-04 4.772588e-02 2.148605e-01 19 43767540 43767576 37 - 2.111 2.165 0.178
ENSG00000104783 E009 268.796959 7.713172e-05 5.725432e-01 8.084407e-01 19 43767577 43767707 131 - 2.405 2.417 0.039
ENSG00000104783 E010 187.734878 1.201280e-03 4.385838e-01 7.147178e-01 19 43768963 43769032 70 - 2.246 2.268 0.073
ENSG00000104783 E011 14.980144 1.060212e-03 4.615522e-06 1.755526e-04 19 43769033 43769332 300 - 1.031 1.376 1.225
ENSG00000104783 E012 2.981381 6.187992e-03 1.855605e-04 3.933058e-03 19 43769333 43769346 14 - 0.342 0.842 2.315
ENSG00000104783 E013 8.086639 4.201484e-03 2.424836e-03 2.943532e-02 19 43769347 43769441 95 - 0.811 1.111 1.123
ENSG00000104783 E014 180.924626 3.208344e-04 4.863310e-01 7.500238e-01 19 43769442 43769498 57 - 2.232 2.249 0.060
ENSG00000104783 E015 213.314911 2.326008e-04 8.628013e-01 9.525989e-01 19 43769499 43769560 62 - 2.310 2.307 -0.009
ENSG00000104783 E016 240.157172 1.876485e-03 2.294466e-01 5.180705e-01 19 43769719 43769829 111 - 2.371 2.340 -0.103
ENSG00000104783 E017 170.170997 1.018609e-03 6.604065e-03 6.051370e-02 19 43772000 43772103 104 - 2.235 2.161 -0.247
ENSG00000104783 E018 85.493011 1.835282e-04 3.669767e-02 1.843910e-01 19 43772104 43772135 32 - 1.939 1.866 -0.243
ENSG00000104783 E019 3.595444 2.013369e-02 7.686325e-04 1.225767e-02 19 43773786 43773900 115 - 0.433 0.884 1.961
ENSG00000104783 E020 79.991298 2.551881e-03 2.902263e-02 1.598082e-01 19 43774192 43774218 27 - 1.916 1.825 -0.305
ENSG00000104783 E021 383.131434 8.131095e-05 2.795300e-04 5.484239e-03 19 43774219 43774619 401 - 2.581 2.524 -0.190
ENSG00000104783 E022 117.064037 1.414172e-04 1.564465e-04 3.411963e-03 19 43776541 43776636 96 - 2.086 1.972 -0.380
ENSG00000104783 E023 7.178690 2.013510e-03 2.135077e-01 4.987365e-01 19 43776637 43776826 190 - 0.844 0.974 0.491
ENSG00000104783 E024 100.077693 4.709778e-03 1.972003e-02 1.257782e-01 19 43780703 43780798 96 - 2.015 1.914 -0.341
ENSG00000104783 E025 74.162906 3.360916e-04 4.095018e-01 6.917461e-01 19 43780799 43780976 178 - 1.864 1.834 -0.101
ENSG00000104783 E026 9.472782 7.985794e-03 3.269446e-01 6.193688e-01 19 43781227 43781301 75 - 0.964 1.061 0.357

Help

Please Click HERE to learn more details about the results from DEXseq.