ENSG00000104960

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000391842 ENSG00000104960 No_inf pgKDN_inf PTOV1 protein_coding protein_coding 63.47011 75.05726 51.13364 2.579337 1.978839 -0.5536289 9.420432 11.802860 7.575643 0.7600624 1.9614584 -0.6390148 0.14879167 0.158250 0.149775 -0.008475 0.914863141 0.005265112 FALSE TRUE
ENST00000595934 ENSG00000104960 No_inf pgKDN_inf PTOV1 protein_coding retained_intron 63.47011 75.05726 51.13364 2.579337 1.978839 -0.5536289 11.126915 15.520061 7.201047 0.2824328 0.4103780 -1.1067828 0.17137500 0.207150 0.140875 -0.066275 0.430956516 0.005265112 FALSE FALSE
ENST00000596424 ENSG00000104960 No_inf pgKDN_inf PTOV1 protein_coding retained_intron 63.47011 75.05726 51.13364 2.579337 1.978839 -0.5536289 15.525621 18.683424 11.957970 1.4175516 3.1546032 -0.6433524 0.24175833 0.250450 0.228475 -0.021975 0.890448126 0.005265112 FALSE TRUE
ENST00000597793 ENSG00000104960 No_inf pgKDN_inf PTOV1 protein_coding retained_intron 63.47011 75.05726 51.13364 2.579337 1.978839 -0.5536289 4.466664 6.474069 2.194430 1.0728098 0.3895385 -1.5564936 0.06785000 0.086000 0.042725 -0.043275 0.478078161 0.005265112 TRUE TRUE
ENST00000598632 ENSG00000104960 No_inf pgKDN_inf PTOV1 protein_coding retained_intron 63.47011 75.05726 51.13364 2.579337 1.978839 -0.5536289 5.317657 7.906095 2.635353 1.4432828 0.2333126 -1.5813287 0.08023333 0.104500 0.052200 -0.052300 0.425456798 0.005265112 FALSE TRUE
ENST00000599732 ENSG00000104960 No_inf pgKDN_inf PTOV1 protein_coding protein_coding 63.47011 75.05726 51.13364 2.579337 1.978839 -0.5536289 7.397424 1.180209 9.699580 1.1802089 1.4671970 3.0281941 0.12748333 0.016525 0.189000 0.172475 0.005265112 0.005265112 TRUE TRUE
ENST00000601675 ENSG00000104960 No_inf pgKDN_inf PTOV1 protein_coding protein_coding 63.47011 75.05726 51.13364 2.579337 1.978839 -0.5536289 3.558794 5.092562 3.718893 1.7409025 1.5265496 -0.4524746 0.05616667 0.066825 0.072700 0.005875 1.000000000 0.005265112 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000104960 E001 0.0000000       19 49850735 49850753 19 +      
ENSG00000104960 E002 0.0000000       19 49850754 49850827 74 +      
ENSG00000104960 E003 0.0000000       19 49850828 49850836 9 +      
ENSG00000104960 E004 0.0000000       19 49850837 49850955 119 +      
ENSG00000104960 E005 0.0000000       19 49850956 49850988 33 +      
ENSG00000104960 E006 0.0000000       19 49850989 49850998 10 +      
ENSG00000104960 E007 0.0000000       19 49850999 49851019 21 +      
ENSG00000104960 E008 0.2442663 0.0162384694 0.7064308760   19 49851020 49851096 77 + 0.118 0.076 -0.702
ENSG00000104960 E009 0.4979097 0.0151936054 0.6057654790   19 49851097 49851130 34 + 0.118 0.197 0.883
ENSG00000104960 E010 1.0886538 0.0121751441 0.0872011803 0.30601450 19 49851131 49851158 28 + 0.458 0.197 -1.702
ENSG00000104960 E011 3.5351130 0.0042111437 0.0661794042 0.25904057 19 49851159 49851190 32 + 0.778 0.543 -1.001
ENSG00000104960 E012 4.7484445 0.0030382881 0.0220991666 0.13507718 19 49851191 49851208 18 + 0.896 0.630 -1.074
ENSG00000104960 E013 4.7303823 0.0031135711 0.0034341513 0.03823648 19 49851209 49851224 16 + 0.929 0.589 -1.380
ENSG00000104960 E014 17.1940503 0.0133230404 0.0008313521 0.01299280 19 49851225 49851386 162 + 1.398 1.123 -0.968
ENSG00000104960 E015 9.5110210 0.0016038686 0.0024816932 0.02993685 19 49851387 49851402 16 + 1.159 0.887 -0.999
ENSG00000104960 E016 12.9956606 0.0011543506 0.0363424556 0.18322273 19 49851403 49851499 97 + 1.228 1.063 -0.593
ENSG00000104960 E017 0.7346867 0.0462635381 0.5674306720 0.80523699 19 49851953 49852059 107 + 0.287 0.197 -0.702
ENSG00000104960 E018 0.1272623 0.0123617438 0.9214701031   19 49852060 49852067 8 + 0.000 0.076 8.611
ENSG00000104960 E019 1.8562251 0.0084937024 0.7023964560 0.87897199 19 49852068 49852696 629 + 0.408 0.465 0.298
ENSG00000104960 E020 4.6770524 0.0082786825 0.6306638289 0.84150034 19 49854406 49854543 138 + 0.778 0.718 -0.242
ENSG00000104960 E021 15.1284655 0.0010268811 0.1883355688 0.46665551 19 49854652 49854734 83 + 1.252 1.154 -0.348
ENSG00000104960 E022 0.2447669 0.0163433500 0.7052468453   19 49854735 49854830 96 + 0.118 0.076 -0.702
ENSG00000104960 E023 21.7433182 0.0007437421 0.9915647590 1.00000000 19 49854831 49854888 58 + 1.341 1.341 0.000
ENSG00000104960 E024 0.0000000       19 49854889 49854969 81 +      
ENSG00000104960 E025 20.1698529 0.0174240940 0.7288773339 0.89191008 19 49854970 49855054 85 + 1.288 1.321 0.116
ENSG00000104960 E026 6.0625696 0.0304636747 0.9111437297 0.97178698 19 49855055 49855077 23 + 0.821 0.842 0.083
ENSG00000104960 E027 6.1142881 0.0023690508 0.0438234826 0.20444388 19 49855078 49855311 234 + 0.676 0.909 0.923
ENSG00000104960 E028 12.9975872 0.0031202830 0.0006208765 0.01029789 19 49855312 49855644 333 + 0.913 1.219 1.114
ENSG00000104960 E029 7.0048704 0.0024462092 0.0077347519 0.06756821 19 49856136 49856503 368 + 0.676 0.975 1.173
ENSG00000104960 E030 30.9563307 0.0006220432 0.0029884978 0.03444052 19 49856504 49856974 471 + 1.376 1.541 0.568
ENSG00000104960 E031 0.0000000       19 49856975 49857042 68 +      
ENSG00000104960 E032 13.7314947 0.0011048504 0.0296472574 0.16187439 19 49857043 49857130 88 + 1.252 1.084 -0.599
ENSG00000104960 E033 37.5603185 0.0004877509 0.0007715966 0.01229040 19 49857131 49857692 562 + 1.454 1.624 0.580
ENSG00000104960 E034 41.9044875 0.0004214245 0.2309615707 0.51938235 19 49857693 49857782 90 + 1.650 1.595 -0.187
ENSG00000104960 E035 11.1228687 0.0012683210 0.0006774841 0.01107255 19 49857783 49857903 121 + 0.841 1.159 1.180
ENSG00000104960 E036 25.9451725 0.0005856463 0.9959797733 1.00000000 19 49857904 49857906 3 + 1.415 1.414 -0.001
ENSG00000104960 E037 25.5741808 0.0005964884 0.9872729260 0.99963779 19 49857907 49857908 2 + 1.409 1.408 -0.006
ENSG00000104960 E038 44.8601545 0.0003070364 0.2074479538 0.49101792 19 49857909 49857977 69 + 1.680 1.624 -0.189
ENSG00000104960 E039 7.7252993 0.0073596919 0.0884617312 0.30861500 19 49857978 49858056 79 + 0.800 0.984 0.702
ENSG00000104960 E040 22.2835587 0.0010279371 0.2223415726 0.50963750 19 49858057 49858114 58 + 1.399 1.321 -0.268
ENSG00000104960 E041 1.8617279 0.0081777976 0.7037122730 0.87947718 19 49858115 49858383 269 + 0.408 0.465 0.298
ENSG00000104960 E042 0.8528202 0.0126981017 0.3144018059 0.60742753 19 49858549 49858653 105 + 0.352 0.197 -1.117
ENSG00000104960 E043 3.1298541 0.0077287422 0.0544349019 0.23233898 19 49858654 49858863 210 + 0.408 0.685 1.298
ENSG00000104960 E044 0.0000000       19 49859986 49860055 70 +      
ENSG00000104960 E045 0.0000000       19 49860056 49860093 38 +      
ENSG00000104960 E046 0.0000000       19 49860094 49860138 45 +      
ENSG00000104960 E047 0.3641302 0.1931654860 0.3761568581   19 49860139 49860183 45 + 0.211 0.076 -1.703
ENSG00000104960 E048 0.3641302 0.1931654860 0.3761568581   19 49860184 49860267 84 + 0.211 0.076 -1.703
ENSG00000104960 E049 0.0000000       19 49860268 49860336 69 +      
ENSG00000104960 E050 1.9759329 0.0102119413 0.9591306870 0.99036085 19 49860337 49860565 229 + 0.458 0.465 0.035
ENSG00000104960 E051 7.1848447 0.0520264708 0.4895071609 0.75248908 19 49860566 49860613 48 + 0.841 0.929 0.337
ENSG00000104960 E052 15.1365229 0.0027067967 0.1641906922 0.43340106 19 49860614 49861187 574 + 1.120 1.229 0.388

Help

Please Click HERE to learn more details about the results from DEXseq.