ENSG00000104972

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000324602 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding protein_coding 11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 0.8149116 0.000000 2.22565693 0.0000000 0.96941549 7.8045550 0.13023333 0.000000 0.361675 0.361675 0.02207382 0.02207382 FALSE TRUE
ENST00000396315 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding protein_coding 11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 0.4877677 0.000000 1.46330302 0.0000000 1.46330302 7.2029104 0.06146667 0.000000 0.184400 0.184400 0.75444221 0.02207382 FALSE TRUE
ENST00000396327 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding protein_coding 11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 1.0599179 1.378281 0.67772400 0.8007354 0.43672750 -1.0133981 0.11171667 0.066475 0.080825 0.014350 0.93440660 0.02207382 FALSE TRUE
ENST00000396332 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding protein_coding 11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 1.4902958 2.612591 0.00000000 1.9416172 0.00000000 -8.0348492 0.13695833 0.137825 0.000000 -0.137825 0.77089420 0.02207382 FALSE TRUE
ENST00000421584 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding nonsense_mediated_decay 11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 1.2107539 2.269516 1.36274532 1.5807825 1.09138000 -0.7316637 0.09765833 0.121450 0.171525 0.050075 0.94229965 0.02207382 TRUE TRUE
ENST00000427581 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding protein_coding 11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 0.6313386 1.616302 0.09978589 0.6494013 0.09978589 -3.8888302 0.03947500 0.075950 0.017725 -0.058225 0.61301750 0.02207382 FALSE TRUE
ENST00000462628 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding protein_coding_CDS_not_defined 11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 1.3172547 3.173005 0.12175534 0.3215236 0.04059792 -4.5944559 0.08928333 0.153700 0.018850 -0.134850 0.04460873 0.02207382 TRUE TRUE
ENST00000473412 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding protein_coding_CDS_not_defined 11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 1.1136895 3.081510 0.25955821 1.3863482 0.25955821 -3.5196430 0.05636667 0.136400 0.032700 -0.103700 0.59139797 0.02207382 FALSE FALSE
MSTRG.15646.5 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding   11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 0.5974102 1.218016 0.00000000 0.9095952 0.00000000 -6.9401860 0.04500833 0.055150 0.000000 -0.055150 0.78217682 0.02207382 TRUE TRUE
MSTRG.15646.7 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding   11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 0.8385072 1.866177 0.64934489 1.8661767 0.64934489 -1.5086905 0.06151667 0.079950 0.104600 0.024650 0.90102691 0.02207382 TRUE TRUE
MSTRG.15646.8 ENSG00000104972 No_inf pgKDN_inf LILRB1 protein_coding   11.57479 20.94838 7.098774 1.43525 0.7048209 -1.559854 0.7835733 1.767949 0.00000000 1.7679492 0.00000000 -7.4740703 0.05692500 0.075275 0.000000 -0.075275 1.00000000 0.02207382 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000104972 E001 0.1265070 0.0123146401 1.000000000   19 54617158 54617349 192 + 0.000 0.060 8.174
ENSG00000104972 E002 0.4893478 0.0513600400 0.328426851   19 54630410 54630483 74 + 0.256 0.113 -1.429
ENSG00000104972 E003 0.7349050 0.0223956416 0.233013001 0.52172547 19 54630484 54630511 28 + 0.343 0.161 -1.429
ENSG00000104972 E004 0.6176213 0.1328269579 0.554019260 0.79696143 19 54630512 54630516 5 + 0.256 0.161 -0.845
ENSG00000104972 E005 1.4711020 0.0101901441 0.090520093 0.31244326 19 54630517 54630617 101 + 0.533 0.278 -1.429
ENSG00000104972 E006 0.4901058 0.0161987665 0.323245681   19 54630618 54630632 15 + 0.256 0.113 -1.429
ENSG00000104972 E007 0.3707734 0.0166444613 0.765974253   19 54630633 54630633 1 + 0.147 0.113 -0.429
ENSG00000104972 E008 1.6391504 0.0310635870 0.093585072 0.31813931 19 54630634 54631025 392 + 0.147 0.446 2.156
ENSG00000104972 E009 2.8676880 0.2797612960 0.512922337 0.76986698 19 54631026 54631073 48 + 0.478 0.566 0.422
ENSG00000104972 E010 4.0779952 0.0540976910 0.285817105 0.57939591 19 54631074 54631107 34 + 0.765 0.616 -0.622
ENSG00000104972 E011 0.1271363 0.0125455953 1.000000000   19 54631262 54631270 9 + 0.000 0.060 10.243
ENSG00000104972 E012 4.6894420 0.0031267340 0.089102741 0.30978323 19 54631271 54631306 36 + 0.847 0.647 -0.812
ENSG00000104972 E013 14.0305001 0.0012377679 0.309143462 0.60249127 19 54631500 54631787 288 + 1.178 1.102 -0.273
ENSG00000104972 E014 5.0680866 0.0222096906 0.203152270 0.48570855 19 54631935 54632060 126 + 0.847 0.688 -0.635
ENSG00000104972 E015 8.5379198 0.0017696703 0.082670386 0.29622273 19 54632061 54632237 177 + 1.043 0.879 -0.613
ENSG00000104972 E016 14.4303256 0.0009895274 0.676250525 0.86583911 19 54632464 54632760 297 + 1.154 1.127 -0.098
ENSG00000104972 E017 3.3661232 0.0045170313 0.920855216 0.97524654 19 54633016 54633050 35 + 0.581 0.600 0.086
ENSG00000104972 E018 3.6035258 0.0044991537 0.611974311 0.83117419 19 54633051 54633098 48 + 0.664 0.600 -0.277
ENSG00000104972 E019 3.2549118 0.0042353877 0.371260223 0.65930807 19 54633099 54633125 27 + 0.478 0.616 0.642
ENSG00000104972 E020 4.2705874 0.0034356138 0.091842259 0.31474269 19 54633126 54633142 17 + 0.478 0.726 1.107
ENSG00000104972 E021 8.7434921 0.0067180215 0.463626516 0.73348486 19 54633143 54633244 102 + 0.871 0.957 0.326
ENSG00000104972 E022 5.2495391 0.0036154597 0.428264171 0.70683640 19 54633245 54633318 74 + 0.664 0.773 0.446
ENSG00000104972 E023 2.2650138 0.0065175683 0.104147760 0.33722191 19 54633638 54633688 51 + 0.256 0.530 1.571
ENSG00000104972 E024 0.4992614 0.0153059071 1.000000000   19 54633971 54633973 3 + 0.147 0.161 0.156
ENSG00000104972 E025 2.9946914 0.0560012684 0.870994483 0.95561692 19 54633974 54634021 48 + 0.533 0.566 0.155
ENSG00000104972 E026 1.2612322 0.1192338990 0.248577160 0.53939086 19 54634022 54634183 162 + 0.147 0.370 1.742
ENSG00000104972 E027 0.5076982 0.1680674295 0.371295021 0.65930807 19 54634364 54634370 7 + 0.000 0.203 11.869
ENSG00000104972 E028 0.5076982 0.1680674295 0.371295021 0.65930807 19 54634371 54634402 32 + 0.000 0.203 11.869
ENSG00000104972 E029 0.8805177 0.0158801749 0.446552907 0.72095984 19 54634403 54634587 185 + 0.147 0.278 1.156
ENSG00000104972 E030 0.6258335 0.0147227411 0.771590094 0.91200833 19 54634588 54634640 53 + 0.147 0.203 0.571
ENSG00000104972 E031 6.5962041 0.0027642344 0.801284022 0.92588719 19 54634641 54634763 123 + 0.847 0.824 -0.088
ENSG00000104972 E032 1.8781298 0.0338355843 0.555266887 0.79784112 19 54634893 54635103 211 + 0.343 0.446 0.571
ENSG00000104972 E033 2.1495506 0.0068080041 0.026799943 0.15192644 19 54635104 54635179 76 + 0.147 0.530 2.571
ENSG00000104972 E034 5.0222981 0.0029108464 0.075019054 0.27952177 19 54635259 54635296 38 + 0.533 0.783 1.074
ENSG00000104972 E035 6.9523214 0.0021413926 0.545261069 0.79129185 19 54635557 54635609 53 + 0.894 0.834 -0.231
ENSG00000104972 E036 2.0211562 0.0142177383 0.037464479 0.18654073 19 54635610 54636272 663 + 0.147 0.510 2.478
ENSG00000104972 E037 2.0311032 0.0071203918 0.003738672 0.04050654 19 54636273 54636493 221 + 0.000 0.530 13.619
ENSG00000104972 E038 1.9467911 0.0979546360 0.035183709 0.17954378 19 54636494 54636496 3 + 0.664 0.311 -1.790
ENSG00000104972 E039 12.7277614 0.0011093297 0.012338848 0.09201928 19 54636497 54636652 156 + 1.222 1.023 -0.714
ENSG00000104972 E040 95.0129280 0.0001916482 0.209822766 0.49423868 19 54636732 54638028 1297 + 1.893 1.935 0.141

Help

Please Click HERE to learn more details about the results from DEXseq.