ENSG00000106636

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000223369 ENSG00000106636 No_inf pgKDN_inf YKT6 protein_coding protein_coding 40.62248 29.51824 47.95123 1.216239 0.7730846 0.699773 34.11352 22.61919 42.70583 1.364536 0.9842906 0.9165861 0.8297167 0.7648 0.890475 0.125675 0.0132315 0.0132315 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000106636 E001 0.1272623 0.0123669878 0.3885709589   7 44200959 44200965 7 + 0.000 0.110 9.690
ENSG00000106636 E002 0.1272623 0.0123669878 0.3885709589   7 44200966 44200967 2 + 0.000 0.110 11.683
ENSG00000106636 E003 0.2459004 0.0164856380 0.8051846775   7 44200968 44200971 4 + 0.082 0.110 0.475
ENSG00000106636 E004 0.2459004 0.0164856380 0.8051846775   7 44200972 44200977 6 + 0.082 0.110 0.475
ENSG00000106636 E005 0.3645386 0.2570374768 0.8462711746   7 44200978 44200982 5 + 0.151 0.110 -0.526
ENSG00000106636 E006 1.3357800 0.0094937795 0.7005196891 0.877973390 7 44200983 44201011 29 + 0.390 0.333 -0.332
ENSG00000106636 E007 29.2737508 0.0005037737 0.2077746184 0.491470513 7 44201012 44201239 228 + 1.504 1.440 -0.220
ENSG00000106636 E008 14.2306740 0.0033398305 0.5497069558 0.794412612 7 44204568 44204574 7 + 1.197 1.155 -0.151
ENSG00000106636 E009 27.1902104 0.0009152541 0.1222181547 0.369760137 7 44204575 44204650 76 + 1.481 1.397 -0.289
ENSG00000106636 E010 0.0000000       7 44205583 44205631 49 +      
ENSG00000106636 E011 17.5748830 0.0008528656 0.0871254081 0.305945814 7 44206385 44206406 22 + 1.312 1.196 -0.407
ENSG00000106636 E012 31.4737667 0.0004358767 0.3644224451 0.653155661 7 44206407 44206485 79 + 1.526 1.483 -0.147
ENSG00000106636 E013 3.9785208 0.0108024643 0.0010233880 0.015272665 7 44206486 44207332 847 + 0.458 0.883 1.829
ENSG00000106636 E014 0.3527111 0.0279035623 0.1830240733   7 44207333 44207387 55 + 0.210 0.000 -13.245
ENSG00000106636 E015 35.8572131 0.0040874102 0.6581308167 0.857070141 7 44207388 44207492 105 + 1.572 1.552 -0.069
ENSG00000106636 E016 14.9150700 0.0069443393 0.3227962565 0.615683888 7 44208133 44208135 3 + 1.230 1.155 -0.268
ENSG00000106636 E017 15.5312396 0.0133891436 0.4443633012 0.718974329 7 44208136 44208198 63 + 1.240 1.180 -0.213
ENSG00000106636 E018 3.8644132 0.0652910864 0.0039579717 0.042127249 7 44208199 44208406 208 + 0.425 0.883 1.999
ENSG00000106636 E019 7.3542102 0.0153799513 0.1743838383 0.448080893 7 44208407 44208794 388 + 0.846 0.998 0.572
ENSG00000106636 E020 22.4166184 0.0104515328 0.0001222778 0.002800396 7 44208795 44210841 2047 + 1.219 1.503 0.988
ENSG00000106636 E021 0.0000000       7 44210842 44210931 90 +      
ENSG00000106636 E022 0.0000000       7 44210932 44211022 91 +      
ENSG00000106636 E023 0.0000000       7 44211023 44211124 102 +      
ENSG00000106636 E024 0.0000000       7 44211125 44211553 429 +      
ENSG00000106636 E025 0.0000000       7 44211554 44211604 51 +      
ENSG00000106636 E026 0.0000000       7 44211605 44212246 642 +      
ENSG00000106636 E027 0.0000000       7 44212247 44212287 41 +      
ENSG00000106636 E028 117.9857787 0.0035955581 0.7520083307 0.902389919 7 44212288 44213174 887 + 2.074 2.069 -0.015
ENSG00000106636 E029 31.2411639 0.0005115691 0.5037048647 0.763177183 7 44213175 44213254 80 + 1.518 1.487 -0.105
ENSG00000106636 E030 219.5945342 0.0031602632 0.5952622311 0.822063634 7 44213255 44214294 1040 + 2.333 2.349 0.055

Help

Please Click HERE to learn more details about the results from DEXseq.