ENSG00000107164

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000319725 ENSG00000107164 No_inf pgKDN_inf FUBP3 protein_coding protein_coding 39.29303 38.30383 40.89431 0.3375706 1.453119 0.09438762 22.148180 16.199853 26.653238 0.6104714 1.676955 0.7179810 0.56371667 0.422675 0.656050 0.233375 0.04289339 0.04289339 FALSE TRUE
ENST00000472006 ENSG00000107164 No_inf pgKDN_inf FUBP3 protein_coding protein_coding_CDS_not_defined 39.29303 38.30383 40.89431 0.3375706 1.453119 0.09438762 3.312554 4.557909 1.059448 2.7861418 1.059448 -2.0946679 0.08502500 0.120750 0.024800 -0.095950 0.80121013 0.04289339   FALSE
ENST00000492199 ENSG00000107164 No_inf pgKDN_inf FUBP3 protein_coding protein_coding_CDS_not_defined 39.29303 38.30383 40.89431 0.3375706 1.453119 0.09438762 3.966765 7.228909 4.109132 2.2630964 2.535271 -0.8134321 0.09982500 0.187325 0.098200 -0.089125 0.59450876 0.04289339   FALSE
MSTRG.29426.11 ENSG00000107164 No_inf pgKDN_inf FUBP3 protein_coding   39.29303 38.30383 40.89431 0.3375706 1.453119 0.09438762 1.103991 0.000000 3.311974 0.0000000 3.311974 8.3758968 0.02584167 0.000000 0.077525 0.077525 0.84698641 0.04289339 FALSE TRUE
MSTRG.29426.12 ENSG00000107164 No_inf pgKDN_inf FUBP3 protein_coding   39.29303 38.30383 40.89431 0.3375706 1.453119 0.09438762 5.641502 7.031650 4.143325 1.0301847 2.423216 -0.7616468 0.14543333 0.183575 0.103800 -0.079775 0.56636366 0.04289339 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000107164 E001 0.3723461 0.1963785927 0.563852167   9 130578965 130579066 102 + 0.090 0.182 1.170
ENSG00000107164 E002 0.6267447 0.0148888148 0.137056336 0.394100430 9 130579067 130579211 145 + 0.090 0.309 2.170
ENSG00000107164 E003 1.8427222 0.0116232142 0.637263842 0.845161165 9 130579212 130579576 365 + 0.417 0.488 0.363
ENSG00000107164 E004 0.2357071 0.0156493575 0.284411359   9 130579577 130579580 4 + 0.165 0.000 -12.354
ENSG00000107164 E005 2.2028899 0.0133719294 0.808846730 0.929422861 9 130579581 130579602 22 + 0.488 0.523 0.170
ENSG00000107164 E006 4.5190671 0.0230622928 0.848238397 0.946285748 9 130579603 130579619 17 + 0.731 0.754 0.093
ENSG00000107164 E007 17.3067227 0.0055895790 0.551503533 0.795386402 9 130579620 130579764 145 + 1.284 1.239 -0.156
ENSG00000107164 E008 0.3802150 0.0272064244 0.084234616   9 130580659 130581094 436 + 0.000 0.250 12.238
ENSG00000107164 E009 1.1138318 0.0109006739 0.242301993 0.532088790 9 130581095 130581513 419 + 0.228 0.408 1.170
ENSG00000107164 E010 2.3564012 0.0715405930 0.113820892 0.355234998 9 130581514 130582086 573 + 0.377 0.641 1.285
ENSG00000107164 E011 0.1170040 0.0116737076 0.603043325   9 130593841 130593887 47 + 0.090 0.000 -11.418
ENSG00000107164 E012 17.5998513 0.0007970953 0.979224763 0.997441092 9 130595483 130595588 106 + 1.268 1.271 0.010
ENSG00000107164 E013 0.0000000       9 130596537 130596661 125 +      
ENSG00000107164 E014 1.6229760 0.0085315176 0.029867387 0.162583025 9 130607298 130608393 1096 + 0.228 0.556 1.907
ENSG00000107164 E015 6.6585092 0.0022104681 0.061710192 0.249627053 9 130609954 130609956 3 + 0.969 0.773 -0.752
ENSG00000107164 E016 12.7569616 0.0012090150 0.097933786 0.326349139 9 130609957 130609987 31 + 1.198 1.066 -0.472
ENSG00000107164 E017 0.8706916 0.0962258110 0.229309682 0.517995644 9 130610559 130610603 45 + 0.165 0.361 1.493
ENSG00000107164 E018 17.6358399 0.0008234730 0.166066897 0.436165182 9 130612456 130612505 50 + 1.314 1.220 -0.332
ENSG00000107164 E019 23.1483938 0.0006050268 0.272355912 0.566067902 9 130612956 130613027 72 + 1.414 1.348 -0.227
ENSG00000107164 E020 17.0744612 0.0012235642 0.403504238 0.686471535 9 130614288 130614345 58 + 1.284 1.226 -0.203
ENSG00000107164 E021 31.6699092 0.0007982801 0.906699719 0.970269272 9 130616355 130616517 163 + 1.510 1.518 0.025
ENSG00000107164 E022 26.5710522 0.0082604224 0.385412232 0.671452397 9 130617797 130617895 99 + 1.468 1.409 -0.202
ENSG00000107164 E023 18.9355887 0.0008035731 0.029834537 0.162502112 9 130620354 130620413 60 + 1.365 1.220 -0.508
ENSG00000107164 E024 21.4064020 0.0006251415 0.097331796 0.325005763 9 130620414 130620458 45 + 1.398 1.294 -0.360
ENSG00000107164 E025 34.3023218 0.0004972885 0.596134965 0.822489170 9 130622708 130622810 103 + 1.560 1.534 -0.087
ENSG00000107164 E026 34.0668563 0.0004143311 0.675004170 0.865318381 9 130623611 130623711 101 + 1.554 1.534 -0.068
ENSG00000107164 E027 30.7505951 0.0004383166 0.546963929 0.792562063 9 130626364 130626505 142 + 1.516 1.486 -0.105
ENSG00000107164 E028 35.0962957 0.0009784706 0.257361997 0.549565386 9 130630628 130630788 161 + 1.584 1.528 -0.192
ENSG00000107164 E029 0.6342667 0.0142702465 0.014623452 0.103246662 9 130631161 130631293 133 + 0.000 0.361 13.012
ENSG00000107164 E030 22.9168909 0.0005875887 0.413415308 0.694181425 9 130631557 130631630 74 + 1.402 1.353 -0.169
ENSG00000107164 E031 21.1210548 0.0131351908 0.730379581 0.892722937 9 130631942 130632022 81 + 1.356 1.333 -0.081
ENSG00000107164 E032 17.4869544 0.0008451425 0.917790009 0.974114604 9 130632202 130632278 77 + 1.263 1.271 0.029
ENSG00000107164 E033 3.6907331 0.0039373535 0.300559769 0.593417674 9 130633619 130633860 242 + 0.602 0.734 0.557
ENSG00000107164 E034 0.4999558 0.0152928670 0.266908182 0.560198696 9 130634621 130634666 46 + 0.090 0.250 1.755
ENSG00000107164 E035 12.4701362 0.0030452785 0.987861472 0.999865247 9 130634667 130634738 72 + 1.129 1.129 0.000
ENSG00000107164 E036 1.2413088 0.0100250880 0.148000091 0.409618563 9 130635864 130635998 135 + 0.228 0.450 1.393
ENSG00000107164 E037 30.1223065 0.0009594957 0.304057098 0.597542515 9 130635999 130636126 128 + 1.465 1.521 0.194
ENSG00000107164 E038 259.1726853 0.0001779289 0.000346017 0.006532055 9 130637014 130638352 1339 + 2.386 2.443 0.189

Help

Please Click HERE to learn more details about the results from DEXseq.