ENSG00000107551

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000340258 ENSG00000107551 No_inf pgKDN_inf RASSF4 protein_coding protein_coding 12.18888 23.48236 5.288178 2.934429 0.1901021 -2.148623 3.2647042 5.425587 3.2696141 0.8295504 0.2486753 -0.728909748 0.33680833 0.247175 0.619200 0.372025 0.03684040 0.0368404 FALSE TRUE
ENST00000472561 ENSG00000107551 No_inf pgKDN_inf RASSF4 protein_coding protein_coding_CDS_not_defined 12.18888 23.48236 5.288178 2.934429 0.1901021 -2.148623 0.4677251 0.000000 0.0000000 0.0000000 0.0000000 0.000000000 0.06198333 0.000000 0.000000 0.000000   0.0368404 FALSE TRUE
ENST00000489171 ENSG00000107551 No_inf pgKDN_inf RASSF4 protein_coding retained_intron 12.18888 23.48236 5.288178 2.934429 0.1901021 -2.148623 0.8169496 0.804666 0.8032597 0.3555609 0.2769529 -0.002492638 0.10569167 0.038775 0.155725 0.116950 0.54881922 0.0368404 FALSE TRUE
MSTRG.3361.16 ENSG00000107551 No_inf pgKDN_inf RASSF4 protein_coding   12.18888 23.48236 5.288178 2.934429 0.1901021 -2.148623 2.7353139 6.348375 0.6398352 1.6362675 0.2183270 -3.290512232 0.17851667 0.260400 0.117325 -0.143075 0.54185321 0.0368404   FALSE
MSTRG.3361.2 ENSG00000107551 No_inf pgKDN_inf RASSF4 protein_coding   12.18888 23.48236 5.288178 2.934429 0.1901021 -2.148623 1.3346516 2.672351 0.0000000 1.6306414 0.0000000 -8.067353998 0.08368333 0.101300 0.000000 -0.101300 0.78192941 0.0368404 FALSE TRUE
MSTRG.3361.4 ENSG00000107551 No_inf pgKDN_inf RASSF4 protein_coding   12.18888 23.48236 5.288178 2.934429 0.1901021 -2.148623 1.9247973 4.884723 0.2158343 0.2428118 0.1328902 -4.437890647 0.11245000 0.215800 0.039000 -0.176800 0.06914678 0.0368404 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000107551 E001 0.4781456 0.0317508160 0.027829039   10 44959407 44959779 373 + 0.373 0.054 -3.359
ENSG00000107551 E002 1.3582169 0.0245613624 0.306989362 0.60021295 10 44959780 44959801 22 + 0.449 0.285 -0.967
ENSG00000107551 E003 1.4853532 0.0622970024 0.417493467 0.69722282 10 44959802 44959808 7 + 0.449 0.314 -0.774
ENSG00000107551 E004 2.6125881 0.0060573771 0.511326468 0.76854259 10 44959809 44959830 22 + 0.570 0.475 -0.453
ENSG00000107551 E005 2.9934938 0.0064152683 0.763367738 0.90775568 10 44959831 44959838 8 + 0.570 0.529 -0.190
ENSG00000107551 E006 4.1102156 0.0036318823 0.511814930 0.76898422 10 44959839 44959866 28 + 0.705 0.621 -0.360
ENSG00000107551 E007 3.4952718 0.0041362348 0.744611561 0.89879857 10 44970165 44970168 4 + 0.620 0.577 -0.190
ENSG00000107551 E008 5.2362238 0.0028352951 0.562713321 0.80244785 10 44970169 44970223 55 + 0.777 0.708 -0.280
ENSG00000107551 E009 3.7362341 0.0103265723 0.592643471 0.82034247 10 44970224 44970264 41 + 0.665 0.592 -0.315
ENSG00000107551 E010 14.3528256 0.0107057524 0.003905879 0.04173958 10 44970265 44970870 606 + 0.838 1.157 1.183
ENSG00000107551 E011 1.5981009 0.0171413102 0.064792925 0.25657427 10 44970871 44971399 529 + 0.570 0.285 -1.552
ENSG00000107551 E012 2.9040989 0.0093603901 0.086049881 0.30385061 10 44971400 44971772 373 + 0.280 0.577 1.618
ENSG00000107551 E013 5.1343024 0.0027259234 0.653771006 0.85465461 10 44971773 44971793 21 + 0.665 0.730 0.270
ENSG00000107551 E014 5.2401282 0.0028278660 0.827527928 0.93757764 10 44971794 44971848 55 + 0.743 0.719 -0.097
ENSG00000107551 E015 0.0000000       10 44980892 44980927 36 +      
ENSG00000107551 E016 2.6167128 0.0256557441 0.886609048 0.96210157 10 44981039 44982520 1482 + 0.514 0.494 -0.096
ENSG00000107551 E017 2.4927213 0.0057461246 0.784001676 0.91683423 10 44982521 44982524 4 + 0.514 0.475 -0.190
ENSG00000107551 E018 8.3497729 0.0020003728 0.563031865 0.80260501 10 44982525 44982663 139 + 0.939 0.882 -0.218
ENSG00000107551 E019 0.7614676 0.0136732943 0.213248564 0.49845888 10 44982910 44983027 118 + 0.000 0.254 11.530
ENSG00000107551 E020 2.2568928 0.0175398231 0.553080465 0.79632604 10 44983028 44983869 842 + 0.373 0.475 0.547
ENSG00000107551 E021 0.8705042 0.0202407229 0.705584701 0.88042096 10 44983870 44983940 71 + 0.280 0.221 -0.453
ENSG00000107551 E022 1.8762053 0.0446702871 0.833423123 0.93999964 10 44983941 44984021 81 + 0.373 0.413 0.225
ENSG00000107551 E023 7.3089921 0.0023106113 0.043036617 0.20234826 10 44984022 44984113 92 + 1.002 0.790 -0.811
ENSG00000107551 E024 0.7622843 0.0138323014 0.213094956 0.49835883 10 44984114 44984812 699 + 0.000 0.254 11.530
ENSG00000107551 E025 7.1283240 0.0021043405 0.806237715 0.92832401 10 44984813 44984875 63 + 0.808 0.842 0.132
ENSG00000107551 E026 9.2762035 0.0026232047 0.304097939 0.59754934 10 44984876 44984970 95 + 0.838 0.958 0.456
ENSG00000107551 E027 7.3133026 0.0019902364 0.016184637 0.11052714 10 44989274 44989332 59 + 0.570 0.897 1.341
ENSG00000107551 E028 4.9366413 0.0032214912 0.002784510 0.03262649 10 44989333 44989374 42 + 0.280 0.771 2.435
ENSG00000107551 E029 2.7746638 0.0058699956 0.101150464 0.33216324 10 44989375 44989375 1 + 0.280 0.562 1.547
ENSG00000107551 E030 0.0000000       10 44989617 44989669 53 +      
ENSG00000107551 E031 6.5109983 0.0047314135 0.585201981 0.81575356 10 44989670 44989721 52 + 0.743 0.817 0.296
ENSG00000107551 E032 0.4977836 0.0313644764 0.908148368   10 44990061 44990085 25 + 0.162 0.145 -0.190
ENSG00000107551 E033 0.3817870 0.5246295394 1.000000000   10 44990538 44990828 291 + 0.000 0.145 10.263
ENSG00000107551 E034 11.3492904 0.0022797659 0.509310313 0.76727284 10 44990948 44991069 122 + 1.057 1.000 -0.211
ENSG00000107551 E035 0.1271363 0.0124254286 1.000000000   10 44991070 44991343 274 + 0.000 0.054 9.196
ENSG00000107551 E036 11.6313504 0.0013836767 0.835985414 0.94114226 10 44991905 44992002 98 + 1.002 1.028 0.093
ENSG00000107551 E037 3.9077201 0.0039606461 0.063484435 0.25353347 10 44992003 44992284 282 + 0.373 0.673 1.448
ENSG00000107551 E038 115.5254589 0.0001751648 0.031204465 0.16661535 10 44993269 44995891 2623 + 2.018 1.970 -0.161
ENSG00000107551 E039 0.0000000       10 45000271 45000311 41 +      

Help

Please Click HERE to learn more details about the results from DEXseq.